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Lada Biedermannova

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Chemicals & Drugs

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Brezovsky Jan; Eva Chovancova; Artur Gora; Antonin Pavelka; Lada Biedermannova; Jiri Damborsky
Software tools for identification, visualization and analysis of protein tunnels and channels.
Lada Biedermannova; Eva Chovancová; Jiří Damborsky; Artur Gora; Mihály Kovács; Zbynek Prokop; Rebecca C Wade
A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB.
Eva Chovancova; Petr Benes; Lada Biedermannova; Brezovsky Jan; Artur Gora; Martin Klvana; Barbora Kozlikova; Petr Medek; Antonin Pavelka; Jiri Sochor; Ondrej Strnad; Vilem Sustr; Jiri Damborsky
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.

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All Publications

2013: Brezovsky Jan; Eva Chovancova; Artur Gora; Antonin Pavelka; Lada Biedermannova; Jiri Damborsky
Software tools for identification, visualization and analysis of protein tunnels and channels.
Biotechnology advances 2013;31(1):38-49.
2012: Lada Biedermannova; Eva Chovancová; Jiří Damborsky; Artur Gora; Mihály Kovács; Zbynek Prokop; Rebecca C Wade
A single mutation in a tunnel to the active site changes the mechanism and kinetics of product release in haloalkane dehalogenase LinB.
The Journal of biological chemistry 2012;287(34):29062-74.
2012: Eva Chovancova; Petr Benes; Lada Biedermannova; Brezovsky Jan; Artur Gora; Martin Klvana; Barbora Kozlikova; Petr Medek; Antonin Pavelka; Jiri Sochor; Ondrej Strnad; Vilem Sustr; Jiri Damborsky
CAVER 3.0: a tool for the analysis of transport pathways in dynamic protein structures.
PLoS computational biology 2012;8(10):e1002708.
2008: Lada Biedermannova; Kevin E Riley; Karel Berka; Pavel Hobza; Jiri Vondrasek
Another role of proline: stabilization interactions in proteins and protein complexes concerning proline and tryptophane.
Physical chemistry chemical physics : PCCP 2008;10(42):6350-9.
2008: Shuangye Yin; Lada Biedermannova; Jiri Vondrasek; Nikolay V Dokholyan
MedusaScore: an accurate force field-based scoring function for virtual drug screening.
Journal of chemical information and modeling 2008;48(8):1656-62.
2008: Lada Biedermannova; Pavel Hobza; Jiri Vondrasek
Identifying stabilizing key residues in proteins using interresidue interaction energy matrix.
Proteins 2008;72(1):402-13.
2008: Andrei V Malkov; Pedro Ramírez-López; Lada Biedermannova; Lubomír Rulísek; Lenka Dufková; Martin Kotora; Fujiang Zhu; Pavel Kocovský
On the mechanism of asymmetric allylation of aldehydes with allyltrichlorosilanes catalyzed by QUINOX, a chiral isoquinoline N-oxide.
Journal of the American Chemical Society 2008;130(15):5341-8.
2007: Lada Biedermannova; Petr Jurecka; Pavel Hobza; Jiri Vondrasek
Model of peptide bond-aromatic ring interaction: correlated ab initio quantum chemical study.
The journal of physical chemistry. B 2007;111(33):9975-9.
2006: Andrei V Malkov; Angus J P Stewart Liddon; Pedro Ramírez-López; Lada Biedermannova; David Haigh; Pavel Kocovský
Remote chiral induction in the organocatalytic hydrosilylation of aromatic ketones and ketimines.
Angewandte Chemie (International ed. in English) 2006;45(9):1432-5.
2005: Jiri Vondrasek; Lada Biedermannova; Vojtech Klusák; Pavel Hobza
Unexpectedly strong energy stabilization inside the hydrophobic core of small protein rubredoxin mediated by aromatic residues: correlated ab initio quantum chemical calculations.
Journal of the American Chemical Society 2005;127(8):2615-9.