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Shawn Levy

Research Profile

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Oligonucleotide Array Sequence Analysis

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Genes & Molecular Sequences

Single Nucleotide Polymorphism

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TOP 3
Bin Xu; Braden Boone; Joseph A Gogos; Iuliana Ionita-Laza; Shawn Levy; J Louw Roos; Yan Sun; Scarlet Woodrick; Maria Karayiorgou
De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia.
Bin Xu; Shawn Levy; Brooks Plummer; J Louw Roos; Braden Boone; Phillip Dexheimer; Joseph A Gogos; Maria Karayiorgou
Exome sequencing supports a de novo mutational paradigm for schizophrenia.
Jeffrey A Canter; Gregory K Robbins; Doug Selph; David B Clifford; Asha R Kallianpur; Robert Shafer; Shawn Levy; Deborah G Murdock; Marylyn Ritchie; David W Haas; Todd Hulgan
African mitochondrial DNA subhaplogroups and peripheral neuropathy during antiretroviral therapy.

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All Publications

2012: Bin Xu; Braden Boone; Joseph A Gogos; Iuliana Ionita-Laza; Shawn Levy; J Louw Roos; Yan Sun; Scarlet Woodrick; Maria Karayiorgou
De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia.
Nature genetics 2012;44(12):1365-9.
2011: Bin Xu; Shawn Levy; Brooks Plummer; J Louw Roos; Braden Boone; Phillip Dexheimer; Joseph A Gogos; Maria Karayiorgou
Exome sequencing supports a de novo mutational paradigm for schizophrenia.
Nature genetics 2011;43(9):864-8.
2010: Jeffrey A Canter; Gregory K Robbins; Doug Selph; David B Clifford; Asha R Kallianpur; Robert Shafer; Shawn Levy; Deborah G Murdock; Marylyn Ritchie; David W Haas; Todd Hulgan
African mitochondrial DNA subhaplogroups and peripheral neuropathy during antiretroviral therapy.
The Journal of infectious diseases 2010;201(11):1703-7.
2010: A L Young; Shawn Levy; M Nighland; R Grossman; David N Silvers; Julide Tok Celebi
Are dark-skinned people really protected from ultraviolet radiation?
Clinical and experimental dermatology 2010;35(4):392-6.
2010: J Joshua Smith; Natasha G Deane; Fei Wu; Nipun B Merchant; Bing Zhang; Aixiang Jiang; Pengcheng Lu; J Chad Johnson; Carl Schmidt; Christina E Bailey; Steven Eschrich; Christian Kis; Shawn Levy; M Kay Washington; Martin J Heslin; Robert J Coffey; Timothy J Yeatman; Yu Shyr; R Daniel Beauchamp
Experimentally derived metastasis gene expression profile predicts recurrence and death in patients with colon cancer.
Gastroenterology 2010;138(3):958-68.
2009: Yao-Zhong Liu; Y-F Pei; Yan-Fang Guo; L Wang; X-G Liu; H Yan; Dong-Hai Xiong; Y-P Zhang; Shawn Levy; J Li; C Keith Haddock; Christopher J Papasian; Q Xu; J Z Ma; T J Payne; Robert R Recker; M D Li; Hong-Wen Deng
Genome-wide association analyses suggested a novel mechanism for smoking behavior regulated by IL15.
Molecular psychiatry 2009;14(7):668-80.
2009: Yao-Zhong Liu; Yan-Fang Guo; Liang Wang; Li-Jun Tan; Xiao-Gang Liu; Yu-Fang Pei; Han Yan; Dong-Hai Xiong; Fei-Yan Deng; Na Yu; Yin-Ping Zhang; Lei Zhang; Shu-Feng Lei; Xiang-Ding Chen; Hong-Bin Liu; Xue-Zhen Zhu; Shawn Levy; Christopher J Papasian; Betty M Drees; James J Hamilton; Robert R Recker; Hong-Wen Deng
Genome-wide association analyses identify SPOCK as a key novel gene underlying age at menarche.
PLoS genetics 2009;5(3):e1000420.
2009: Dong-Hai Xiong; Xiao-Gang Liu; Yan-Fang Guo; Li-Jun Tan; Liang Wang; Bao-Yong Sha; Zi-Hui Tang; Feng Pan; Tie-Lin Yang; Xiang-Ding Chen; Shu-Feng Lei; Laura Yerges-Armstrong; Xue-Zen Zhu; Victor W Wheeler; Alan L Patrick; Clareann H Bunker; Yan Guo; Han Yan; Yu-Fang Pei; Yin-Pin Zhang; Shawn Levy; Christopher J Papasian; Peng Xiao; Y Wang Lundberg; Robert R Recker; Yao-Zhong Liu; Yong-Jun Liu; Joseph Zmuda; Hong-Wen Deng
Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.
American journal of human genetics 2009;84(3):388-98.
2009: Wei Zheng; Jirong Long; Yu-Tang Gao; Chun Li; Ying Zheng; Yong-Bing Xiang; Wanqing Wen; Shawn Levy; Sandra L Deming; Jonathan L Haines; Kai Gu; Alecia S. Malin Fair; Qiuyin Cai; Wei Lu; Xiao-Ou Shu
Genome-wide association study identifies a new breast cancer susceptibility locus at 6q25.1.
Nature genetics 2009;41(3):324-8.
2009: Jian Li; Tielin Yang; Liang Wang; Han Yan; Yinping Zhang; Yan Guo; Feng Pan; Zhixin Zhang; Yumei Peng; Qi Zhou; Lina He; Xuezhen Zhu; Hongyi Deng; Shawn Levy; Christopher J Papasian; Betty M Drees; James J Hamilton; Robert R Recker; Jing Cheng; Hong-Wen Deng
Whole genome distribution and ethnic differentiation of copy number variation in Caucasian and Asian populations.
PloS one 2009;4(11):e7958.
2009: Yao-Zhong Liu; Yu-Fang Pei; Jian-Feng Liu; Fang Yang; Yan Guo; Lei Zhang; Xiao-Gang Liu; Han Yan; Liang Wang; Yin-Ping Zhang; Shawn Levy; Robert R Recker; Hong-Wen Deng
Powerful bivariate genome-wide association analyses suggest the SOX6 gene influencing both obesity and osteoporosis phenotypes in males.
PloS one 2009;4(8):e6827.
2008: Alicia Beeghly-Fadiel; Ji-Rong Long; Yu-Tang Gao; Chun Li; Shimian Qu; Qiuyin Cai; Ying Zheng; Zhi-Xian Ruan; Shawn Levy; Sandra L Deming; Jay R Snoddy; Xiao-Ou Shu; Wei Lu; Wei Zheng
Common MMP-7 polymorphisms and breast cancer susceptibility: a multistage study of association and functionality.
Cancer research 2008;68(15):6453-9.
2008: Cindy L Kanies; J Joshua Smith; Christian Kis; Carl Schmidt; Shawn Levy; Khalid S A Khabar; Jason Morrow; Natasha G Deane; Dan A. Dixon; R Daniel Beauchamp
Oncogenic Ras and transforming growth factor-beta synergistically regulate AU-rich element-containing mRNAs during epithelial to mesenchymal transition.
Molecular cancer research : MCR 2008;6(7):1124-36.
2008: Bin Xu; J Louw Roos; Shawn Levy; E J van Rensburg; Joseph A Gogos; Maria Karayiorgou
Strong association of de novo copy number mutations with sporadic schizophrenia.
Nature genetics 2008;40(7):880-5.
2008: Vaidya Subramaniam; Pawel Golik; Deborah G Murdock; Shawn Levy; Keith W Kerstann; Pinar E Coskun; Goarik A Melkonian; Douglas C Wallace
MITOCHIP assessment of differential gene expression in the skeletal muscle of Ant1 knockout mice: coordinate regulation of OXPHOS, antioxidant, and apoptotic genes.
Biochimica et biophysica acta 2008;1777(7-8):666-75.
2008: Yong-Jun Liu; Xiao-Gang Liu; Liang Wang; Christian Dina; Han Yan; Jian-Feng Liu; Shawn Levy; Christopher J Papasian; Betty M Drees; James J Hamilton; David Meyre; Jerome Delplanque; Yu-Fang Pei; Lei Zhang; Robert R Recker; philippe froguel; Hong-Wen Deng
Genome-wide association scans identified CTNNBL1 as a novel gene for obesity.
Human molecular genetics 2008;17(12):1803-13.
2008: Yao-Zhong Liu; Scott G Wilson; Liang Wang; Xiao-Gang Liu; Yan-Fang Guo; Jian Li; Han Yan; Panos Deloukas; Nicole Soranzo; Usha Chinappen-Horsley; Usha Chinnapen-Horsley; Alessandra Cervino; Alesandra Cervino; Frances M Williams; Dong-Hai Xiong; Yin-Ping Zhang; Tian-bo Jin; Shawn Levy; Christopher J Papasian; Betty M Drees; James J Hamilton; Robert R Recker; Tim D Spector; Hong-Wen Deng
Identification of PLCL1 gene for hip bone size variation in females in a genome-wide association study.
PloS one 2008;3(9):e3160.
2008: Laura Wilding Crawford; Elizabeth Tweedie Ables; Young Ah Oh; Braden Boone; Shawn Levy; Maureen Gannon
Gene expression profiling of a mouse model of pancreatic islet dysmorphogenesis.
PloS one 2008;3(2):e1611.
2008: Joseph D Watson; Shenglong Wang; Stephen E Von Stetina; W Clay Spencer; Shawn Levy; Phillip J Dexheimer; Nurith Kurn; Joe Don Heath; David M Miller
Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system.
BMC genomics 2008;9():84.
2007: Mark Chin; Alex B Geng; Arshad H Khan; Wei-Jun Qian; Vladislav A Petyuk; Jyl Boline; Shawn Levy; Arthur W Toga; Richard D Smith; Richard M Leahy; Desmond J Smith
A genome-scale map of expression for a mouse brain section obtained using voxelation.
Physiological genomics 2007;30(3):313-21.
2007: James A S Muldowney; John R Stringham; Shawn Levy; Linda A Gleaves; Mesut Eren; Robert N Piana; Douglas E Vaughan
Antiproliferative agents alter vascular plasminogen activator inhibitor-1 expression: a potential prothrombotic mechanism of drug-eluting stents.
Arteriosclerosis, thrombosis, and vascular biology 2007;27(2):400-6.
2007: Lewis Frey; Mary Edgerton; Douglas Fisher; Shawn Levy
Ensemble stump classifiers and gene expression signatures in lung cancer.
Studies in health technology and informatics 2007;129(Pt 2):1255-9.
2007: Christine H Chung; Joel Parker; Shawn Levy; Robbert J C Slebos; Adam Dicker; Ulrich Rodeck
Gene expression profiles as markers of aggressive disease-EGFR as a factor.
International journal of radiation oncology, biology, physics 2007;69(2 Suppl):S102-5.
2007: Sergio Kaiser; Young-Kyu Park; Jeffrey L Franklin; Richard B Halberg; Ming Yu; Walter J Jessen; Johannes Freudenberg; Xiaodi Chen; Kevin Haigis; anil jegga; Sue Kong; Bhuvaneswari Sakthivel; Huan Xu; Timothy Reichling; Mohammad Azhar; Gregory P Boivin; Reade B Roberts; Anika C Bissahoyo; Fausto Gonzales; Greg C Bloom; Steven Eschrich; Scott L Carter; Jeremy E Aronow; John Kleimeyer; Michael Kleimeyer; Vivek Ramaswamy; Stephen H Settle; Braden Boone; Shawn Levy; Jonathan M Graff; Thomas Doetschman; Joanna Groden; William F Dove; David Threadgill; Timothy J Yeatman; Robert J Coffey; Bruce Aronow
Transcriptional recapitulation and subversion of embryonic colon development by mouse colon tumor models and human colon cancer.
Genome biology 2007;8(7):R131.
2007: Saurabh Joshi; Holly Davies; Lauren Porter Sims; Shawn Levy; Jurrien Dean
Ovarian gene expression in the absence of FIGLA, an oocyte-specific transcription factor.
BMC developmental biology 2007;7():67.
2007: Christine H Chung; Shawn Levy; Pierre Chaurand; David P Carbone
Genomics and proteomics: emerging technologies in clinical cancer research.
Critical reviews in oncology/hematology 2007;61(1):1-25.
2006: Leming Shi; Laura H Reid; Wendell D Jones; Richard Shippy; Janet A Warrington; Shawn C Baker; Patrick J Collins; Francoise de Longueville; Ernest S Kawasaki; Kathleen Y Lee; Yuling Luo; Yongming Andrew Sun; James Willey; Robert A Setterquist; Gavin M Fischer; Weida Tong; Yvonne P Dragan; David J Dix; Felix W Frueh; Frederico M Goodsaid; Damir Herman; Roderick V Jensen; Charles D Johnson; Edward K Lobenhofer; Raj K Puri; Uwe Schrf; Jean Thierry-Mieg; Charles Wang; Mike Wilson; Paul K Wolber; Lu Zhang; Shashi Amur; Wenjun Bao; Catalin C Barbacioru; Anne Bergstrom Lucas; Vincent Bertholet; Cecilie Boysen; Bud Bromley; Donna Brown; Alan Brunner; Roger Canales; Xiaoxi Megan Cao; Thomas Cebula; James J Chen; Jing Cheng; Tzu-Ming Chu; Eugene Chudin; John Corson; J Christopher Corton; Lisa J Croner; Christopher Davies; Timothy S Davison; Glenda Delenstarr; Xutao Deng; David Dorris; Aron C Eklund; Xiao-hui Fan; Hong Fang; Stephanie Fulmer-Smentek; James C Fuscoe; Kathryn Gallagher; Weigong Ge; Lei Guo; Xu Guo; Janet Hager; Paul K Haje; Jing Han; Tao Han; Heather C Harbottle; Stephen C Harris; Eli Hatchwell; Craig A Hauser; Susan Hester; Huixiao Hong; Patrick Hurban; Scott Jackson; Hanlee Ji; Charles R Knight; Winston Kuo; J Eugene LeClerc; Shawn Levy; Quan-Zhen Li; Chunmei Liu; Ying Liu; Michael J Lombardi; Yunqing Ma; Scott R Magnuson; Botoul Maqsodi; Tim McDaniel; Nan Mei; Ola Myklebost; Baitang Ning; Natalia Novoradovskaya; Michael S Orr; Terry W Osborn; Adam Papallo; Patterson Tucker; Roger G Perkins; Elizabeth H Peters; Ron Peterson; Kenneth L Philips; P Scott Pine; Lajos Pusztai; Feng Qian; Hongzu Ren; Mitch Rosen; Barry A Rosenzweig; Raymond R Samaha; Mark Schena; Gary P Schroth; Svetlana Shchegrova; Dave D Smith; Staedtler Frank; Zhenqiang Su; Hongmei Sun; Zoltan Szallasi; Zivana Tezak; Danielle Thierry-Mieg; Karol L Thompson; Irina Tikhonova; Yaron Turpaz; Beena Vallanat; Christophe Van; Stephen J Walker; Sue Jane Wang; Yonghong Wang; Russ Wolfinger; Alex Wong; Jie Wu; Chunlin Xiao; Qian Xie; Jun Xu; Wen Yang; Liang Zhang; Sheng Zhong; Yaping Zong; William Slikker
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements.
Nature biotechnology 2006;24(9):1151-61.
2006: Christine H Chung; Kim Ely; Loris McGavran; Marileila Varella-Garcia; Joel Parker; Natalie Parker; Carolyn Jarrett; Jesse Carter; Barbara A Murphy; James L Netterville; Brian B Burkey; Robert Sinard; Anthony J Cmelak; Shawn Levy; Wendell G Yarbrough; Robbert J C Slebos; Fred R Hirsch
Increased epidermal growth factor receptor gene copy number is associated with poor prognosis in head and neck squamous cell carcinomas.
Journal of clinical oncology : official journal of the American Society of Clinical Oncology 2006;24(25):4170-6.
2006: Christine H Chung; Joel Parker; Kim Ely; Jesse Carter; Yajun Yi; Barbara A Murphy; K. Kian Ang; Adel K El-Naggar; Adam M Zanation; Anthony J Cmelak; Shawn Levy; Robbert J C Slebos; Wendell G Yarbrough
Gene expression profiles identify epithelial-to-mesenchymal transition and activation of nuclear factor-kappaB signaling as characteristics of a high-risk head and neck squamous cell carcinoma.
Cancer research 2006;66(16):8210-8.
2006: Heath Acuff Elrod; Mark Sinnamon; Barbara Fingleton; Braden Boone; Shawn Levy; Xiwu Chen; Ambra Pozzi; David P Carbone; Donald R Schwartz; Kamiar Moin; Bonnie F Sloane; Lynn M Matrisian
Analysis of host- and tumor-derived proteinases using a custom dual species microarray reveals a protective role for stromal matrix metalloproteinase-12 in non-small cell lung cancer.
Cancer research 2006;66(16):7968-75.
2006: Christine H Chung; Shawn Levy; Wendell G Yarbrough
Clinical applications of genomics in head and neck cancer.
Head & neck 2006;28(4):360-8.
2006: Robbert J C Slebos; Yajun Yi; Kim Ely; Jesse Carter; Amy Evjen; Xueqiong Zhang; Yu Shyr; Barbara M Murphy; Anthony J Cmelak; Brian B Burkey; James L Netterville; Shawn Levy; Wendell G Yarbrough; Christine H Chung
Gene expression differences associated with human papillomavirus status in head and neck squamous cell carcinoma.
Clinical cancer research : an official journal of the American Association for Cancer Research 2006;12(3 Pt 1):701-9.
2005: Lu Xie; Baogang J Xu; Agnieszka E Gorska; Yu Shyr; Sarah A Schwartz; Nikki Cheng; Shawn Levy; Brian Bierie; Richard M Caprioli; Harold L Moses
Genomic and proteomic analysis of mammary tumors arising in transgenic mice.
Journal of proteome research 2005;4(6):2088-98.
2005: Alexander Statnikov; Constantin F Aliferis; Ioannis Tsamardinos; Douglas Hardin; Shawn Levy
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Bioinformatics (Oxford, England) 2005;21(5):631-43.
2005: Young-Kyu Park; Jeffrey L Franklin; Stephen H Settle; Shawn Levy; Eunkyung Chung; Loice H Jeyakumar; Yu Shyr; M Kay Washington; Robert H Whitehead; Bruce Aronow; Robert J Coffey
Gene expression profile analysis of mouse colon embryonic development.
Genesis (New York, N.Y. : 2000) 2005;41(1):1-12.
2004: Daniel M Sforza; Jacopo Annese; Dahai Liu; Shawn Levy; Arthur W Toga; Desmond J Smith
Anatomical methods for voxelation of the mammalian brain.
Neurochemical research 2004;29(6):1299-306.
2004: David B Friedman; Salisha Hill; Jeffrey W Keller; Nipun Merchant; Shawn Levy; Robert J Coffey; Richard M Caprioli
Proteome analysis of human colon cancer by two-dimensional difference gel electrophoresis and mass spectrometry.
Proteomics 2004;4(3):793-811.
2004: Mark K McQuain; Kevin Seale; Joel Peek; Timothy S Fisher; Shawn Levy; Mark A Stremler; Frederick R Haselton
Chaotic mixer improves microarray hybridization.
Analytical biochemistry 2004;325(2):215-26.
2004: Jason E Kokoszka; Katrina G Waymire; Shawn Levy; James E Sligh; Jiyang Cai; Dean P Jones; Grant R MacGregor; Douglas C Wallace
The ADP/ATP translocator is not essential for the mitochondrial permeability transition pore.
Nature 2004;427(6973):461-5.
2004: Alick K T Law; Deepak Gupta; Shawn Levy; Douglas C Wallace; Robert J McKeon; Charles R Buck
TGF-beta1 induction of the adenine nucleotide translocator 1 in astrocytes occurs through Smads and Sp1 transcription factors.
BMC neuroscience 2004;5():1.
2003: Shawn Levy
Microarray analysis in drug discovery: an uplifting view of depression.
Science's STKE : signal transduction knowledge environment 2003;2003(206):pe46.
2003: Noboru Yamagata; Yu Shyr; Kiyoshi Yanagisawa; Mary Edgerton; Thao P Dang; Adriana Gonzalez; Sorena Nadaf; Paul Larsen; John R Roberts; Jonathan C Nesbitt; Roy Jensen; Shawn Levy; Jason Moore; John D Minna; David P Carbone
A training-testing approach to the molecular classification of resected non-small cell lung cancer.
Clinical cancer research : an official journal of the American Association for Cancer Research 2003;9(13):4695-704.
2003: Mark K McQuain; Kevin Seale; Joel Peek; Shawn Levy; Frederick R Haselton
Effects of relative humidity and buffer additives on the contact printing of microarrays by quill pins.
Analytical biochemistry 2003;320(2):281-91.
2003: Guangyu Gu; Ariel Deutch; Jeff Franklin; Shawn Levy; Douglas C Wallace; Jing Zhang
Profiling genes related to mitochondrial function in mice treated with N-methyl-4-phenyl-1,2,3,6-tetrahydropyridine.
Biochemical and biophysical research communications 2003;308(1):197-205.
2002: Shawn Levy; James A S Muldowney
Microarray analysis of neointima: flowing toward a clear future.
Arteriosclerosis, thrombosis, and vascular biology 2002;22(12):1946-7.
2000: James E Sligh; Shawn Levy; Katrina G Waymire; Paulette Allard; Dirck L Dillehay; S Nusinowitz; John R Heckenlively; Grant R MacGregor; Douglas C Wallace
Maternal germ-line transmission of mutant mtDNAs from embryonic stem cell-derived chimeric mice.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(26):14461-6.
2000: Shawn Levy; Y S Chen; B H Graham; Douglas C Wallace
Expression and sequence analysis of the mouse adenine nucleotide translocase 1 and 2 genes.
Gene 2000;254(1-2):57-66.
1999: Shawn Levy; Katrina G Waymire; Y L Kim; Grant R MacGregor; Douglas C Wallace
Transfer of chloramphenicol-resistant mitochondrial DNA into the chimeric mouse.
Transgenic research 1999;8(2):137-45.