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Kenneth Buetow

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Oligonucleotide Array Sequence Analysis

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TOP 3
Rosemary Braun; Qing-Rong Chen; Michael N Edmonson; Richard Finney; Ying Hu; Daoud Meerzaman; Chunhua Yan; Kenneth H Buetow
Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients.
Bradford Hesse; Robert T Croyle; Kenneth H Buetow
Cyberinfrastructure and the biomedical sciences.
Michael N Edmonson; Jinghui Zhang; Chunhua Yan; Richard P Finney; Daoud M Meerzaman; Kenneth H Buetow
Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.

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2013: Rosemary Braun; Qing-Rong Chen; Michael N Edmonson; Richard Finney; Ying Hu; Daoud Meerzaman; Chunhua Yan; Kenneth H Buetow
Discovery Analysis of TCGA Data Reveals Association between Germline Genotype and Survival in Ovarian Cancer Patients.
PloS one 2013;8(3):e55037.
2011: Bradford Hesse; Robert T Croyle; Kenneth H Buetow
Cyberinfrastructure and the biomedical sciences.
American journal of preventive medicine 2011;40(5 Suppl 2):S97-102.
2011: Michael N Edmonson; Jinghui Zhang; Chunhua Yan; Richard P Finney; Daoud M Meerzaman; Kenneth H Buetow
Bambino: a variant detector and alignment viewer for next-generation sequencing data in the SAM/BAM format.
Bioinformatics (Oxford, England) 2011;27(6):865-6.
2011: Sol Efroni; Rotem Ben-Hamo; Michael Edmonson; Sharon Greenblum; Carl F Schaefer; Kenneth H Buetow
Detecting cancer gene networks characterized by recurrent genomic alterations in a population.
PloS one 2011;6(1):e14437.
2010: Robert J Clifford; Jinghui Zhang; Daoud M Meerzaman; Myung-Soo Lyu; Ying Hu; CM Cultraro; Richard P Finney; Jenny M Kelley; Sol Efroni; Sharon I Greenblum; Cu V Nguyen; William L Rowe; Sweta Sharma; Gang Wu; Chunhua Yan; Hongen Zhang; Young-Hwa Chung; Jeong A Kim; Neung Hwa Park; Il Han Song; Kenneth H Buetow
Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma.
Hepatology (Baltimore, Md.) 2010;52(6):2034-43.
2010: Barbara K Dunn; Mark H Greene; Ying Hu; Neely Kazerouni; Jenny M Kelley; Daoud M Meerzaman; Philip S Rosenberg; Gong Tang; Robert J Clifford; Joseph P Costantino; Kenneth H Buetow
Novel pathway analysis of genomic polymorphism-cancer risk interaction in the Breast Cancer Prevention Trial.
International journal of molecular epidemiology and genetics 2010;1(4):332-49.
2009: Kenneth H Buetow; John E Niederhuber
Infrastructure for a learning health care system: CaBIG.
Health affairs (Project Hope) 2009;28(3):923-4; author reply 924-5.
2008: Sol Efroni; Radharani Duttagupta; Jill Cheng; Hesam Dehghani; Daniel J Hoeppner; Chandravanu Dash; David P Bazett-Jones; Stuart Le Grice; Ronald D G McKay; Kenneth H Buetow; Thomas Gingeras; Tom Misteli; Eran Meshorer
Global transcription in pluripotent embryonic stem cells.
Cell stem cell 2008;2(5):437-47.
2007: Jinghui Zhang; Richard P Finney; William L Rowe; Michael N Edmonson; Sei-Hoon Yang; Tatiana Dracheva; Jin Jen; Jeffery Struewing; Kenneth H Buetow
Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB).
Genome research 2007;17(7):1111-7.
2007: Mitsutaka Kadota; Howard H Yang; Nan Hu; Chaoyu Wang; Ying Hu; Philip R Taylor; Kenneth H Buetow; Maxwell P Lee
Allele-specific chromatin immunoprecipitation studies show genetic influence on chromatin state in human genome.
PLoS genetics 2007;3(5):e81.
2007: Sol Efroni; Carl F Schaefer; Kenneth H Buetow
Identification of key processes underlying cancer phenotypes using biologic pathway analysis.
PloS one 2007;2(5):e425.
2006: Joseph Riss; Chand Khanna; Seongjoon Koo; Gadisetti V R Chandramouli; Howard H Yang; Ying Hu; David E Kleiner; Andreas Rosenwald; Carl F Schaefer; Shmuel A Ben-Sasson; Liming Yang; John Powell; David Kane; robert star; Olga Aprelikova; Kristin Bauer; James R Vasselli; Jodi K Maranchie; Kurt W Kohn; Kenneth H Buetow; W Marston Linehan; John N Weinstein; Maxwell P Lee; Richard D Klausner; J Carl Barrett
Cancers as wounds that do not heal: differences and similarities between renal regeneration/repair and renal cell carcinoma.
Cancer research 2006;66(14):7216-24.
2006: Nan Hu; Chaoyu Wang; Ying Hu; Howard H Yang; Li-Hui Kong; Ning Lu; Hua Su; Quan-Hong Wang; Alisa M Goldstein; Kenneth H Buetow; Michael R Emmert-Buck; Philip R Taylor; Maxwell P Lee
Genome-wide loss of heterozygosity and copy number alteration in esophageal squamous cell carcinoma using the Affymetrix GeneChip Mapping 10 K array.
BMC genomics 2006;7():299.
2006: Peisen Zhang; Jinghui Zhang; Huitao Sheng; James J Russo; Brian Osborne; Kenneth H Buetow
Gene functional similarity search tool (GFSST).
BMC bioinformatics 2006;7():135.
2005: Jinghui Zhang; David A Wheeler; Imtiaz Yakub; Sharon Wei; Raman Sood; William L Rowe; Paul P Liu; Richard A Gibbs; Kenneth H Buetow
SNPdetector: a software tool for sensitive and accurate SNP detection.
PLoS computational biology 2005;1(5):e53.
2005: Maxwell P Lee; Kevin Howcroft; Aparna Kotekar; Howard H Yang; Kenneth H Buetow; dinah singer
ATG deserts define a novel core promoter subclass.
Genome research 2005;15(9):1189-97.
2005: Kenneth H Buetow
Cyberinfrastructure: empowering a "third way" in biomedical research.
Science (New York, N.Y.) 2005;308(5723):821-4.
2005: Nan Hu; Chaoyu Wang; Ying Hu; Howard H Yang; Carol Giffen; Ze-Zhong Tang; Xiao-Yu Han; Alisa M Goldstein; Michael R Emmert-Buck; Kenneth H Buetow; Philip R Taylor; Maxwell P Lee
Genome-wide association study in esophageal cancer using GeneChip mapping 10K array.
Cancer research 2005;65(7):2542-6.
2005: Jinghui Zhang; Richard P Finney; Robert J Clifford; Leslie K Derr; Kenneth H Buetow
Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach.
Genomics 2005;85(3):297-308.
2005: Jinghui Zhang; Kent W Hunter; Michael Gandolph; William L Rowe; Richard P Finney; Jenny M Kelley; Michael N Edmonson; Kenneth H Buetow
A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns.
Genome research 2005;15(2):241-9.
2005: Kevin Dobbin; David G Beer; Matthew Meyerson; Timothy J Yeatman; William L Gerald; James W Jacobson; BA Conley; Kenneth H Buetow; Mervi Heiskanen; Richard M Simon; John D Minna; Luc Girard; David E Misek; Jeremy Taylor; Samir Hanash; Katsuhiko Naoki; David Hayes; Christine Ladd-Acosta; Steven A Enkemann; Agnes Viale; Thomas J Giordano
Interlaboratory comparability study of cancer gene expression analysis using oligonucleotide microarrays.
Clinical cancer research : an official journal of the American Association for Cancer Research 2005;11(2 Pt 1):565-72.
2005: Katherine A McGlynn; Lori Sakoda; Ying Hu; Robert E Schoen; Robert S Bresalier; Meredith Yeager; STEPHEN CHANOCK; Richard Hayes; Kenneth H Buetow
Hemochromatosis gene mutations and distal adenomatous colorectal polyps.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2005;14(1):158-63.
2004: Junya Fukuoka; Takeshi Fujii; Joanna H Shih; Tatiana Dracheva; Daoud Meerzaman; Audrey Player; Kyeong Hong; Sharon Settnek; Ajay Gupta; Kenneth H Buetow; Stephen Hewitt; William D Travis; Jin Jen
Chromatin remodeling factors and BRM/BRG1 expression as prognostic indicators in non-small cell lung cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2004;10(13):4314-24.
2004: Howard H Yang; Ying Hu; Kenneth H Buetow; Maxwell P Lee
A computational approach to measuring coherence of gene expression in pathways.
Genomics 2004;84(1):211-7.
2004: Robert J Clifford; Michael N Edmonson; Cu Nguyen; Titia Scherpbier; Ying Hu; Kenneth H Buetow
Bioinformatics tools for single nucleotide polymorphism discovery and analysis.
Annals of the New York Academy of Sciences 2004;1020():101-9.
2004: Robert J Clifford; Michael N Edmonson; Cu Nguyen; Kenneth H Buetow
Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.
Bioinformatics (Oxford, England) 2004;20(7):1006-14.
2004: Zhining Wang; Hongtao Fan; Howard H Yang; Ying Hu; Kenneth H Buetow; Maxwell P Lee
Comparative sequence analysis of imprinted genes between human and mouse to reveal imprinting signatures.
Genomics 2004;83(3):395-401.
2004: Kenneth H Buetow
The NCI Center for Bioinformatics (NCICB): building a foundation for in silico biomedical research.
Cancer investigation 2004;22(1):117-22.
2004: Zhen Xiao; Thomas P Conrads; David A Lucas; George Janini; Carl F Schaefer; Kenneth H Buetow; Haleem J Issaq; Timothy D Veenstra
Direct ampholyte-free liquid-phase isoelectric peptide focusing: application to the human serum proteome.
Electrophoresis 2004;25(1):128-33.
2003: Peter A Covitz; Frank W Hartel; Carl Schaefer; Sherri de Coronado; Gilberto Fragoso; Himanso Sahni; Scott Gustafson; Kenneth H Buetow
caCORE: a common infrastructure for cancer informatics.
Bioinformatics (Oxford, England) 2003;19(18):2404-12.
2003: Jinghui Zhang; William L Rowe; andrew clark; Kenneth H Buetow
Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations.
American journal of human genetics 2003;73(5):1073-81.
2003: Ya-Yu Tsai; Katherine A McGlynn; Ying Hu; Anna B Cassidy; John Arnold; Paul F Engstrom; Kenneth H Buetow
Genetic susceptibility and dietary patterns in lung cancer.
Lung cancer (Amsterdam, Netherlands) 2003;41(3):269-81.
2003: Katherine A McGlynn; Kent Hunter; Thomas LeVoyer; Jessica Roush; Philip Wise; Rita A Michielli; Fu-Min Shen; Alison A Evans; W Thomas London; Kenneth H Buetow
Susceptibility to aflatoxin B1-related primary hepatocellular carcinoma in mice and humans.
Cancer research 2003;63(15):4594-601.
2003: H Shuen Lo; Zhining Wang; Ying Hu; Howard H Yang; Sheryl Gere; Kenneth H Buetow; Maxwell P Lee
Allelic variation in gene expression is common in the human genome.
Genome research 2003;13(8):1855-62.
2003: Lynn R Goldin; Naoko Ishibe; Maria Sgambati; Gerald E Marti; Laura Fontaine; Maxwell P Lee; Jenny M Kelley; Titia Scherpbier; Kenneth H Buetow; Neil E Caporaso
A genome scan of 18 families with chronic lymphocytic leukaemia.
British journal of haematology 2003;121(6):866-73.
2003: Howard H Yang; Ying Hu; Michael N Edmonson; Kenneth H Buetow; Maxwell P Lee
Computation method to identify differential allelic gene expression and novel imprinted genes.
Bioinformatics (Oxford, England) 2003;19(8):952-5.
2003: Zhining Wang; H Shuen Lo; Howard Yang; Sheryl Gere; Ying Hu; Kenneth H Buetow; Maxwell P Lee
Computational analysis and experimental validation of tumor-associated alternative RNA splicing in human cancer.
Cancer research 2003;63(3):655-7.
2003: Tzu-Ling Tseng; Yi-Ping Shih; Yu-Chuen Huang; Chung-Kwe Wang; Pao-Huei Chen; Tai-Heng Chen; Kun-Tu Yeh; Yi-Ming Arthur Chen; Kenneth H Buetow
Genotypic and phenotypic characterization of a putative tumor susceptibility gene, GNMT, in liver cancer.
Cancer research 2003;63(3):647-54.
2003: F Xu; H Sahni; S Settnek; A Gupta; J Phillips; D Zhang; J Beasley; Sherri de Coronado; U Wagner; K Rosso; K Malone; D Singer; C Marks; B Tarnowski; Kenneth H Buetow
Mouse models of human cancer web-based resources.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():1056.
2003: Yeong-Gwon Park; Robert J Clifford; Kenneth H Buetow; Kent W Hunter
Multiple cross and inbred strain haplotype mapping of complex-trait candidate genes.
Genome research 2003;13(1):118-21.
2002: Jinghui Zhang; William L Rowe; Jeffery Struewing; Kenneth H Buetow
HapScope: a software system for automated and visual analysis of functionally annotated haplotypes.
Nucleic acids research 2002;30(23):5213-21.
2002: Katherine A McGlynn; Michael N Edmonson; Rita A Michielli; W Thomas London; Wen Yao Lin; Gong-Chao Chen; Fu-Min Shen; Kenneth H Buetow
A phylogenetic analysis identifies heterogeneity among hepatocellular carcinomas.
Hepatology (Baltimore, Md.) 2002;36(6):1341-8.
2002: Kathy Boon; Elisson C Osorio; Susan F Greenhut; Carl F Schaefer; Jennifer Shoemaker; Kornelia Polyak; Patrice J Morin; Kenneth H Buetow; Robert L Strausberg; Sandro J de Souza; Gregory J Riggins
An anatomy of normal and malignant gene expression.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(17):11287-92.
2002: Christian Iseli; Brian J Stevenson; Sandro J de Souza; Helena B Samaia; Anamaria A Camargo; Kenneth H Buetow; Robert L Strausberg; Andrew J G Simpson; Philipp Bucher; Victor Jongeneel
Long-range heterogeneity at the 3' ends of human mRNAs.
Genome research 2002;12(7):1068-74.
2002: Takeshi Fujii; Tatiana Dracheva; Audrey Player; Susan Chacko; Robert J Clifford; Robert L Strausberg; Kenneth H Buetow; Norio Azumi; William D Travis; Jin Jen
A preliminary transcriptome map of non-small cell lung cancer.
Cancer research 2002;62(12):3340-6.
2002: Kenneth H Buetow; Richard D Klausner; Howard A Fine; Richard S. Kaplan; dinah singer; Robert L Strausberg
Cancer Molecular Analysis Project: weaving a rich cancer research tapestry.
Cancer cell 2002;1(4):315-8.
2002: Robert L Strausberg; Kenneth H Buetow; Susan F Greenhut; Lynette H Grouse; Carl F Schaefer
The cancer genome anatomy project: online resources to reveal the molecular signatures of cancer.
Cancer investigation 2002;20(7-8):1038-50.
2002: Robert L Strausberg; Anamaria A Camargo; Gregory J Riggins; Carl F Schaefer; Sandro J de Souza; Lynette H Grouse; A Lal; Kenneth H Buetow; Kathy Boon; Susan F Greenhut; Andrew J G Simpson
An international database and integrated analysis tools for the study of cancer gene expression.
The pharmacogenomics journal 2002;2(3):156-64.
2001: Mariana Nacht; Tatiana Dracheva; Y Gao; T Fujii; Y Chen; Audrey Player; Viatcheslav R Akmaev; Brian Cook; Michael R Dufault; Mindy Zhang; Wen Zhang; Mingzhou Guo; J Curran; S Han; David Sidransky; Kenneth H Buetow; Stephen L Madden; Jin Jen
Molecular characteristics of non-small cell lung cancer.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(26):15203-8.
2001: Robert L Strausberg; Susan F Greenhut; Lynette H Grouse; Carl F Schaefer; Kenneth H Buetow
In silico analysis of cancer through the Cancer Genome Anatomy Project.
Trends in cell biology 2001;11(11):S66-71.
2001: Montserrat García-Closas; Kathleen M Egan; J Abruzzo; Polly A Newcomb; Linda Titus-Ernstoff; Tracie Franklin; Patrick Bender; JC Beck; Loïc Le Marchand; A Lum; Michael C R Alavanja; Richard Hayes; J Rutter; Kenneth H Buetow; Louise A Brinton; Nathaniel Rothman
Collection of genomic DNA from adults in epidemiological studies by buccal cytobrush and mouthwash.
Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology 2001;10(6):687-96.
2001: Kenneth H Buetow; Michael N Edmonson; R MacDonald; Robert J Clifford; Ping Yip; J Kelley; Daniel P Little; Robert L Strausberg; H Koester; Charles R Cantor; Andreas Braun
High-throughput development and characterization of a genomewide collection of gene-based single nucleotide polymorphism markers by chip-based matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(2):581-4.
2001: Nathaniel Rothman; Sholom Wacholder; Neil E Caporaso; Montserrat Garcia-Closas; Kenneth H Buetow; Joseph Fraumeni
The use of common genetic polymorphisms to enhance the epidemiologic study of environmental carcinogens.
Biochimica et biophysica acta 2001;1471(2):C1-10.
2001: C Schaefer; Lynette H Grouse; Kenneth H Buetow; Robert L Strausberg
A new cancer genome anatomy project web resource for the community.
Cancer journal (Sudbury, Mass.) 2001;7(1):52-60.
2000: Robert J Clifford; Michael N Edmonson; Ying Hu; Cu Nguyen; Titia Scherpbier; Kenneth H Buetow
Expression-based genetic/physical maps of single-nucleotide polymorphisms identified by the cancer genome anatomy project.
Genome research 2000;10(8):1259-65.
2000: Robert L Strausberg; Kenneth H Buetow; Michael R Emmert-Buck; Richard D Klausner
The cancer genome anatomy project: building an annotated gene index.
Trends in genetics : TIG 2000;16(3):103-6.
1999: Kenneth H Buetow; Michael N Edmonson; A B Cassidy
Reliable identification of large numbers of candidate SNPs from public EST data.
Nature genetics 1999;21(3):323-5.
1998: Kenneth J Holroyd; LC Martinati; Elisabetta Trabetti; Titia Scherpbier; Scott M Eleff; A L Boner; Pier Franco Pignatti; MB Kiser; Carl Dragwa; F Hubbard; Christine D Sullivan; Luigi Grasso; CJ Messler; Minxue Huang; Ying Hu; Nicholas C Nicolaides; Kenneth H Buetow; Roy Levitt
Asthma and bronchial hyperresponsiveness linked to the XY long arm pseudoautosomal region.
Genomics 1998;52(2):233-5.
1997: Nicholas C Nicolaides; Kenneth J Holroyd; Susan L Ewart; Scott M Eleff; MB Kiser; Carl Dragwa; Christine D Sullivan; Luigi Grasso; Liu-Yi Zhang; CJ Messler; T Zhou; Steven R Kleeberger; Kenneth H Buetow; Roy Levitt
Interleukin 9: a candidate gene for asthma.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(24):13175-80.