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Robin Buell
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Research Profile (preview)
Genes & Molecular Sequences
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20
Ouyang, Shu
13
Jiang, Jiming
8
Zhu, Wei
7
Cheng, Zhukuan
6
Rensink, Willem Albert
6
Yuan, Qiaoping
4
Wing, Rod
4
Sultana, Razvan
4
Quackenbush, John
4
Childs, Kevin
4
Hamilton, John
4
Hsiao, Joseph
4
Lin, Haining
4
Liu, Jia
4
Nagaki, Kiyotaka
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All Publications
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2009: Buell C Robin
Poaceae genomes: going from unattainable to becoming a model clade for comparative plant genomics.
Plant physiology 2009;149(1):111-6.
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2009: Ouyang Shu; Thibaud-Nissen Françoise; Childs Kevin L; Zhu Wei; Buell C Robin
Plant genome annotation methods.
Methods in molecular biology (Clifton, N.J.) 2009;513():263-82.
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2008: Iovene Marina; Wielgus Susan M; Simon Philipp W; Buell C Robin; Jiang Jiming
Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato.
Genetics 2008;180(3):1307-17.
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2008: Jung Ki-Hong; Dardick Christopher; Bartley Laura E; Cao Peijian; Phetsom Jirapa; Canlas Patrick; Seo Young-Su; Shultz Michael; Ouyang Shu; Yuan Qiaoping; Frank Bryan C; Ly Eugene; Zheng Li; Jia Yi; Hsia An-Ping; An Kyungsook; Chou Hui-Hsien; Rocke David; Lee Geun Cheol; Schnable Patrick S; An Gynheung; Buell C Robin; Ronald Pamela C
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.
PloS one 2008;3(10):e3337.
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2008: Zhu Wei; Ouyang Shu; Iovene Marina; O'Brien Kimberly; Vuong Hue; Jiang Jiming; Buell C Robin
Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition.
BMC genomics 2008;9():286.
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2008: Lin Haining; Ouyang Shu; Egan Amy; Nobuta Kan; Haas Brian J; Zhu Wei; Gu Xun; Silva Joana C; Meyers Blake C; Buell C Robin
Characterization of paralogous protein families in rice.
BMC plant biology 2008;8():18.
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2007: Campbell Matthew A; Zhu Wei; Jiang Ning; Lin Haining; Ouyang Shu; Childs Kevin L; Haas Brian J; Hamilton John P; Buell C Robin
Identification and characterization of lineage-specific genes within the Poaceae.
Plant physiology 2007;145(4):1311-22.
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2007: Stupar Robert M; Bhaskar Pudota B; Yandell Brian S; Rensink Willem A; Hart Amy L; Ouyang Shu; Veilleux Richard E; Busse James S; Erhardt Robert J; Buell C Robin; Jiang Jiming
Phenotypic and transcriptomic changes associated with potato autopolyploidization.
Genetics 2007;176(4):2055-67.
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2007: Zhu Wei; Buell C Robin
Improvement of whole-genome annotation of cereals through comparative analyses.
Genome research 2007;17(3):299-310.
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2007: Ouyang Shu; Zhu Wei; Hamilton John; Lin Haining; Campbell Matthew; Childs Kevin; Thibaud-Nissen Françoise; Malek Renae L; Lee Yuandan; Zheng Li; Orvis Joshua; Haas Brian; Wortman Jennifer; Buell C Robin
The TIGR Rice Genome Annotation Resource: improvements and new features.
Nucleic acids research 2007;35(Database issue):D883-7.
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2007: Childs Kevin L; Hamilton John P; Zhu Wei; Ly Eugene; Cheung Foo; Wu Hank; Rabinowicz Pablo D; Town Chris D; Buell C Robin; Chan Agnes P
The TIGR Plant Transcript Assemblies database.
Nucleic acids research 2007;35(Database issue):D846-51.
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2007: Chan Agnes P; Rabinowicz Pablo D; Quackenbush John; Buell C Robin; Town Chris D
Plant database resources at The Institute for Genomic Research.
Methods in molecular biology (Clifton, N.J.) 2007;406():113-36.
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2007: Van Deynze Allen; Stoffel Kevin; Buell C Robin; Kozik Alexander; Liu Jia; van der Knaap Esther; Francis David
Diversity in conserved genes in tomato.
BMC genomics 2007;8():465.
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2007: Thibaud-Nissen Françoise; Campbell Matthew; Hamilton John P; Zhu Wei; Buell C Robin
EuCAP, a Eukaryotic Community Annotation Package, and its application to the rice genome.
BMC genomics 2007;8():388.
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2006: Vencato Monica; Tian Fang; Alfano James R; Buell C Robin; Cartinhour Samuel; DeClerck Genevieve A; Guttman David S; Stavrinides John; Joardar Vinita; Lindeberg Magdalen; Bronstein Philip A; Mansfield John W; Myers Christopher R; Collmer Alan; Schneider David J
Bioinformatics-enabled identification of the HrpL regulon and type III secretion system effector proteins of Pseudomonas syringae pv. phaseolicola 1448A.
Molecular plant-microbe interactions : MPMI 2006;19(11):1193-206.
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2006: Cairney John; Zheng Li; Cowels Allison; Hsiao Joseph; Zismann Victoria; Liu Jia; Ouyang Shu; Thibaud-Nissen Francoise; Hamilton John; Childs Kevin; Pullman Gerald S; Zhang Yiting; Oh Thomas; Buell C Robin
Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis.
Plant molecular biology 2006;62(4-5):485-501.
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2006: Yan Huihuang; Ito Hidetaka; Nobuta Kan; Ouyang Shu; Jin Weiwei; Tian Shulan; Lu Cheng; Venu R C; Wang Guo-Liang; Green Pamela J; Wing Rod A; Buell C Robin; Meyers Blake C; Jiang Jiming
Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere.
The Plant cell 2006;18(9):2123-33.
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2006: McNally Kenneth L; Bruskiewich Richard; Mackill David; Buell C Robin; Leach Jan E; Leung Hei
Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes.
Plant physiology 2006;141(1):26-31.
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2006: Avila-Adame Cruz; Gómez-Alpizar Luis; Zismann Victoria; Jones Kristine M; Buell C Robin; Ristaino Jean Beagle
Mitochondrial genome sequences and molecular evolution of the Irish potato famine pathogen, Phytophthora infestans.
Current genetics 2006;49(1):39-46.
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2006: Campbell Matthew A; Haas Brian J; Hamilton John P; Mount Stephen M; Buell C Robin
Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis.
BMC genomics 2006;7():327.
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2006: Lin Haining; Zhu Wei; Silva Joana C; Gu Xun; Buell C Robin
Intron gain and loss in segmentally duplicated genes in rice.
Genome biology 2006;7(5):R41.
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2005: Rensink Willem Albert; Buell C Robin
Microarray expression profiling resources for plant genomics.
Trends in plant science 2005;10(12):603-9.
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2005: Yan Huihuang; Jin Weiwei; Nagaki Kiyotaka; Tian Shulan; Ouyang Shu; Buell C Robin; Talbert Paul B; Henikoff Steven; Jiang Jiming
Transcription and histone modifications in the recombination-free region spanning a rice centromere.
The Plant cell 2005;17(12):3227-38.
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2005: Rensink Willem Albert; Iobst Stacey; Hart Amy; Stegalkina Svetlana; Liu Jia; Buell C Robin
Gene expression profiling of potato responses to cold, heat, and salt stress.
Functional & integrative genomics 2005;5(4):201-7.
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2005: Restrepo S; Myers K L; del Pozo O; Martin G B; Hart A L; Buell C R; Fry W E; Smart C D
Gene profiling of a compatible interaction between Phytophthora infestans and Solanum tuberosum suggests a role for carbonic anhydrase.
Molecular plant-microbe interactions : MPMI 2005;18(9):913-22.
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2005: Rensink Willem; Hart Amy; Liu Jia; Ouyang Shu; Zismann Victoria; Buell C Robin
Analyzing the potato abiotic stress transcriptome using expressed sequence tags.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2005;48(4):598-605.
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2005: Yuan Qiaoping; Ouyang Shu; Wang Aihui; Zhu Wei; Maiti Rama; Lin Haining; Hamilton John; Haas Brian; Sultana Razvan; Cheung Foo; Wortman Jennifer; Buell C Robin
The institute for genomic research Osa1 rice genome annotation database.
Plant physiology 2005;138(1):18-26.
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2005: Nagaki Kiyotaka; Neumann Pavel; Zhang Dongfen; Ouyang Shu; Buell C Robin; Cheng Zhukuan; Jiang Jiming
Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice.
Molecular biology and evolution 2005;22(4):845-55.
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2005: Rensink Willem Albert; Lee Yuandan; Liu Jia; Iobst Stacy; Ouyang Shu; Buell C Robin
Comparative analyses of six solanaceous transcriptomes reveal a high degree of sequence conservation and species-specific transcripts.
BMC genomics 2005;6():124.
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2004: Gill Bikram S; Appels Rudi; Botha-Oberholster Anna-Maria; Buell C Robin; Bennetzen Jeffrey L; Chalhoub Boulos; Chumley Forrest; Dvorák Jan; Iwanaga Masaru; Keller Beat; Li Wanlong; McCombie W Richard; Ogihara Yasunari; Quetier Francis; Sasaki Takuji
A workshop report on wheat genome sequencing: International Genome Research on Wheat Consortium.
Genetics 2004;168(2):1087-96.
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2004: Rensink W A; Buell C Robin
Arabidopsis to rice. Applying knowledge from a weed to enhance our understanding of a crop species.
Plant physiology 2004;135(2):622-9.
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2004: Nagaki Kiyotaka; Cheng Zhukuan; Ouyang Shu; Talbert Paul B; Kim Mary; Jones Kristine M; Henikoff Steven; Buell C Robin; Jiang Jiming
Sequencing of a rice centromere uncovers active genes.
Nature genetics 2004;36(2):138-45.
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2004: Ouyang Shu; Buell C Robin
The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants.
Nucleic acids research 2004;32(Database issue):D360-3.
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2003: Luo Ming-Cheng; Thomas Carolyn; You Frank M; Hsiao Joseph; Ouyang Shu; Buell C Robin; Malandro Marc; McGuire Patrick E; Anderson Olin D; Dvorak Jan
High-throughput fingerprinting of bacterial artificial chromosomes using the snapshot labeling kit and sizing of restriction fragments by capillary electrophoresis.
Genomics 2003;82(3):378-89.
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2003: Song Junqi; Bradeen James M; Naess S Kristine; Raasch John A; Wielgus Susan M; Haberlach Geraldine T; Liu Jia; Kuang Hanhui; Austin-Phillips Sandra; Buell C Robin; Helgeson John P; Jiang Jiming
Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(16):9128-33.
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2003: Bradeen J M; Naess S K; Song J; Haberlach G T; Wielgus S M; Buell C R; Jiang J; Helgeson J P
Concomitant reiterative BAC walking and fine genetic mapping enable physical map development for the broad-spectrum late blight resistance region, RB.
Molecular genetics and genomics : MGG 2003;269(5):603-11.
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2003: Buell C Robin; Sundaresan Venkatesan
A workshop on establishing a rice resource center in the United States.
Plant physiology 2003;132(3):1137.
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2003: Nagaki Kiyotaka; Song Junqi; Stupar Robert M; Parokonny Alexander S; Yuan Qiaoping; Ouyang Shu; Liu Jia; Hsiao Joseph; Jones Kristine M; Dawe R Kelly; Buell C Robin; Jiang Jiming
Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres.
Genetics 2003;163(2):759-70.
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2003: Ronning Catherine M; Stegalkina Svetlana S; Ascenzi Robert A; Bougri Oleg; Hart Amy L; Utterbach Teresa R; Vanaken Susan E; Riedmuller Steve B; White Joseph A; Cho Jennifer; Pertea Geo M; Lee Yuandan; Karamycheva Svetlana; Sultana Razvan; Tsai Jennifer; Quackenbush John; Griffiths Helen M; Restrepo Silvia; Smart Christine D; Fry William E; Van Der Hoeven Rutger; Tanksley Steve; Zhang Peifen; Jin Hailing; Yamamoto Miki L; Baker Barbara J; Buell C Robin
Comparative analyses of potato expressed sequence tag libraries.
Plant physiology 2003;131(2):419-29.
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2003: Yuan Qiaoping; Ouyang Shu; Liu Jia; Suh Bernard; Cheung Foo; Sultana Razvan; Lee Dan; Quackenbush John; Buell C Robin
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.
Nucleic acids research 2003;31(1):229-33.
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2002: Buell C Robin
Current status of the sequence of the rice genome and prospects for finishing the first monocot genome.
Plant physiology 2002;130(4):1585-6.
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2002: Buell C Robin
Obtaining the sequence of the rice genome and lessons learned along the way.
Trends in plant science 2002;7(12):538-42.
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2002: Yuan Q; Hill J; Hsiao J; Moffat K; Ouyang S; Cheng Z; Jiang J; Buell C R
Genome sequencing of a 239-kb region of rice chromosome 10L reveals a high frequency of gene duplication and a large chloroplast DNA insertion.
Molecular genetics and genomics : MGG 2002;267(6):713-20.
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2002: Cheng Zhukuan; Dong Fenggao; Langdon Tim; Ouyang Shu; Buell C Robin; Gu Minghong; Blattner Frederick R; Jiang Jiming
Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.
The Plant cell 2002;14(8):1691-704.
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2002: Petnicki-Ocwieja Tanja; Schneider David J; Tam Vincent C; Chancey Scott T; Shan Libo; Jamir Yashitola; Schechter Lisa M; Janes Misty D; Buell C Robin; Tang Xiaoyan; Collmer Alan; Alfano James R
Genomewide identification of proteins secreted by the Hrp type III protein secretion system of Pseudomonas syringae pv. tomato DC3000.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(11):7652-7.
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2002: Fouts Derrick E; Abramovitch Robert B; Alfano James R; Baldo Angela M; Buell C Robin; Cartinhour Samuel; Chatterjee Arun K; D'Ascenzo Mark; Gwinn Michelle L; Lazarowitz Sondra G; Lin Nai-Chun; Martin Gregory B; Rehm Amos H; Schneider David J; van Dijk Karin; Tang Xiaoyan; Collmer Alan
Genomewide identification of Pseudomonas syringae pv. tomato DC3000 promoters controlled by the HrpL alternative sigma factor.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(4):2275-80.
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2002: Cheng Zhukuan; Buell C Robin; Wing Rod A; Jiang Jiming
Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2002;10(5):379-87.
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2001: Cheng Z; Buell C R; Wing R A; Gu M; Jiang J
Toward a cytological characterization of the rice genome.
Genome research 2001;11(12):2133-41.
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2001: Stupar R M; Lilly J W; Town C D; Cheng Z; Kaul S; Buell C R; Jiang J
Complex mtDNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: implication of potential sequencing errors caused by large-unit repeats.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(9):5099-103.
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2001: Cheng Z; Presting G G; Buell C R; Wing R A; Jiang J
High-resolution pachytene chromosome mapping of bacterial artificial chromosomes anchored by genetic markers reveals the centromere location and the distribution of genetic recombination along chromosome 10 of rice.
Genetics 2001;157(4):1749-57.
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2001: Yuan Q; Quackenbush J; Sultana R; Pertea M; Salzberg S L; Buell C R
Rice bioinformatics. analysis of rice sequence data and leveraging the data to other plant species.
Plant physiology 2001;125(3):1166-74.
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