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robin gutell

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Escherichia coli

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Yanping P Chen; Jay Evans; Charles Murphy; robin gutell; Michael Zuker; Dawn Gundensen-Rindal; Jeff S Pettis
Morphological, molecular, and phylogenetic characterization of Nosema ceranae, a microsporidian parasite isolated from the European honey bee, Apis mellifera.
P Babin; M Dolan; Paul Wollenzien; robin gutell
Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling.
Graeme L Conn; robin gutell; David E Draper
A functional ribosomal RNA tertiary structure involves a base triple interaction.

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All Publications

2009: Yanping P Chen; Jay Evans; Charles Murphy; robin gutell; Michael Zuker; Dawn Gundensen-Rindal; Jeff S Pettis
Morphological, molecular, and phylogenetic characterization of Nosema ceranae, a microsporidian parasite isolated from the European honey bee, Apis mellifera.
The Journal of eukaryotic microbiology 2009;56(2):142-7.
1999: P Babin; M Dolan; Paul Wollenzien; robin gutell
Identity and geometry of a base triple in 16S rRNA determined by comparative sequence analysis and molecular modeling.
RNA (New York, N.Y.) 1999;5(11):1430-9.
1998: Graeme L Conn; robin gutell; David E Draper
A functional ribosomal RNA tertiary structure involves a base triple interaction.
Biochemistry 1998;37(34):11980-8.
1998: L Ortoleva-Donnelly; Alexander A Szewczak; robin gutell; Scott A Strobel
The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme.
RNA (New York, N.Y.) 1998;4(5):498-519.
1997: Jun Li; robin gutell; S H Damberger; RA Wirtz; Jessica Kissinger; Martin Rogers; Jetsumon Sattabongkot; Thomas F McCutchan
Regulation and trafficking of three distinct 18 S ribosomal RNAs during development of the malaria parasite.
Journal of molecular biology 1997;269(2):203-13.
1996: Mark A Ragan; C L Goggin; R J Cawthorn; Lage Cerenius; A V Jamieson; S M Plourde; T G Rand; Kenneth Söderhäll; robin gutell
A novel clade of protistan parasites near the animal-fungal divergence.
Proceedings of the National Academy of Sciences of the United States of America 1996;93(21):11907-12.
1996: M Picón; robin gutell; R Ehrlich; Arnaldo Zaha
Characterization of a flatworm ribosomal RNA-encoding gene: promoter sequence and small subunit rRNA secondary structure.
Gene 1996;171(2):215-20.
1996: M A Buchheim; Claude Lemieux; Christian Otis; robin gutell; R L Chapman; Monique Turmel
Phylogeny of the Chlamydomonadales (Chlorophyceae): a comparison of ribosomal RNA gene sequences from the nucleus and the chloroplast.
Molecular phylogenetics and evolution 1996;5(2):391-402.
1996: Murray N Schnare; S H Damberger; Michael W Gray; robin gutell
Comprehensive comparison of structural characteristics in eukaryotic cytoplasmic large subunit (23 S-like) ribosomal RNA.
Journal of molecular biology 1996;256(4):701-19.
1996: Martin Rogers; robin gutell; S H Damberger; Jun Li; G A McConkey; A P Waters; Thomas F McCutchan
Structural features of the large subunit rRNA expressed in Plasmodium falciparum sporozoites that distinguish it from the asexually expressed subunit rRNA.
RNA (New York, N.Y.) 1996;2(2):134-45.
1996: D S Fields; robin gutell
An analysis of large rRNA sequences folded by a thermodynamic method.
Folding & design 1996;1(6):419-30.
1995: J S Lodmell; robin gutell; Albert E Dahlberg
Genetic and comparative analyses reveal an alternative secondary structure in the region of nt 912 of Escherichia coli 16S rRNA.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(23):10555-9.
1995: Nam W Kim; robin gutell; Voon Loong Chan
Complete sequences and organization of the rrnA operon from campylobacter jejuni TGH9011 (ATCC43431).
Gene 1995;164(1):101-6.
1995: D Gautheret; D Konings; robin gutell
G.U base pairing motifs in ribosomal RNA.
RNA (New York, N.Y.) 1995;1(8):807-14.
1995: D A Konings; robin gutell
A comparison of thermodynamic foldings with comparatively derived structures of 16S and 16S-like rRNAs.
RNA (New York, N.Y.) 1995;1(6):559-74.
1995: M Fan; L C Chen; Mark A Ragan; robin gutell; Jonathan R Warner; Brian Currie; Arturo Casadevall
The 5S rRNA and the rRNA intergenic spacer of the two varieties of Cryptococcus neoformans.
Journal of medical and veterinary mycology : bi-monthly publication of the International Society for Human and Animal Mycology 1995;33(4):215-21.
1995: D Gautheret; S H Damberger; robin gutell
Identification of base-triples in RNA using comparative sequence analysis.
Journal of molecular biology 1995;248(1):27-43.
1994: Thyagarajan Srikantha; robin gutell; B Morrow; David Soll
Partial nucleotide sequence of a single ribosomal RNA coding region and secondary structure of the large subunit 25 s rRNA of Candida albicans.
Current genetics 1994;26(4):321-8.
1994: D Gautheret; D Konings; robin gutell
A major family of motifs involving G.A mismatches in ribosomal RNA.
Journal of molecular biology 1994;242(1):1-8.
1994: S H Damberger; robin gutell
A comparative database of group I intron structures.
Nucleic acids research 1994;22(17):3508-10.
1994: robin gutell
Collection of small subunit (16S- and 16S-like) ribosomal RNA structures: 1994.
Nucleic acids research 1994;22(17):3502-7.
1994: Trevor John Trust; S M Logan; C E Gustafson; P J Romaniuk; Nam W Kim; Voon Loong Chan; Mark A Ragan; Patricia Guerry; robin gutell
Phylogenetic and molecular characterization of a 23S rRNA gene positions the genus Campylobacter in the epsilon subdivision of the Proteobacteria and shows that the presence of transcribed spacers is common in Campylobacter spp.
Journal of bacteriology 1994;176(15):4597-609.
1994: Mark A Ragan; C J Bird; E L Rice; robin gutell; C A Murphy; R K Singh
A molecular phylogeny of the marine red algae (Rhodophyta) based on the nuclear small-subunit rRNA gene.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(15):7276-80.
1994: Thomas R Cech; S H Damberger; robin gutell
Representation of the secondary and tertiary structure of group I introns.
Nature structural biology 1994;1(5):273-80.
1994: robin gutell; N Larsen; C R Woese
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.
Microbiological reviews 1994;58(1):10-26.
1994: M Fan; Brian Currie; robin gutell; Mark A Ragan; Arturo Casadevall
The 16S-like, 5.8S and 23S-like rRNAs of the two varieties of Cryptococcus neoformans: sequence, secondary structure, phylogenetic analysis and restriction fragment polymorphisms.
Journal of medical and veterinary mycology : bi-monthly publication of the International Society for Human and Animal Mycology 1994;32(3):163-80.
1993: Monique Turmel; robin gutell; J P Mercier; Christian Otis; Claude Lemieux
Analysis of the chloroplast large subunit ribosomal RNA gene from 17 Chlamydomonas taxa. Three internal transcribed spacers and 12 group I intron insertion sites.
Journal of molecular biology 1993;232(2):446-67.
1993: robin gutell; Michael W Gray; Murray N Schnare
A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993.
Nucleic acids research 1993;21(13):3055-74.
1993: robin gutell
Collection of small subunit (16S- and 16S-like) ribosomal RNA structures.
Nucleic acids research 1993;21(13):3051-4.
1993: Harry van Keulen; robin gutell; M A Gates; S R Campbell; Stanley L Erlandsen; Edward L Jarroll; J Kulda; E A Meyer
Unique phylogenetic position of Diplomonadida based on the complete small subunit ribosomal RNA sequence of Giardia ardeae, G. muris, G. duodenalis and Hexamita sp.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 1993;7(1):223-31.
1992: robin gutell; A Power; G Z Hertz; E J Putz; Gary stormo
Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.
Nucleic acids research 1992;20(21):5785-95.
1992: Harry van Keulen; robin gutell; S R Campbell; Stanley L Erlandsen; Edward L Jarroll
The nucleotide sequence of the entire ribosomal DNA operon and the structure of the large subunit rRNA of Giardia muris.
Journal of molecular evolution 1992;35(4):318-28.
1992: robin gutell; Murray N Schnare; Michael W Gray
A compilation of large subunit (23S- and 23S-like) ribosomal RNA structures.
Nucleic acids research 1992;20 Suppl():2095-109.
1992: Debopam Chakrabarti; John B Dame; robin gutell; Charles A Yowell
Characterization of the rDNA unit and sequence analysis of the small subunit rRNA and 5.8S rRNA genes from Tritrichomonas foetus.
Molecular and biochemical parasitology 1992;52(1):75-83.
1991: T Pan; robin gutell; Olke C Uhlenbeck
Folding of circularly permuted transfer RNAs.
Science (New York, N.Y.) 1991;254(5036):1361-4.
1990: Carl R Woese; S Winker; robin gutell
Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops".
Proceedings of the National Academy of Sciences of the United States of America 1990;87(21):8467-71.
1990: robin gutell; Murray N Schnare; Michael W Gray
A compilation of large subunit (23S-like) ribosomal RNA sequences presented in a secondary structure format.
Nucleic acids research 1990;18 Suppl():2319-30.
1990: robin gutell; Carl R Woese
Higher order structural elements in ribosomal RNAs: pseudo-knots and the use of noncanonical pairs.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(2):663-7.
1989: T Haselman; robin gutell; J Jurka; George Fox
Additional Watson-Crick interactions suggest a structural core in large subunit ribosomal RNA.
Journal of biomolecular structure & dynamics 1989;7(1):181-6.
1989: Carl R Woese; robin gutell
Evidence for several higher order structural elements in ribosomal RNA.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(9):3119-22.
1988: robin gutell; George Fox
A compilation of large subunit RNA sequences presented in a structural format.
Nucleic acids research 1988;16 Suppl():r175-269.
1986: robin gutell; Harry F Noller; C R Woese
Higher order structure in ribosomal RNA.
The EMBO journal 1986;5(5):1111-3.
1985: P Sloof; J Van den Burg; A Voogd; Rob Benne; M Agostinelli; P Borst; robin gutell; Harry F Noller
Further characterization of the extremely small mitochondrial ribosomal RNAs from trypanosomes: a detailed comparison of the 9S and 12S RNAs from Crithidia fasciculata and Trypanosoma brucei with rRNAs from other organisms.
Nucleic acids research 1985;13(11):4171-90.
1985: robin gutell; B Weiser; C R Woese; Harry F Noller
Comparative anatomy of 16-S-like ribosomal RNA.
Progress in nucleic acid research and molecular biology 1985;32():155-216.
1984: J J Hogan; robin gutell; Harry F Noller
Probing the conformation of 26S rRNA in yeast 60S ribosomal subunits with kethoxal.
Biochemistry 1984;23(14):3330-5.
1984: J J Hogan; robin gutell; Harry F Noller
Probing the conformation of 18S rRNA in yeast 40S ribosomal subunits with kethoxal.
Biochemistry 1984;23(14):3322-30.
1984: J J Seilhamer; robin gutell; D J Cummings
Paramecium mitochondrial genes. II. Large subunit rRNA gene sequence and microevolution.
The Journal of biological chemistry 1984;259(8):5173-81.
1984: Y L Chan; robin gutell; Harry F Noller; I G Wool
The nucleotide sequence of a rat 18 S ribosomal ribonucleic acid gene and a proposal for the secondary structure of 18 S ribosomal ribonucleic acid.
The Journal of biological chemistry 1984;259(1):224-30.
1983: C R Woese; robin gutell; R Gupta; Harry F Noller
Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids.
Microbiological reviews 1983;47(4):621-69.
1981: Harry F Noller; J Kop; V Wheaton; J Brosius; robin gutell; A M Kopylov; F Dohme; W Herr; D A Stahl; R Gupta; C R Waese
Secondary structure model for 23S ribosomal RNA.
Nucleic acids research 1981;9(22):6167-89.
1981: J Brosius; A Ullrich; M A Raker; A Gray; T J Dull; robin gutell; Harry F Noller
Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli.
Plasmid 1981;6(1):112-8.
1981: R E Kingston; robin gutell; A R Taylor; M J Chamberlin
Transcriptional mapping of plasmid pKK3535. Quantitation of the effect of guanosine tetraphosphate on binding to the rrnB promoters and a lambda promoter with sequence homologies in the CII binding region.
Journal of molecular biology 1981;146(4):433-49.
1980: C R Woese; L J Magrum; R Gupta; R B Siegel; D A Stahl; J Kop; N Crawford; J Brosius; robin gutell; J J Hogan; Harry F Noller
Secondary structure model for bacterial 16S ribosomal RNA: phylogenetic, enzymatic and chemical evidence.
Nucleic acids research 1980;8(10):2275-93.