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Sangsoo Kim

Research Profile

Chemicals & Drugs

Concepts & Ideas

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Gene Expression Profiling

Living Beings

Genes & Molecular Sequences

Occupations

Computational Biology

Physiology

Gene Expression Regulation, Neoplastic

Co-author Network

Publications

TOP 3
Sangsoo Kim
Editor's Introduction to This Issue.
Kyu-Baek Hwang; Sanghun Ju; Beom-Yong Ha; Sangsoo Kim
Partial AUC maximization for essential gene prediction using genetic algorithms.
Jaeyoung Choi; Jongbum Jeon; Kyongyong Jung; Seogchan Kang; Sangsoo Kim; Gir-Won Lee; Kyeongchae Cheong; Yin-Won Lee; Yong-Hwan Lee
CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes.

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All Publications

2013: Sangsoo Kim
Editor's Introduction to This Issue.
Genomics & informatics 2013;11(1):1.
2013: Kyu-Baek Hwang; Sanghun Ju; Beom-Yong Ha; Sangsoo Kim
Partial AUC maximization for essential gene prediction using genetic algorithms.
BMB reports 2013;46(1):41-6.
2013: Jaeyoung Choi; Jongbum Jeon; Kyongyong Jung; Seogchan Kang; Sangsoo Kim; Gir-Won Lee; Kyeongchae Cheong; Yin-Won Lee; Yong-Hwan Lee
CFGP 2.0: a versatile web-based platform for supporting comparative and evolutionary genomics of fungi and Oomycetes.
Nucleic acids research 2013;41(Database issue):D714-9.
2012: Seonggyun Han; Junnam Lee; Sangsoo Kim
Understanding Disease Susceptibility through Population Genomics.
Genomics & informatics 2012;10(4):234-8.
2012: Sangsoo Kim
Editor's Introduction to This Issue.
Genomics & informatics 2012;10(4):213.
2012: Ji-Sun Kwon; Dougu Nam; Jihye Kim; Sangsoo Kim
Performance Comparison of Two Gene Set Analysis Methods for Genome-wide Association Study Results: GSA-SNP vs i-GSEA4GWAS.
Genomics & informatics 2012;10(2):123-7.
2012: Ji Young Lee; Sangsoo Kim
CysQ of Cryptosporidium parvum, a Protozoa, May Have Been Acquired from Bacteria by Horizontal Gene Transfer.
Genomics & informatics 2012;10(1):9-15.
2012: Sung Hee Park; Sangsoo Kim
Pattern discovery of multivariate phenotypes by association rule mining and its scheme for genome-wide association studies.
International journal of data mining and bioinformatics 2012;6(5):505-20.
2011: Sung Hee Park; Ji Young Lee; Sangsoo Kim
A methodology for multivariate phenotype-based genome-wide association studies to mine pleiotropic genes.
BMC systems biology 2011;5 Suppl 2():S13.
2010: Jason B Carmel; Sangsoo Kim; Marcel Brus-Ramer; John H Martin
Feed-forward control of preshaping in the rat is mediated by the corticospinal tract.
The European journal of neuroscience 2010;32(10):1678-85.
2010: Dougu Nam; Jin Kim; Seon-Young Kim; Sangsoo Kim
GSA-SNP: a general approach for gene set analysis of polymorphisms.
Nucleic acids research 2010;38(Web Server issue):W749-54.
2010: W K Chung; Z L Zheng; J Y Sung; Sangsoo Kim; H H Lee; Soo Jin Choi; Jaeseok Yang
Validity of interferon-γ-release assays for the diagnosis of latent tuberculosis in haemodialysis patients.
Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases 2010;16(7):960-5.
2010: Kyung-Won Hong; Hyun-Seok Jin; Ji-Eun Lim; Sangsoo Kim; Min Jin Go; Bermseok Oh
Recapitulation of two genomewide association studies on blood pressure and essential hypertension in the Korean population.
Journal of human genetics 2010;55(6):336-41.
2010: Kyoungtae Kim; Byung Uk Lee; Gi Byung Hwang; Jun Hyun Lee; Sangsoo Kim
Drop-on-demand patterning of bacterial cells using pulsed jet electrospraying.
Analytical chemistry 2010;82(5):2109-12.
2010: Jiwoong Kim; Yongju Ahn; Kichan Lee; Sung Hee Park; Sangsoo Kim
A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis.
BMC bioinformatics 2010;11():434.
2010: Edon Sung; Sangsoo Kim; Whanchul Shin
Binary image representation of a ligand binding site: its application to efficient sampling of a conformational ensemble.
BMC bioinformatics 2010;11():256.
2009: Sung-Min Ahn; Tae-Hyung Kim; Sunghoon Lee; Deokhoon Kim; Hoyoung Ghang; Dae-Soo Kim; Byoung-Chul Kim; Sang-Yoon Kim; Woo-Yeon Kim; Chulhong Kim; Daeui Park; Yong Seok Lee; Sangsoo Kim; Rohit Reja; Sungwoong Jho; Chang Geun Kim; Ji-Young Cha; Kyung-Hee Kim; Bonghee Lee; Jong Bhak; Seong-Jin Kim
The first Korean genome sequence and analysis: full genome sequencing for a socio-ethnic group.
Genome research 2009;19(9):1622-9.
2009: Young-Joon Ko; Yeong Man Yu; Gyu-Bum Kim; Gir-Won Lee; Pil Jae Maeng; Sangsoo Kim; Anna Floyd; Joseph Heitman; Yong-Sun Bahn
Remodeling of global transcription patterns of Cryptococcus neoformans genes mediated by the stress-activated HOG signaling pathways.
Eukaryotic cell 2009;8(8):1197-217.
2009: Ji Yong Jung; Cheolju Lee; H Ro; hyesoo kim; Kwon Wook Joo; Yongbaek Kim; Curie Ahn; Jin Suk Han; Sangsoo Kim; Kook-Hwan Oh
Sequential occurrence of life-threatening hypokalemia and rebound hyperkalemia associated with barbiturate coma therapy.
Clinical nephrology 2009;71(3):333-7.
2009: Donghee Kim; Seung Hyup Kim; Eun-Jin Park; Chang-Yuil Kang; Sang-Heon Cho; Sangsoo Kim
Anti-allergic effects of PG102, a water-soluble extract prepared from Actinidia arguta, in a murine ovalbumin-induced asthma model.
Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 2009;39(2):280-9.
2009: Sung Hee Park; José A Reyes; David R Gilbert; Ji Woong Kim; Sangsoo Kim
Prediction of protein-protein interaction types using association rule based classification.
BMC bioinformatics 2009;10():36.
2008: Gir Won Lee; Sangsoo Kim
Genome data mining for everyone.
BMB reports 2008;41(11):757-64.
2008: Jungbum Choo; Jae Hee Jung; Woojin Kim; Hyuncheol Oh; Jinho Kim; Hakjoon Kim; Yong Jin Kim; Sangsoo Kim
Oxidation characteristics of airborne carbon nanoparticles by NO(2).
The Science of the total environment 2008;405(1-3):396-401.
2008: Rui-Hong Wang; Kundan Sengupta; Cuiling Li; Hyun-Seok Kim; Liu Cao; Cuiying Xiao; Sangsoo Kim; Xiaoling Xu; Yin Zheng; Beverly Chilton; Rong Jia; Zhi-Ming Zheng; Ettore Appella; Xin Wei Wang; Thomas Ried; Chu-Xia Deng
Impaired DNA damage response, genome instability, and tumorigenesis in SIRT1 mutant mice.
Cancer cell 2008;14(4):312-23.
2008: Joon Seol Bae; Hyun Sub Cheong; Ji-On Kim; Soo Ok Lee; Eun Mi Kim; Hye Won Lee; Sangsoo Kim; Ji-woong Kim; Tailin Cui; Ituro Inoue; Hyoung Doo Shin
Identification of SNP markers for common CNV regions and association analysis of risk of subarachnoid aneurysmal hemorrhage in Japanese population.
Biochemical and biophysical research communications 2008;373(4):593-6.
2008: Jongkeun Choi; Jae Kyung Chon; Sangsoo Kim; Whanchul Shin
Conformational flexibility in mammalian 15S-lipoxygenase: Reinterpretation of the crystallographic data.
Proteins 2008;70(3):1023-32.
2007: Sungsoo Kang; Sung-Jin Yang; Sangsoo Kim; Jong Bhak
CONSORF: a consensus prediction system for prokaryotic coding sequences.
Bioinformatics (Oxford, England) 2007;23(22):3088-90.
2007: Seon-Young Kim; Jeong-Hwan Kim; Heun-Sik Lee; Seung-Moo Noh; Kyu-Sang Song; June-Sik Cho; Hyun Yong Jeong; Woo Ho Kim; Young Il Yeom; Nam-Soon Kim; Sangsoo Kim; Hyang-Sook Yoo; Yong Sung Kim
Meta- and gene set analysis of stomach cancer gene expression data.
Molecules and cells 2007;24(2):200-9.
2007: Jin Ok Yang; Park Charny; Byungwook Lee; Sangsoo Kim; Jong Bhak; hyun goo woo
GS2PATH: a web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data.
Bioinformation 2007;2(5):194-6.
2007: Jung Kyoon Choi; Sang Cheol Kim; Jungmin Seo; Sangsoo Kim; Jong Bhak
Impact of transcriptional properties on essentiality and evolutionary rate.
Genetics 2007;175(1):199-206.
2006: Sun Young Yoon; Jeong-Min Kim; Jung-Hwa Oh; Yeo-Jin Jeon; Dong-Seok Lee; Joo Heon Kim; Jong Young Choi; Byung Min Ahn; Sangsoo Kim; Hyang-Sook Yoo; Yong Sung Kim; Nam-Soon Kim
Gene expression profiling of human HBV- and/or HCV-associated hepatocellular carcinoma cells using expressed sequence tags.
International journal of oncology 2006;29(2):315-27.
2006: Sunghoon Lee; Byungwook Lee; Insoo Jang; Sangsoo Kim; Jong Bhak
Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information.
Nucleic acids research 2006;34(Web Server issue):W99-103.
2006: Liu Cao; Sangsoo Kim; Cuiying Xiao; Rui-Hong Wang; Xavier COUMOUL; Xiaoyan Wang; Wen Mei Li; Xiao Ling Xu; Joseph A De Soto; Hiroyuki Takai; Sabine Mai; Stephen J Elledge; Noboru Motoyama; Chu-Xia Deng
ATM-Chk2-p53 activation prevents tumorigenesis at an expense of organ homeostasis upon Brca1 deficiency.
The EMBO journal 2006;25(10):2167-77.
2006: Jung Cho-Rok; Jinsang Yoo; Ye Jin Jang; Sangsoo Kim; In-Sun Chu; Young Il Yeom; Jong Young Choi; Dong-Soo Im
Adenovirus-mediated transfer of siRNA against PTTG1 inhibits liver cancer cell growth in vitro and in vivo.
Hepatology (Baltimore, Md.) 2006;43(5):1042-52.
2005: Jung Kyoon Choi; Ungsik Yu; Ook Joon Yoo; Sangsoo Kim
Differential coexpression analysis using microarray data and its application to human cancer.
Bioinformatics (Oxford, England) 2005;21(24):4348-55.
2005: Jung-Hwa Oh; Jin Ok Yang; Yoonsoo Hahn; Mi-Rang Kim; Sang-Soon Byun; Yeo-Jin Jeon; Jeong-Min Kim; Kyu-Sang Song; Seung-Moo Noh; Sangsoo Kim; Hyang-Sook Yoo; Yong Sung Kim; Nam-Soon Kim
Transcriptome analysis of human gastric cancer.
Mammalian genome : official journal of the International Mammalian Genome Society 2005;16(12):942-54.
2005: Hyung-Sik Kang; Eun-Mi Kim; Sanggyu Lee; Suk Ran Yoon; Toshihiko Kawamura; Young-Cheol Lee; Sangsoo Kim; Pyung Keun Myung; San Ming Wang; Inpyo Choi
Stage-dependent gene expression profiles during natural killer cell development.
Genomics 2005;86(5):551-65.
2005: Ungsik Yu; Yoon Jeong Choi; Jung Kyoon Choi; Sangsoo Kim
TO-GO: a Java-based Gene Ontology navigation environment.
Bioinformatics (Oxford, England) 2005;21(17):3580-1.
2005: Tae-Wook Kang; Eun-Hye Lee; Moo-Sang Kim; Sang-Gi Paik; Sangsoo Kim; Chang-Bae Kim
Molecular phylogeny and geography of Korean medaka fish (Oryzias latipes).
Molecules and cells 2005;20(1):151-6.
2005: Sungsam Gong; Giseok Yoon; Insoo Jang; Dan Bolser; Panos Dafas; Michael Schroeder; Hansol Choi; Yoobok Cho; Kyungsook Han; Sunghoon Lee; Hwanho Choi; Michael Lappe; Liisa Holm; Sangsoo Kim; Donghoon Oh; Jong Bhak
PSIbase: a database of Protein Structural Interactome map (PSIMAP).
Bioinformatics (Oxford, England) 2005;21(10):2541-3.
2005: Jinsoo Kim; Jungmin Seo; Young Seek Lee; Sangsoo Kim
TFExplorer: integrated analysis database for predicted transcription regulatory elements.
Bioinformatics (Oxford, England) 2005;21(4):548-50.
2005: Young Joo Kim; Hyun Gyu Park; Young Lyul Yang; Yoosik Yoon; Sangsoo Kim; Eugene Oh
Multifunctional drug delivery system using starch-alginate beads for controlled release.
Biological & pharmaceutical bulletin 2005;28(2):394-7.
2005: Hyojin Kang; Kyoung Oak Choi; Byung-Dong Kim; Sangsoo Kim; Young Joo Kim
FESD: a Functional Element SNPs Database in human.
Nucleic acids research 2005;33(Database issue):D518-22.
2004: Bu-Yeo Kim; Je-Geun Lee; Sunhoo Park; Jae-Yeon Ahn; Yeun-Jin Ju; Jin-Haeng Chung; Chul Ju Han; Sook-Hyang Jeong; Young Il Yeom; Sangsoo Kim; Yong-Sung Lee; Chang-Min Kim; Eun-Mi Eom; Dong-Hee Lee; Kang-Yell Choi; Myung-Haing Cho; Kyung-Suk Suh; Dong-Wook Choi; Kee-Ho Lee
Feature genes of hepatitis B virus-positive hepatocellular carcinoma, established by its molecular discrimination approach using prediction analysis of microarray.
Biochimica et biophysica acta 2004;1739(1):50-61.
2004: James M A Turner; Olga Aprelikova; Xiaoling Xu; Ruihong Wang; Sangsoo Kim; Gadisetti V R Chandramouli; J Carl Barrett; Paul S Burgoyne; Chu-Xia Deng
BRCA1, histone H2AX phosphorylation, and male meiotic sex chromosome inactivation.
Current biology : CB 2004;14(23):2135-42.
2004: Nam-Soon Kim; Yoonsoo Hahn; Jung-Hwa Oh; Ju-Yeon Lee; Kyung-Jin Oh; Jeong-Min Kim; Hong-Seog Park; Sangsoo Kim; Kyu-Sang Song; Seung-Moo Rho; Hyang-Sook Yoo; Yong Sung Kim
Gene cataloging and expression profiling in human gastric cancer cells by expressed sequence tags.
Genomics 2004;83(6):1024-45.
2004: Jung Kyoon Choi; Jong Young Choi; Dae-Ghon Kim; Dong Wook Choi; Bu-Yeo Kim; Kee-Ho Lee; Young Il Yeom; Hyang Sook Yoo; Ook Joon Yoo; Sangsoo Kim
Integrative analysis of multiple gene expression profiles applied to liver cancer study.
FEBS letters 2004;565(1-3):93-100.
2004: Ungsik Yu; Sung Hoon Lee; Young Joo Kim; Sangsoo Kim
Bioinformatics in the post-genome era.
Journal of biochemistry and molecular biology 2004;37(1):75-82.
2003: Liu Cao; Wenmei Li; Sangsoo Kim; Steven G Brodie; Chu-Xia Deng
Senescence, aging, and malignant transformation mediated by p53 in mice lacking the Brca1 full-length isoform.
Genes & development 2003;17(2):201-13.
2003: Jung Kyoon Choi; Ungsik Yu; Sangsoo Kim; Ook Joon Yoo
Combining multiple microarray studies and modeling interstudy variation.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i84-90.
2001: Soyeong Sim; Sangsoo Kim; Younghoon Lee
Role of the sequence of the rne-dependent site in 3' processing of M1 RNA, the catalytic component of Escherichia coli RNase P.
FEBS letters 2001;505(2):291-5.
1999: Sangsoo Kim; Soyeong Sim; Younghoon Lee
In vitro analysis of processing at the 3'-end of precursors of M1 RNA, the catalytic subunit of Escherichia coli RNase P: multiple pathways and steps for the processing.
Nucleic acids research 1999;27(3):895-902.
1998: M S Kim; BH Park; Sangsoo Kim; Y J Lee; Jae Hoon Chung; Younghoon Lee
Complementation of the growth defect of an rnpA49 mutant of Escherichia coli by overexpression of arginine tRNA(CCG).
Biochemistry and molecular biology international 1998;46(6):1153-60.
1998: BH Park; Y N Choi; Jeong Won Park; Soyeong Sim; M C Gil; Sangsoo Kim; M Kim; Younghoon Lee
Expression of C5 protein, the protein component of Escherichia coli RNase P, from the tac promoter.
Molecules and cells 1998;8(1):96-100.
1997: Sangsoo Kim; Younghoon Lee
Function of the repeated sequence in the 3' flanking region of the Escherichia coli rnpB gene on transcription termination and RNA processing.
FEBS letters 1997;407(3):353-6.
1997: M S Kim; Sangsoo Kim; S C Kim; Y M Lee; E S Jeon; C U Park; Younghoon Lee
The Brevibacterium albidum gene encoding the arginine tRNACCG complements the growth defect of an Escherichia coli strain carrying a thermosensitive mutation in the rnpA gene at the nonpermissive temperature.
Molecular & general genetics : MGG 1997;254(4):464-8.
1997: Sangsoo Kim; Younghoon Lee
Deletion analysis of the Escherichia coli rnpB terminators.
Molecules and cells 1997;7(1):110-4.
1996: Sangsoo Kim; Ho Kim; I Park; Younghoon Lee
Mutational analysis of RNA structures and sequences postulated to affect 3' processing of M1 RNA, the RNA component of Escherichia coli RNase P.
The Journal of biological chemistry 1996;271(32):19330-7.