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Nicholas Carriero

Research Profile

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Vanessa D Atayde; Stephen M Beverley; Nicholas Carriero; Joseph B Franklin; Lon-Fye Lye; Timothy Notton; Katherine Owens; Huafang Shi; Christian Tschudi; Elisabetta Ullu
The structure and repertoire of small interfering RNAs in Leishmania (Viannia) braziliensis reveal diversification in the trypanosomatid RNAi pathway.
T E Murphy; M E Tinetti; Gail J McAvay; Heather G Allore; Nicholas Carriero; C P Gross; H Lin
Deaths observed in Medicare beneficiaries: average attributable fraction and its longitudinal extension for many diseases.
Stephan Sanders; Nenad Sestan; Youeun Song; Jason L Stein; Nicole A Teran; Michael F Walker; A Jeremy Willsey; Kaya Bilguvar; Robert D Bjornson; Nicholas Carriero; Murim Choi; Bernie Devlin; Nicholas M DiLullo; Paul El-Fishawy; A Gulhan Ercan-Sencicek; Daniel H Geschwind; Murat Günel; Abha R Gupta; Richard P Lifton; Shrikant M Mane; Kyle A Meyer; John D Murdoch; Michael T Murtha; Ryan C Murtha; Gordon T Ober; John D Overton; Neelroop N Parikshak; Melanie J Raubeson; Kathryn Roeder; Sate Matthew
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.

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All Publications

2013: Vanessa D Atayde; Stephen M Beverley; Nicholas Carriero; Joseph B Franklin; Lon-Fye Lye; Timothy Notton; Katherine Owens; Huafang Shi; Christian Tschudi; Elisabetta Ullu
The structure and repertoire of small interfering RNAs in Leishmania (Viannia) braziliensis reveal diversification in the trypanosomatid RNAi pathway.
Molecular microbiology 2013;87(3):580-93.
2012: T E Murphy; M E Tinetti; Gail J McAvay; Heather G Allore; Nicholas Carriero; C P Gross; H Lin
Deaths observed in Medicare beneficiaries: average attributable fraction and its longitudinal extension for many diseases.
Statistics in medicine 2012;31(27):3313-9.
2012: Stephan Sanders; Nenad Sestan; Youeun Song; Jason L Stein; Nicole A Teran; Michael F Walker; A Jeremy Willsey; Kaya Bilguvar; Robert D Bjornson; Nicholas Carriero; Murim Choi; Bernie Devlin; Nicholas M DiLullo; Paul El-Fishawy; A Gulhan Ercan-Sencicek; Daniel H Geschwind; Murat Günel; Abha R Gupta; Richard P Lifton; Shrikant M Mane; Kyle A Meyer; John D Murdoch; Michael T Murtha; Ryan C Murtha; Gordon T Ober; John D Overton; Neelroop N Parikshak; Melanie J Raubeson; Kathryn Roeder; Sate Matthew
De novo mutations revealed by whole-exome sequencing are strongly associated with autism.
Nature 2012;485(7397):237-41.
2011: Annette M Molinaro; Nathaniel Rothman; Robert Bjornson; Nicholas Carriero; Patricia Hartge; Nilanjan Chatterjee
Power of data mining methods to detect genetic associations and interactions.
Human heredity 2011;72(2):85-97.
2010: Ekta Khurana; Hugo Y K Lam; Chao Cheng; Nicholas Carriero; Philip Cayting; Mark B Gerstein
Segmental duplications in the human genome reveal details of pseudogene formation.
Nucleic acids research 2010;38(20):6997-7007.
2009: Suganthi Balasubramanian; Deyou Zheng; Yuen-Jong Liu; Gang Fang; Adam Frankish; Nicholas Carriero; Rebecca Robilotto; Philip Cayting; Mark Gerstein
Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes.
Genome biology 2009;10(1):R2.
2009: Joel S Rozowsky; Ghia Euskirchen; Raymond K Auerbach; Zhengdong D Zhang; Theodore Gibson; Robert Bjornson; Nicholas Carriero; Michael Snyder; Mark Gerstein
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.
Nature biotechnology 2009;27(1):66-75.
2008: Robert D Bjornson; Nicholas Carriero; Christopher M Colangelo; Mark A Shifman; Kei-Hoi Cheung; Perry L Miller; Kenneth Williams
X!!Tandem, an improved method for running X!tandem in parallel on collections of commodity computers.
Journal of proteome research 2008;7(1):293-9.
2007: Kathryn L Stone; Robert D Bjornson; Gregory G Blasko; Can Bruce; Renee Cofrancesco; Nicholas Carriero; Christopher M Colangelo; Janet K Crawford; J Myron Crawford; Nancy C daSilva; Joseph D Deluca; James I Elliott; Margaret M Elliott; P John Flory; Ewa J Folta-Stogniew; Erol Gulcicek; Yong Kong; Tukiet T Lam; Ji Y Lee; Aiping Lin; Mary B LoPresti; Shrikant M Mane; Walter J McMurray; Irina R Tikhonova; Sheila Westman; Nancy A Williams; Terence L Wu; Zhao Hongyu; Kenneth R Williams
Keck Foundation Biotechnology Resource Laboratory, Yale University.
The Yale journal of biology and medicine 2007;80(4):195-211.
2007: Jan O Korbel; Alexander Eckehart Urban; Jason P Affourtit; Brian Godwin; Fabian Grubert; Jan Fredrik Simons; Philip M Kim; Dean Palejev; Nicholas Carriero; Lei Du; bruce taillon; Zhoutao Chen; Andrea Tanzer; A C Eugenia Saunders; jianxiang chi; Fengtang Yang; Nigel P Carter; Matthew E Hurles; Sherman M Weissman; Timothy T Harkins; Mark Gerstein; Michael Egholm; Michael Snyder
Paired-end mapping reveals extensive structural variation in the human genome.
Science (New York, N.Y.) 2007;318(5849):420-6.
2007: Thomas E Royce; Nicholas Carriero; Mark Gerstein
An efficient pseudomedian filter for tiling microrrays.
BMC bioinformatics 2007;8():186.
2007: Samuel C Flores; Long J Lu; Julie Yang; Nicholas Carriero; Mark Gerstein
Hinge Atlas: relating protein sequence to sites of structural flexibility.
BMC bioinformatics 2007;8():167.
2006: Zhaolei Zhang; Nicholas Carriero; Deyou Zheng; John Karro; Paul M Harrison; Mark Gerstein
PseudoPipe: an automated pseudogene identification pipeline.
Bioinformatics (Oxford, England) 2006;22(12):1437-9.
2005: Deyou Zheng; Zhaolei Zhang; Paul M Harrison; John Karro; Nicholas Carriero; Mark Gerstein
Integrated pseudogene annotation for human chromosome 22: evidence for transcription.
Journal of molecular biology 2005;349(1):27-45.
2005: Paul M Harrison; Deyou Zheng; Zhaolei Zhang; Nicholas Carriero; Mark Gerstein
Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.
Nucleic acids research 2005;33(8):2374-83.
2005: Nicholas Carriero; Michael V Osier; Kei-Hoi Cheung; Perry L Miller; Mark Gerstein; Hongyu Zhao; Baolin Wu; Scott Rifkin; Joseph Chang; Heping Zhang; Kevin White; Kenneth Williams; Martin Schultz
A high productivity/low maintenance approach to high-performance computation for biomedicine: four case studies.
Journal of the American Medical Informatics Association : JAMIA 2005;12(1):90-8.
2004: Zhaolei Zhang; Nicholas Carriero; Mark Gerstein
Comparative analysis of processed pseudogenes in the mouse and human genomes.
Trends in genetics : TIG 2004;20(2):62-7.
2003: Paul M Harrison; Nicholas Carriero; Yang Liu; Mark Gerstein
A "polyORFomic" analysis of prokaryote genomes using disabled-homology filtering reveals conserved but undiscovered short ORFs.
Journal of molecular biology 2003;333(5):885-92.