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shabaz mohammed

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Marco L Hennrich; Geert J P L Kops; Fabio Marino; shabaz mohammed; Vincent Groenewold; Albert J R Heck
Universal Quantitative Kinase Assay Based on Diagonal SCX Chromatography and Stable Isotope Dimethyl Labeling Provides High-definition Kinase Consensus Motifs for PKA and Human Mps1.
Hongtao Zhang; Houjiang Zhou; Lidija Berke; Albert J R Heck; shabaz mohammed; Ben Scheres; Frank L H Menke
Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth.
Lars A T Meijer; shabaz mohammed; Houjiang Zhou; Marco L Hennrich; A F Maarten Altelaar; Johannes L Bos; On Ying A Chan; Albert J R Heck
Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway.

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2013: Marco L Hennrich; Geert J P L Kops; Fabio Marino; shabaz mohammed; Vincent Groenewold; Albert J R Heck
Universal Quantitative Kinase Assay Based on Diagonal SCX Chromatography and Stable Isotope Dimethyl Labeling Provides High-definition Kinase Consensus Motifs for PKA and Human Mps1.
Journal of proteome research 2013;12(5):2214-24.
2013: Hongtao Zhang; Houjiang Zhou; Lidija Berke; Albert J R Heck; shabaz mohammed; Ben Scheres; Frank L H Menke
Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth.
Molecular & cellular proteomics : MCP 2013;12(5):1158-69.
2013: Lars A T Meijer; shabaz mohammed; Houjiang Zhou; Marco L Hennrich; A F Maarten Altelaar; Johannes L Bos; On Ying A Chan; Albert J R Heck
Quantitative global phosphoproteomics of human umbilical vein endothelial cells after activation of the Rap signaling pathway.
Molecular bioSystems 2013;9(4):732-49.
2013: Houjiang Zhou; Hanfa Zou; Mingliang Ye; Eleonora Corradini; Alba Cristobal; Jing Dong; Albert J R Heck; shabaz mohammed
Robust phosphoproteome enrichment using monodisperse microsphere-based immobilized titanium (IV) ion affinity chromatography.
Nature protocols 2013;8(3):461-80.
2013: Christian K Frese; Albert J R Heck; Karl Mechtler; Thomas Taus; Houjiang Zhou; A F Maarten Altelaar; shabaz mohammed
Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD).
Journal of proteome research 2013;12(3):1520-5.
2013: Houjiang Zhou; Serena Di Palma; Albert J R Heck; Mao Peng; Ayse Nur Polat; Christian Preisinger; shabaz mohammed
Toward a comprehensive characterization of a human cancer cell phosphoproteome.
Journal of proteome research 2013;12(1):260-71.
2013: Vincentius A Halim; Albert J R Heck; Monica Alvarez-Fernandez; Melinda Aprelia; shabaz mohammed; Henk W P van den Toorn; Yan Juan Xu; René H Medema
Comparative phosphoproteomic analysis of checkpoint recovery identifies new regulators of the DNA damage response.
Science signaling 2013;6(272):rs9.
2012: Christian K Frese; Jens Griep-Raming; Albert J R Heck; Dirk Nolting; Henk van den Toorn; A F Maarten Altelaar; shabaz mohammed
Toward full peptide sequence coverage by dual fragmentation combining electron-transfer and higher-energy collision dissociation tandem mass spectrometry.
Analytical chemistry 2012;84(22):9668-73.
2012: Serena Di Palma; shabaz mohammed; Albert J R Heck
ZIC-cHILIC as a fractionation method for sensitive and powerful shotgun proteomics.
Nature protocols 2012;7(11):2041-55.
2012: Ayse Nur Polat; Reinout Raijmakers; Albert J R Heck; Karsten Kraiczek; shabaz mohammed
Fully automated isotopic dimethyl labeling and phosphopeptide enrichment using a microfluidic HPLC phosphochip.
Analytical and bioanalytical chemistry 2012;404(8):2507-12.
2012: Duangnapa Kovanich; shabaz mohammed; Reinout Raijmakers; Arjen Scholten; Salvatore Cappadona; Albert J R Heck
Applications of stable isotope dimethyl labeling in quantitative proteomics.
Analytical and bioanalytical chemistry 2012;404(4):991-1009.
2012: Bon-Kyoung Koo; Teck Y Low; Madelon M Maurice; shabaz mohammed; Maureen Spit; Daniel E Stange; Marc van de Wetering; Johan H van Es; Albert J R Heck; Ingrid Jordens; Hans Clevers
Tumour suppressor RNF43 is a stem-cell E3 ligase that induces endocytosis of Wnt receptors.
Nature 2012;488(7413):665-9.
2012: Alba Cristobal; Piero Giansanti; Soenita S Goerdayal; Albert J R Heck; Marco L Hennrich; shabaz mohammed
In-house construction of a UHPLC system enabling the identification of over 4000 protein groups in a single analysis.
The Analyst 2012;137(15):3541-8.
2012: Javier Muñoz; Kevin Myant; Sorina Radulescu; Owen J Sansom; Arnout G Schepers; Daniel E Stange; Marc van de Wetering; Johan H van Es; Alexander van Oudenaarden; Rogier Versteeg; Richard Volckmann; Albert J R Heck; Shalev Itzkovitz; Bon-Kyoung Koo; Jan Koster; Kevin S Kung; shabaz mohammed; Nick Barker; Hans Clevers
The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers.
The EMBO journal 2012;31(14):3079-91.
2012: Serena Di Palma; Albert J R Heck; Marco L Hennrich; shabaz mohammed
Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis.
Journal of proteomics 2012;75(13):3791-813.
2012: Vivian S W Li; Teck Y Low; Tokameh Mahmoudi; Madelon M Maurice; shabaz mohammed; Ser Sue Ng; Paul J Boersema; Jan P Gerlach; Albert J R Heck; Wouter R Karthaus; Hans Clevers
Wnt signaling through inhibition of β-catenin degradation in an intact Axin1 complex.
Cell 2012;149(6):1245-56.
2012: Flore Kruiswijk; Ratna Lim; Teck Yew Low; Roberto Magliozzi; shabaz mohammed; Michele Pagano; Christopher G Proud; Laurensia Yuniati; Renske Bolder; Albert J R Heck; Daniele Guardavaccaro
Coupled activation and degradation of eEF2K regulates protein synthesis in response to genotoxic stress.
Science signaling 2012;5(227):ra40.
2012: Mao Peng; Arjen Scholten; Nadia Taouatas; Bas van Breukelen; Salvatore Cappadona; shabaz mohammed; Albert J R Heck
Protease bias in absolute protein quantitation.
Nature methods 2012;9(6):524-5.
2012: Marco L Hennrich; Vincent Groenewold; Albert J R Heck; Henk W P van den Toorn; shabaz mohammed
Ultra acidic strong cation exchange enabling the efficient enrichment of basic phosphopeptides.
Analytical chemistry 2012;84(4):1804-8.
2012: Vera van Noort; Ivana Vonkova; Eva Yus; Samuel Bader; Matthew J Betts; Peer Bork; Albert J R Heck; Sebastian Kühner; Runjun Kumar; Tobias Maier; shabaz mohammed; Martina O'Flaherty; Robert B Russell; Vladimir Rybin; Arne Schmeisky; Jan Seebacher; Luis Serrano; Jörg Stülke; Anne-Claude Gavin
Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.
Molecular systems biology 2012;8():571.
2011: Serena Di Palma; Albert J R Heck; Reinout Raijmakers; shabaz mohammed
Evaluation of the deuterium isotope effect in zwitterionic hydrophilic interaction liquid chromatography separations for implementation in a quantitative proteomic approach.
Analytical chemistry 2011;83(21):8352-6.
2011: Houjiang Zhou; Hanfa Zou; Marco L Hennrich; Teck Y Low; shabaz mohammed; Thomas Schwend; Henk van der Toorn; Albert J R Heck
Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti (IV) based IMAC enrichment.
Molecular & cellular proteomics : MCP 2011;10(10):M110.006452.
2011: Arjen Scholten; Toon A B van Veen; Sara Zanivan; Bernard Delanghe; Teck Y Low; shabaz mohammed; Albert J R Heck
In-depth quantitative cardiac proteomics combining electron transfer dissociation and the metalloendopeptidase Lys-N with the SILAC mouse.
Molecular & cellular proteomics : MCP 2011;10(10):O111.008474.
2011: Monica Alvarez-Fernandez; Melinda Aprelia; Vincentius A Halim; shabaz mohammed; Jamila Laoukili; René H Medema
Protein phosphatase 2A (B55α) prevents premature activation of forkhead transcription factor FoxM1 by antagonizing cyclin A/cyclin-dependent kinase-mediated phosphorylation.
The Journal of biological chemistry 2011;286(38):33029-36.
2011: Marco L Hennrich; Geert J P L Kops; Vincent Groenewold; Albert J R Heck; shabaz mohammed
Improving depth in phosphoproteomics by using a strong cation exchange-weak anion exchange-reversed phase multidimensional separation approach.
Analytical chemistry 2011;83(18):7137-43.
2011: Salvatore Cappadona; Teck Y Low; shabaz mohammed; Javier Muñoz; Wim P E Spee; Bas van Breukelen; Albert J R Heck
Deconvolution of overlapping isotopic clusters improves quantification of stable isotope-labeled peptides.
Journal of proteomics 2011;74(10):2204-9.
2011: Erik L de Graaf; shabaz mohammed; Bas van Breukelen; A F Maarten Altelaar; Albert J R Heck
Improving SRM assay development: a global comparison between triple quadrupole, ion trap, and higher energy CID peptide fragmentation spectra.
Journal of proteome research 2011;10(9):4334-41.
2011: Wim de Lau; Daniele Guardavaccaro; Andrea Haegebarth; Albert J R Heck; Bon-Kyoung Koo; Pekka Kujala; Vivian S W Li; Teck Y Low; shabaz mohammed; Yasuaki Mohri; Katsuhiko Nishimori; Peter J Peters; Richard B M Schasfoort; Daniel E Stange; Hans Teunissen; Marc van de Wetering; Johan E van Es; Nick Barker; Hans Clevers
Lgr5 homologues associate with Wnt receptors and mediate R-spondin signalling.
Nature 2011;476(7360):293-7.
2011: Serena Di Palma; Albert J R Heck; Daniel Stange; Marc van de Wetering; Hans Clevers; shabaz mohammed
Highly sensitive proteome analysis of FACS-sorted adult colon stem cells.
Journal of proteome research 2011;10(8):3814-9.
2011: Christian K Frese; A F Maarten Altelaar; Marco L Hennrich; Dirk Nolting; Martin Zeller; Jens Griep-Raming; Albert J R Heck; shabaz mohammed
Improved peptide identification by targeted fragmentation using CID, HCD and ETD on an LTQ-Orbitrap Velos.
Journal of proteome research 2011;10(5):2377-88.
2011: Serena Di Palma; Paul J Boersema; Albert J R Heck; shabaz mohammed
Zwitterionic hydrophilic interaction liquid chromatography (ZIC-HILIC and ZIC-cHILIC) provide high resolution separation and increase sensitivity in proteome analysis.
Analytical chemistry 2011;83(9):3440-7.
2011: Henk W P van den Toorn; Javier Muñoz; shabaz mohammed; Reinout Raijmakers; Albert J R Heck; Bas van Breukelen
RockerBox: analysis and filtering of massive proteomics search results.
Journal of proteome research 2011;10(3):1420-4.
2011: shabaz mohammed; Albert Heck
Strong cation exchange (SCX) based analytical methods for the targeted analysis of protein post-translational modifications.
Current opinion in biotechnology 2011;22(1):9-16.
2011: Nadia Taouatas; shabaz mohammed; Albert J R Heck
Exploring new proteome space: combining Lys-N proteolytic digestion and strong cation exchange (SCX) separation in peptide-centric MS-driven proteomics.
Methods in molecular biology (Clifton, N.J.) 2011;753():157-67.
2010: Reinout Raijmakers; Pieter Neerincx; shabaz mohammed; Albert J R Heck
Cleavage specificities of the brother and sister proteases Lys-C and Lys-N.
Chemical communications (Cambridge, England) 2010;46(46):8827-9.
2010: Marco L Hennrich; shabaz mohammed; A F Maarten Altelaar; Albert J R Heck
Dimethyl isotope labeling assisted de novo peptide sequencing.
Journal of the American Society for Mass Spectrometry 2010;21(12):1957-65.
2010: Sangtae Kim; Nikolai Mischerikow; Nuno Bandeira; J Daniel Navarro; Louis Wich; shabaz mohammed; Albert J R Heck; Pavel A Pevzner
The generating function of CID, ETD, and CID/ETD pairs of tandem mass spectra: applications to database search.
Molecular & cellular proteomics : MCP 2010;9(12):2840-52.
2010: Nikolai Mischerikow; A F Maarten Altelaar; J Daniel Navarro; shabaz mohammed; Albert J R Heck
Comparative assessment of site assignments in CID and electron transfer dissociation spectra of phosphopeptides discloses limited relocation of phosphate groups.
Molecular & cellular proteomics : MCP 2010;9(10):2140-8.
2010: Nadia Taouatas; Albert J R Heck; shabaz mohammed
Evaluation of metalloendopeptidase Lys-N protease performance under different sample handling conditions.
Journal of proteome research 2010;9(8):4282-8.
2010: Andrew J Alpert; Konstantinos Petritis; Lars Kangas; Richard D Smith; Karl Mechtler; Goran Mitulović; shabaz mohammed; Albert J R Heck
Peptide orientation affects selectivity in ion-exchange chromatography.
Analytical chemistry 2010;82(12):5253-9.
2010: Monica Alvarez-Fernandez; Vincentius A Halim; Lenno Krenning; Melinda Aprelia; shabaz mohammed; Albert J Heck; René H Medema
Recovery from a DNA-damage-induced G2 arrest requires Cdk-dependent activation of FoxM1.
EMBO reports 2010;11(6):452-8.
2010: Andreas O Helbig; Sharon Gauci; Reinout Raijmakers; Bas van Breukelen; Monique Slijper; shabaz mohammed; Albert J R Heck
Profiling of N-acetylated protein termini provides in-depth insights into the N-terminal nature of the proteome.
Molecular & cellular proteomics : MCP 2010;9(5):928-39.
2010: Bas van Breukelen; Alexandros Georgiou; Madalina M Drugan; Nadia Taouatas; shabaz mohammed; Albert J R Heck
LysNDeNovo: an algorithm enabling de novo sequencing of Lys-N generated peptides fragmented by electron transfer dissociation.
Proteomics 2010;10(6):1196-201.
2010: Ser Sue Ng; Tokameh Mahmoudi; Vivian S W Li; Pantelis Hatzis; Paul J Boersema; shabaz mohammed; Albert J Heck; Hans Clevers
MAP3K1 functionally interacts with Axin1 in the canonical Wnt signalling pathway.
Biological chemistry 2010;391(2-3):171-80.
2010: Reinout Raijmakers; Karsten Kraiczek; Ad P de Jong; shabaz mohammed; Albert J R Heck
Exploring the human leukocyte phosphoproteome using a microfluidic reversed-phase-TiO2-reversed-phase high-performance liquid chromatography phosphochip coupled to a quadrupole time-of-flight mass spectrometer.
Analytical chemistry 2010;82(3):824-32.
2010: Waraporn Tanthanuch; Panlada Tittabutr; shabaz mohammed; Rune Matthiesen; Montarop Yamabhai; Monchai Manassila; Ole Noerregaard Jensen; Nantakorn Boonkerd; Neung Teaumroong
Identification of salt-tolerant Sinorhizobium sp. strain BL3 membrane proteins based on proteomics.
Microbes and environments / JSME 2010;25(4):275-80.
2010: Andreas O Helbig; Sara Rosati; Pim W W M Pijnappel; Bas van Breukelen; Marc H T H Timmers; shabaz mohammed; Monique Slijper; Albert J R Heck
Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels.
BMC genomics 2010;11():685.
2010: Tokameh Mahmoudi; Sylvia F Boj; Pantelis Hatzis; Vivian S W Li; Nadia Taouatas; Robert G J Vries; Hans Teunissen; Harry Begthel; Jeroen Korving; shabaz mohammed; Albert J R Heck; Hans Clevers
The leukemia-associated Mllt10/Af10-Dot1l are Tcf4/β-catenin coactivators essential for intestinal homeostasis.
PLoS biology 2010;8(11):e1000539.
2010: Sandra Schubert; Klaus-Peter Knoch; Joke Ouwendijk; shabaz mohammed; Yury Bodrov; Melanie Jäger; Anke Altkrüger; Carolin Wegbrod; Marvin Adams; Yong Kim; Stanley C Froehner; Ole N Jensen; Yannis Kalaidzidis; Michele Solimena
β2-Syntrophin is a Cdk5 substrate that restrains the motility of insulin secretory granules.
PloS one 2010;5(9):e12929.
2010: Nga-Chi Lau; Klaas Willem Mulder; Arjan B Brenkman; shabaz mohammed; Niels J F van den Broek; Albert J R Heck; H Th Marc Timmers
Phosphorylation of Not4p functions parallel to BUR2 to regulate resistance to cellular stresses in Saccharomyces cerevisiae.
PloS one 2010;5(4):e9864.
2009: Tokameh Mahmoudi; Vivian S W Li; Ser Sue Ng; Nadia Taouatas; Robert G J Vries; shabaz mohammed; Albert J Heck; Hans Clevers
The kinase TNIK is an essential activator of Wnt target genes.
The EMBO journal 2009;28(21):3329-40.
2009: Andreas O Helbig; Marco J L de Groot; Renske A van Gestel; shabaz mohammed; Erik A F De Hulster; Marijke A H Luttik; Pascale Daran-Lapujade; Jack T. Pronk; Albert J R Heck; Monique Slijper
A three-way proteomics strategy allows differential analysis of yeast mitochondrial membrane protein complexes under anaerobic and aerobic conditions.
Proteomics 2009;9(20):4787-98.
2009: Marco L Hennrich; Paul J Boersema; Henk van den Toorn; Nikolai Mischerikow; Albert J R Heck; shabaz mohammed
Effect of chemical modifications on peptide fragmentation behavior upon electron transfer induced dissociation.
Analytical chemistry 2009;81(18):7814-22.
2009: Reinout Raijmakers; Albert J R Heck; shabaz mohammed
Assessing biological variation and protein processing in primary human leukocytes by automated multiplex stable isotope labeling coupled to 2 dimensional peptide separation.
Molecular bioSystems 2009;5(9):992-1003.
2009: Paul J Boersema; shabaz mohammed; Albert J R Heck
Phosphopeptide fragmentation and analysis by mass spectrometry.
Journal of mass spectrometry : JMS 2009;44(6):861-78.
2009: Sharon Gauci; Andreas O Helbig; Monique Slijper; Jeroen Krijgsveld; Albert J R Heck; shabaz mohammed
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach.
Analytical chemistry 2009;81(11):4493-501.
2009: Thin Thin Aye; shabaz mohammed; Henk W P van den Toorn; Toon A B van Veen; Michiel van der Heyden; Arjen Scholten; Albert J R Heck
Selectivity in enrichment of cAMP-dependent protein kinase regulatory subunits type I and type II and their interactors using modified cAMP affinity resins.
Molecular & cellular proteomics : MCP 2009;8(5):1016-28.
2009: Paul J Boersema; Nadia Taouatas; A F Maarten Altelaar; Joost W Gouw; Philip L Ross; Darryl J Pappin; Albert J R Heck; shabaz mohammed
Straightforward and de novo peptide sequencing by MALDI-MS/MS using a Lys-N metalloendopeptidase.
Molecular & cellular proteomics : MCP 2009;8(4):650-60.
2009: A F Maarten Altelaar; shabaz mohammed; Maike A D Brans; Roger A H Adan; Albert J R Heck
Improved identification of endogenous peptides from murine nervous tissue by multiplexed peptide extraction methods and multiplexed mass spectrometric analysis.
Journal of proteome research 2009;8(2):870-6.
2009: Paul J Boersema; Reinout Raijmakers; Simone Lemeer; shabaz mohammed; Albert J R Heck
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics.
Nature protocols 2009;4(4):484-94.
2009: Nadia Taouatas; A F Maarten Altelaar; Madalina M Drugan; Andreas O Helbig; shabaz mohammed; Albert J R Heck
Strong cation exchange-based fractionation of Lys-N-generated peptides facilitates the targeted analysis of post-translational modifications.
Molecular & cellular proteomics : MCP 2009;8(1):190-200.
2008: Raul Rojas; Thijs van Vlijmen; Gonzalo Mardones; Yogikala Prabhu; Adriana Rojas; shabaz mohammed; Albert J R Heck; Graça Raposo; Peter van der Sluijs; Juan Bonifacino
Regulation of retromer recruitment to endosomes by sequential action of Rab5 and Rab7.
The Journal of cell biology 2008;183(3):513-26.
2008: Paul J Boersema; Thin Thin Aye; Toon A B van Veen; Albert J R Heck; shabaz mohammed
Triplex protein quantification based on stable isotope labeling by peptide dimethylation applied to cell and tissue lysates.
Proteomics 2008;8(22):4624-32.
2008: Simone Lemeer; Chris Jopling; Joost Gouw; shabaz mohammed; Albert J R Heck; Monique Slijper; Jeroen den Hertog
Comparative phosphoproteomics of zebrafish Fyn/Yes morpholino knockdown embryos.
Molecular & cellular proteomics : MCP 2008;7(11):2176-87.
2008: Reinout Raijmakers; Celia R Berkers; Annemieke de Jong; Huib Ovaa; Albert J R Heck; shabaz mohammed
Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity.
Molecular & cellular proteomics : MCP 2008;7(9):1755-62.
2008: Thijs van Vlijmen; Mathijs Vleugel; Melvin Evers; shabaz mohammed; Phebe S Wulf; Albert J R Heck; Casper C Hoogenraad; Peter van Der Sluijs
A unique residue in rab3c determines the interaction with novel binding protein Zwint-1.
FEBS letters 2008;582(19):2838-42.
2008: Jeffrey H Ringrose; Wouter W van Solinge; shabaz mohammed; Martina C O'Flaherty; Richard van Wijk; Albert J R Heck; Monique Slijper
Highly efficient depletion strategy for the two most abundant erythrocyte soluble proteins improves proteome coverage dramatically.
Journal of proteome research 2008;7(7):3060-3.
2008: shabaz mohammed; Kristina Lorenzen; Robert Kerkhoven; Bas van Breukelen; Alessandro Vannini; Patrick Cramer; Albert J R Heck
Multiplexed proteomics mapping of yeast RNA polymerase II and III allows near-complete sequence coverage and reveals several novel phosphorylation sites.
Analytical chemistry 2008;80(10):3584-92.
2008: Nadia Taouatas; Madalina M Drugan; Albert J R Heck; shabaz mohammed
Straightforward ladder sequencing of peptides using a Lys-N metalloendopeptidase.
Nature methods 2008;5(5):405-7.
2008: Jamila Laoukili; Monica Alvarez-Fernandez; Lars A T Meijer; Marie Stahl; shabaz mohammed; Livio Kleij; Albert J R Heck; René H Medema
Activation of FoxM1 during G2 requires cyclin A/Cdk-dependent relief of autorepression by the FoxM1 N-terminal domain.
Molecular and cellular biology 2008;28(9):3076-87.
2008: Paul J Boersema; shabaz mohammed; Albert J R Heck
Hydrophilic interaction liquid chromatography (HILIC) in proteomics.
Analytical and bioanalytical chemistry 2008;391(1):151-9.
2008: shabaz mohammed; Karsten Kraiczek; Martijn W H Pinkse; Simone Lemeer; Joris J Benschop; Albert J R Heck
Chip-Based Enrichment and NanoLC-MS/MS Analysis of Phosphopeptides from Whole Lysates.
Journal of proteome research 2008;7(4):1565-71.
2008: Simone Lemeer; Martijn W H Pinkse; shabaz mohammed; Bas van Breukelen; Jeroen den Hertog; Monique Slijper; Albert J R Heck
Online automated in vivo zebrafish phosphoproteomics: from large-scale analysis down to a single embryo.
Journal of proteome research 2008;7(4):1555-64.
2008: Martijn W H Pinkse; shabaz mohammed; Joost W Gouw; Bas van Breukelen; Harmjan R Vos; albert heck
Highly robust, automated, and sensitive online TiO2-based phosphoproteomics applied to study endogenous phosphorylation in Drosophila melanogaster.
Journal of proteome research 2008;7(2):687-97.
2007: Wilma Dormeyer; shabaz mohammed; Bas van Breukelen; Jeroen Krijgsveld; albert heck
Targeted analysis of protein termini.
Journal of proteome research 2007;6(12):4634-45.
2007: Joris J Benschop; shabaz mohammed; Martina O'Flaherty; albert heck; Monique Slijper; Frank L H Menke
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.
Molecular & cellular proteomics : MCP 2007;6(7):1198-214.
2007: MCarmen Duran; Jose Luis Martín-Ventura; shabaz mohammed; Maria G Barderas; Luis M Blanco-Colio; Sebastián Mas; Verónica Moral; Luis Ortega; José Tuñón; Ole N Jensen; Fernando Vivanco; jesus egido
Atorvastatin modulates the profile of proteins released by human atherosclerotic plaques.
European journal of pharmacology 2007;562(1-2):119-29.
2007: Claudia Voena; Chiara Conte; Chiara Ambrogio; Elisabetta Boeri Erba; Francesco Boccalatte; shabaz mohammed; Ole N Jensen; Giorgio Palestro; Giorgio Inghirami; Roberto Chiarle
The tyrosine phosphatase Shp2 interacts with NPM-ALK and regulates anaplastic lymphoma cell growth and migration.
Cancer research 2007;67(9):4278-86.
2007: Paul J Boersema; Nullin Divecha; albert heck; shabaz mohammed
Evaluation and optimization of ZIC-HILIC-RP as an alternative MudPIT strategy.
Journal of proteome research 2007;6(3):937-46.
2007: MCarmen Duran; Elisabetta Boeri Erba; shabaz mohammed; Jose Luis Martín-Ventura; jesus egido; Fernando Vivanco; Ole N Jensen
Characterization of HSP27 phosphorylation sites in human atherosclerotic plaque secretome.
Methods in molecular biology (Clifton, N.J.) 2007;357():151-63.
2006: Jonathan R Halstead; Jacco van Rheenen; Mireille H J Snel; Sarah Meeuws; shabaz mohammed; Clive D'Santos; albert heck; Kees Jalink; Nullin Divecha
A role for PtdIns(4,5)P2 and PIP5Kalpha in regulating stress-induced apoptosis.
Current biology : CB 2006;16(18):1850-6.
2006: David R Jones; Yvette Bultsma; Willem-Jan Keune; Jonathan R Halstead; Dallila Elouarrat; shabaz mohammed; albert heck; Clive D'Santos; Nullin Divecha
Nuclear PtdIns5P as a transducer of stress signaling: an in vivo role for PIP4Kbeta.
Molecular cell 2006;23(5):685-95.
2006: Silvia A Synowsky; Robert H H van den Heuvel; shabaz mohammed; Pim W W M Pijnappel; albert heck
Probing genuine strong interactions and post-translational modifications in the heterogeneous yeast exosome protein complex.
Molecular & cellular proteomics : MCP 2006;5(9):1581-92.
2006: Ivo Fierro-Monti; shabaz mohammed; Rune Matthiesen; Raffaela Santoro; Jorge Burns; David J Williams; Christopher G Proud; Moustapha Kassem; Ole N Jensen; Peter Roepstorff
Quantitative proteomics identifies Gemin5, a scaffolding protein involved in ribonucleoprotein assembly, as a novel partner for eukaryotic initiation factor 4E.
Journal of proteome research 2006;5(6):1367-78.
2006: Lene N Axelsen; Martin Stahlhut; shabaz mohammed; Bjarne Due Larsen; Morten Schak Nielsen; Niels-Henrik Holstein-Rathlou; Søren Andersen; Ole N Jensen; James K Hennan; Anne Louise Kjølbye
Identification of ischemia-regulated phosphorylation sites in connexin43: A possible target for the antiarrhythmic peptide analogue rotigaptide (ZP123).
Journal of molecular and cellular cardiology 2006;40(6):790-8.
2006: Sara Rinalducci; Martin R Larsen; shabaz mohammed; Lello Zolla
Novel protein phosphorylation site identification in spinach stroma membranes by titanium dioxide microcolumns and tandem mass spectrometry.
Journal of proteome research 2006;5(4):973-82.
2006: Felix Elortza; shabaz mohammed; Jakob Bunkenborg; Leonard J Foster; Thomas S Nühse; Urs Brodbeck; Scott C Peck; Ole N Jensen
Modification-specific proteomics of plasma membrane proteins: identification and characterization of glycosylphosphatidylinositol-anchored proteins released upon phospholipase D treatment.
Journal of proteome research 2006;5(4):935-43.
2006: Stacey Warwood; shabaz mohammed; Ileana M Cristea; Caroline Evans; Anthony D Whetton; Simon J Gaskell
Guanidination chemistry for qualitative and quantitative proteomics.
Rapid communications in mass spectrometry : RCM 2006;20(21):3245-56.
2006: E Sachon; shabaz mohammed; N Bache; Ole N Jensen
Phosphopeptide quantitation using amine-reactive isobaric tagging reagents and tandem mass spectrometry: application to proteins isolated by gel electrophoresis.
Rapid communications in mass spectrometry : RCM 2006;20(7):1127-34.
2005: Chiara Ambrogio; Claudia Voena; Andrea D Manazza; Roberto Piva; LUDOVICA RIERA; Laura Barberis; Carlotta Costa; Guido Tarone; Paola Defilippi; Emilio Hirsch; Elisabetta Boeri Erba; shabaz mohammed; Ole N Jensen; Giorgio Palestro; Giorgio Inghirami; Roberto Chiarle
p130Cas mediates the transforming properties of the anaplastic lymphoma kinase.
Blood 2005;106(12):3907-16.
2005: Albrecht Gruhler; Jesper V Olsen; shabaz mohammed; Peter Mortensen; Nils Færgeman; Matthias Mann; Ole N Jensen
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway.
Molecular & cellular proteomics : MCP 2005;4(3):310-27.
2005: Anne K Callesen; shabaz mohammed; Jakob Bunkenborg; Torben A Kruse; Søren Cold; Ole Mogensen; Rene dePont Christensen; Werner Vach; Per E Jørgensen; Ole N Jensen
Serum protein profiling by miniaturized solid-phase extraction and matrix-assisted laser desorption/ionization mass spectrometry.
Rapid communications in mass spectrometry : RCM 2005;19(12):1578-86.
2003: Christopher Taylor; Norman W Paton; Kevin L Garwood; Paul D Kirby; David Stead; Zhikang Yin; Eric Deutsch; Laura Selway; Janet Walker; Isabel Riba; shabaz mohammed; Michael J Deery; Julie A Howard; Tom P J Dunkley; Ruedi Aebersold; Douglas B Kell; Kathryn S Lilley; Peter Roepstorff; John R Yates; Andrew Brass; Alistair J P Brown; Phillip Cash; Simon J Gaskell; Simon Hubbard; Stephen G Oliver
A systematic approach to modeling, capturing, and disseminating proteomics experimental data.
Nature biotechnology 2003;21(3):247-54.
2003: Juan I Castrillo; Andrew Hayes; shabaz mohammed; Simon J Gaskell; Stephen G Oliver
An optimized protocol for metabolome analysis in yeast using direct infusion electrospray mass spectrometry.
Phytochemistry 2003;62(6):929-37.