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Janusz Bujnicki

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Concepts & Ideas

Genes & Molecular Sequences

Amino Acid Sequence

Procedures

Sequence Alignment

Chemicals & Drugs

Physiology

Protein Folding

Phenomena

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Computational Biology

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Escherichia coli

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Co-Publications
Name
21
Rychlewski, Leszek
16
Radlinska, Monika
14
Feder, Marcin
10
Purta, Elzbieta
9
Cymerman, Iwona
9
Droogmans, Louis
8
Tkaczuk, Karolina
8
Pawlowski, Marcin
7
Grosjean, Henri
7
Kosinski, Jan
7
Kurowski, Michal
6
Pingoud, Alfred
6
Sasin, Joanna
5
Piekarowicz, Andrzej
5
Skowronek, Krzysztof

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Publications

TOP 3
Tuszynska I; Bujnicki J M
Predicting Atomic Details of the Unfolding Pathway for YibK, a Knotted Protein from the SPOUT Superfamily.
Leski Tomasz A; Caswell Clayton C; Pawlowski Marcin; Klinke David J; Bujnicki Janusz M; Hart Sean J; Lukomski Slawomir
Identification and classification of bcl genes and proteins of Bacillus cereus group organisms and their application in Bacillus anthracis detection and fingerprinting.
Purta Elzbieta; O'Connor Michelle; Bujnicki Janusz M; Douthwaite Stephen
YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.

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All Publications

2010: Tuszynska I; Bujnicki J M
Predicting Atomic Details of the Unfolding Pathway for YibK, a Knotted Protein from the SPOUT Superfamily.
Journal of biomolecular structure & dynamics 2010;27(4):511-20.
2009: Leski Tomasz A; Caswell Clayton C; Pawlowski Marcin; Klinke David J; Bujnicki Janusz M; Hart Sean J; Lukomski Slawomir
Identification and classification of bcl genes and proteins of Bacillus cereus group organisms and their application in Bacillus anthracis detection and fingerprinting.
Applied and environmental microbiology 2009;75(22):7163-72.
2009: Purta Elzbieta; O'Connor Michelle; Bujnicki Janusz M; Douthwaite Stephen
YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.
Molecular microbiology 2009;72(5):1147-58.
2009: Majorek Karolina A; Bujnicki Janusz M
Modeling of Escherichia coli Endonuclease V structure in complex with DNA.
Journal of molecular modeling 2009;15(2):173-82.
2009: Nakonieczna Joanna; Kaczorowski Tadeusz; Obarska-Kosinska Agnieszka; Bujnicki Janusz M
Functional analysis of MmeI from methanol utilizer Methylophilus methylotrophus, a subtype IIC restriction-modification enzyme related to type I enzymes.
Applied and environmental microbiology 2009;75(1):212-23.
2009: Czerwoniec Anna; Dunin-Horkawicz Stanislaw; Purta Elzbieta; Kaminska Katarzyna H; Kasprzak Joanna M; Bujnicki Janusz M; Grosjean Henri; Rother Kristian
MODOMICS: a database of RNA modification pathways. 2008 update.
Nucleic acids research 2009;37(Database issue):D118-21.
2009: Pawlowski Marcin; Lasica Anna M; Jagusztyn-Krynicka Elzbieta K; Bujnicki Janusz M
AAN82231 protein from uropathogenic E. coli CFT073 is a close paralog of DsbB enzymes and does not belong to the DsbI family.
Polish journal of microbiology / Polskie Towarzystwo Mikrobiologów = The Polish Society of Microbiologists 2009;58(2):181-4.
2008: Orlowski Jerzy; Mebrhatu Mehari Tesfazgi; Michiels Chris W; Bujnicki Janusz M; Aertsen Abram
Mutational analysis and a structural model of methyl-directed restriction enzyme Mrr.
Biochemical and biophysical research communications 2008;377(3):862-6.
2008: Gyrd-Hansen Mads; Darding Maurice; Miasari Maria; Santoro Massimo M; Zender Lars; Xue Wen; Tenev Tencho; da Fonseca Paula C A; Zvelebil Marketa; Bujnicki Janusz M; Lowe Scott; Silke John; Meier Pascal
IAPs contain an evolutionarily conserved ubiquitin-binding domain that regulates NF-kappaB as well as cell survival and oncogenesis.
Nature cell biology 2008;10(11):1309-17.
2008: Sunita S; Tkaczuk Karolina L; Purta Elzbieta; Kasprzak Joanna M; Douthwaite Stephen; Bujnicki Janusz M; Sivaraman J
Crystal structure of the Escherichia coli 23S rRNA:m5C methyltransferase RlmI (YccW) reveals evolutionary links between RNA modification enzymes.
Journal of molecular biology 2008;383(3):652-66.
2008: Purta Elzbieta; O'Connor Michelle; Bujnicki Janusz M; Douthwaite Stephen
YccW is the m5C methyltransferase specific for 23S rRNA nucleotide 1962.
Journal of molecular biology 2008;383(3):641-51.
2008: Purta Elzbieta; Kaminska Katarzyna H; Kasprzak Joanna M; Bujnicki Janusz M; Douthwaite Stephen
YbeA is the m3Psi methyltransferase RlmH that targets nucleotide 1915 in 23S rRNA.
RNA (New York, N.Y.) 2008;14(10):2234-44.
2008: Kosinski Jan; Plotz Guido; Guarné Alba; Bujnicki Janusz M; Friedhoff Peter
The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family.
Journal of molecular biology 2008;382(3):610-27.
2008: Orlowski Jerzy; Bujnicki Janusz M
Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses.
Nucleic acids research 2008;36(11):3552-69.
2008: Roovers Martine; Kaminska Katarzyna H; Tkaczuk Karolina L; Gigot Daniel; Droogmans Louis; Bujnicki Janusz M
The YqfN protein of Bacillus subtilis is the tRNA: m1A22 methyltransferase (TrmK).
Nucleic acids research 2008;36(10):3252-62.
2008: Roovers Martine; Oudjama Yamina; Kaminska Katarzyna H; Purta Elzbieta; Caillet Joël; Droogmans Louis; Bujnicki Janusz M
Sequence-structure-function analysis of the bifunctional enzyme MnmC that catalyses the last two steps in the biosynthesis of hypermodified nucleoside mnm5s2U in tRNA.
Proteins 2008;71(4):2076-85.
2008: White Joshua; Li Zhihua; Sardana Richa; Bujnicki Janusz M; Marcotte Edward M; Johnson Arlen W
Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits.
Molecular and cellular biology 2008;28(10):3151-61.
2008: Chua Teck Khiang; Bujnicki Janusz M; Tan Tien-Chye; Huynh Frederick; Patel Bharat K; Sivaraman J
The structure of sucrose phosphate synthase from Halothermothrix orenii reveals its mechanism of action and binding mode.
The Plant cell 2008;20(4):1059-72.
2008: Maravic Vlahovicek Gordana; Cubrilo Sonja; Tkaczuk Karolina L; Bujnicki Janusz M
Modeling and experimental analyses reveal a two-domain structure and amino acids important for the activity of aminoglycoside resistance methyltransferase Sgm.
Biochimica et biophysica acta 2008;1784(4):582-90.
2008: Sen Taner Z; Kloster Margaret; Jernigan Robert L; Kolinski Andrzej; Bujnicki Janusz M; Kloczkowski Andrzej
Predicting the complex structure and functional motions of the outer membrane transporter and signal transducer FecA.
Biophysical journal 2008;94(7):2482-91.
2008: Cymerman Iwona A; Chung Inn; Beckmann Benedikt M; Bujnicki Janusz M; Meiss Gregor
EXOG, a novel paralog of Endonuclease G in higher eukaryotes.
Nucleic acids research 2008;36(4):1369-79.
2008: Bhagwat Ashok S; Carpenter Michael A; Bujnicki Janusz M
Is AID a monomer in solution?
DNA repair 2008;7(3):349-50; author reply 351-2.
2008: Vasu Kommireddy; Saravanan Matheshwaran; Bujnicki Janusz M; Nagaraja Valakunja
Structural integrity of the beta beta alpha-Metal finger motif is required for DNA binding and stable protein-DNA complex formation in R.KpnI.
Biochimica et biophysica acta 2008;1784(2):269-75.
2008: Obarska-Kosinska Agnieszka; Taylor James E; Callow Philip; Orlowski Jerzy; Bujnicki Janusz M; Kneale G Geoff
HsdR subunit of the type I restriction-modification enzyme EcoR124I: biophysical characterisation and structural modelling.
Journal of molecular biology 2008;376(2):438-52.
2008: Mittra Bidyottam; Zamudio Jesse R; Bujnicki Janusz M; Stepinski Janusz; Darzynkiewicz Edward; Campbell David A; Sturm Nancy R
The TbMTr1 spliced leader RNA cap 1 2'-O-ribose methyltransferase from Trypanosoma brucei acts with substrate specificity.
The Journal of biological chemistry 2008;283(6):3161-72.
2008: Feder Marcin; Purta Elzbieta; Koscinski Lukasz; Cubrilo Sonja; Maravic Vlahovicek Gordana; Bujnicki Janusz M
Virtual screening and experimental verification to identify potential inhibitors of the ErmC methyltransferase responsible for bacterial resistance against macrolide antibiotics.
ChemMedChem 2008;3(2):316-22.
2008: Kaminska Katarzyna H; Bujnicki Janusz M
Bacteriophage Mu Mom protein responsible for DNA modification is a new member of the acyltransferase superfamily.
Cell cycle (Georgetown, Tex.) 2008;7(1):120-1.
2008: Kaminska Katarzyna H; Baraniak Urszula; Boniecki Michal; Nowaczyk Katarzyna; Czerwoniec Anna; Bujnicki Janusz M
Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms(2)io(6)A37 in tRNA.
Proteins 2008;70(1):1-18.
2008: Fukuda Eri; Kaminska Katarzyna H; Bujnicki Janusz M; Kobayashi Ichizo
Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases.
Genome biology 2008;9(11):R163.
2008: Kaminska Katarzyna H; Kawai Mikihiko; Boniecki Michal; Kobayashi Ichizo; Bujnicki Janusz M
Type II restriction endonuclease R.Hpy188I belongs to the GIY-YIG nuclease superfamily, but exhibits an unusual active site.
BMC structural biology 2008;8():48.
2008: Pawlowski Marcin; Gajda Michal J; Matlak Ryszard; Bujnicki Janusz M
MetaMQAP: a meta-server for the quality assessment of protein models.
BMC bioinformatics 2008;9():403.
2007: Sabates-Bellver Jacob; Van der Flier Laurens G; de Palo Mariagrazia; Cattaneo Elisa; Maake Caroline; Rehrauer Hubert; Laczko Endre; Kurowski Michal A; Bujnicki Janusz M; Menigatti Mirco; Luz Judith; Ranalli Teresa V; Gomes Vito; Pastorelli Alfredo; Faggiani Roberto; Anti Marcello; Jiricny Josef; Clevers Hans; Marra Giancarlo
Transcriptome profile of human colorectal adenomas.
Molecular cancer research : MCR 2007;5(12):1263-75.
2007: Zamudio Jesse R; Mittra Bidyottam; Foldynová-Trantírková Silvie; Zeiner Gusti M; Lukes Julius; Bujnicki Janusz M; Sturm Nancy R; Campbell David A
The 2'-O-ribose methyltransferase for cap 1 of spliced leader RNA and U1 small nuclear RNA in Trypanosoma brucei.
Molecular and cellular biology 2007;27(17):6084-92.
2007: Kosinski Jan; Kubareva Elena; Bujnicki Janusz M
A model of restriction endonuclease MvaI in complex with DNA: a template for interpretation of experimental data and a guide for specificity engineering.
Proteins 2007;68(1):324-36.
2007: Jakubauskas Arturas; Giedriene Jolanta; Bujnicki Janusz M; Janulaitis Arvydas
Identification of a single HNH active site in type IIS restriction endonuclease Eco31I.
Journal of molecular biology 2007;370(1):157-69.
2007: Pietal Michal J; Tuszynska Irina; Bujnicki Janusz M
PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure.
Bioinformatics (Oxford, England) 2007;23(11):1429-30.
2007: Koscinski Lukasz; Feder Marcin; Bujnicki Janusz M
Identification of a missing sequence and functionally important residues of 16S rRNA:m(1)A1408 methyltransferase KamB that causes bacterial resistance to aminoglycoside antibiotics.
Cell cycle (Georgetown, Tex.) 2007;6(10):1268-71.
2007: Chovancová Eva; Kosinski Jan; Bujnicki Janusz M; Damborský Jirí
Phylogenetic analysis of haloalkane dehalogenases.
Proteins 2007;67(2):305-16.
2007: Orlowski Jerzy; Boniecki Michal; Bujnicki Janusz M
I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.
Bioinformatics (Oxford, England) 2007;23(5):527-30.
2007: Pena Vladimir; Liu Sunbin; Bujnicki Janusz M; Lührmann Reinhard; Wahl Markus C
Structure of a multipartite protein-protein interaction domain in splicing factor prp8 and its link to retinitis pigmentosa.
Molecular cell 2007;25(4):615-24.
2007: Sasin Joanna M; Godzik Adam; Bujnicki Janusz M
SURF'S UP! - protein classification by surface comparisons.
Journal of biosciences 2007;32(1):97-100.
2007: Schäfer Patrick; Cymerman Iwona A; Bujnicki Janusz M; Meiss Gregor
Human lysosomal DNase IIalpha contains two requisite PLD-signature (HxK) motifs: evidence for a pseudodimeric structure of the active enzyme species.
Protein science : a publication of the Protein Society 2007;16(1):82-91.
2007: Ozanick Sarah G; Bujnicki Janusz M; Sem Daniel S; Anderson James T
Conserved amino acids in each subunit of the heteroligomeric tRNA m1A58 Mtase from Saccharomyces cerevisiae contribute to tRNA binding.
Nucleic acids research 2007;35(20):6808-19.
2007: Ibryashkina Elena M; Zakharova Marina V; Baskunov Vladimir B; Bogdanova Ekaterina S; Nagornykh Maxim O; Den'mukhamedov Marat M; Melnik Bogdan S; Kolinski Andrzej; Gront Dominik; Feder Marcin; Solonin Alexander S; Bujnicki Janusz M
Type II restriction endonuclease R.Eco29kI is a member of the GIY-YIG nuclease superfamily.
BMC structural biology 2007;7():48.
2007: Liu Yang; Li Zhengjun; Lin Qingsong; Kosinski Jan; Seetharaman J; Bujnicki Janusz M; Sivaraman J; Hew Choy-Leong
Structure and evolutionary origin of Ca2+-dependent herring type II antifreeze protein.
PloS one 2007;2(6):e548.
2007: Sunita S; Purta Elzbieta; Durawa Malgorzata; Tkaczuk Karolina L; Swaathi J; Bujnicki Janusz M; Sivaraman J
Functional specialization of domains tandemly duplicated within 16S rRNA methyltransferase RsmC.
Nucleic acids research 2007;35(13):4264-74.
2007: Tkaczuk Karolina L; Dunin-Horkawicz Stanislaw; Purta Elzbieta; Bujnicki Janusz M
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases.
BMC bioinformatics 2007;8():73.
2007: Miyazono Ken-ichi; Watanabe Miki; Kosinski Jan; Ishikawa Ken; Kamo Masayuki; Sawasaki Tatsuya; Nagata Koji; Bujnicki Janusz M; Endo Yaeta; Tanokura Masaru; Kobayashi Ichizo
Novel protein fold discovered in the PabI family of restriction enzymes.
Nucleic acids research 2007;35(6):1908-18.
2006: Cymerman Iwona A; Obarska Agnieszka; Skowronek Krzysztof J; Lubys Arvydas; Bujnicki Janusz M
Identification of a new subfamily of HNH nucleases and experimental characterization of a representative member, HphI restriction endonuclease.
Proteins 2006;65(4):867-76.
2006: Gros Laurent; Renodon-Cornière Axelle; de Saint Vincent Bruno Robert; Feder Marcin; Bujnicki Janusz M; Jacquemin-Sablon Alain
Characterization of prmt7alpha and beta isozymes from Chinese hamster cells sensitive and resistant to topoisomerase II inhibitors.
Biochimica et biophysica acta 2006;1760(11):1646-56.
2006: Godlewska Renata; Dzwonek Artur; Mikula Michal; Ostrowski Jerzy; Pawlowski Marcin; Bujnicki Janusz M; Jagusztyn-Krynicka Elzbieta K
Helicobacter pylori protein oxidation influences the colonization process.
International journal of medical microbiology : IJMM 2006;296(4-5):321-4.
2006: Han Runlin; Caswell Clayton C; Lukomska Ewa; Keene Douglas R; Pawlowski Marcin; Bujnicki Janusz M; Kim Jiyeun K; Lukomski Slawomir
Binding of the low-density lipoprotein by streptococcal collagen-like protein Scl1 of Streptococcus pyogenes.
Molecular microbiology 2006;61(2):351-67.
2006: Zamudio Jesse R; Mittra Bidyottam; Zeiner Gusti M; Feder Marcin; Bujnicki Janusz M; Sturm Nancy R; Campbell David A
Complete cap 4 formation is not required for viability in Trypanosoma brucei.
Eukaryotic cell 2006;5(6):905-15.
2006: Skowronek Krzysztof J; Kosinski Jan; Bujnicki Janusz M
Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis.
Proteins 2006;63(4):1059-68.
2006: Bheemanaik Shivakumara; Bujnicki Janusz M; Nagaraja Valakunja; Rao Desirazu N
Functional analysis of amino acid residues at the dimerisation interface of KpnI DNA methyltransferase.
Biological chemistry 2006;387(5):515-23.
2006: Chiang Peter K; Bujnicki Janusz M; Su Xinzhuan; Lanar David E
Malaria: therapy, genes and vaccines.
Current molecular medicine 2006;6(3):309-26.
2006: Sikora Ewa; Bielak-Zmijewska Anna; Magalska Adriana; Piwocka Katarzyna; Mosieniak Grazyna; Kalinowska Magdalena; Widlak Piotr; Cymerman Iwona A; Bujnicki Janusz M
Curcumin induces caspase-3-dependent apoptotic pathway but inhibits DNA fragmentation factor 40/caspase-activated DNase endonuclease in human Jurkat cells.
Molecular cancer therapeutics 2006;5(4):927-34.
2006: Samaranayake Mala; Bujnicki Janusz M; Carpenter Michael; Bhagwat Ashok S
Evaluation of molecular models for the affinity maturation of antibodies: roles of cytosine deamination by AID and DNA repair.
Chemical reviews 2006;106(2):700-19.
2006: Mikula Michal; Karczmarski Jakub; Dzwonek Artur; Rubel Tymon; Hennig Ewa; Dadlez Michal; Bujnicki Janusz M; Bomsztyk Karol; Ostrowski Jerzy
Casein kinases phosphorylate multiple residues spanning the entire hnRNP K length.
Biochimica et biophysica acta 2006;1764(2):299-306.
2006: Klimek-Tomczak K; Mikula M; Dzwonek A; Paziewska A; Karczmarski J; Hennig E; Bujnicki J M; Bragoszewski P; Denisenko O; Bomsztyk K; Ostrowski J
Editing of hnRNP K protein mRNA in colorectal adenocarcinoma and surrounding mucosa.
British journal of cancer 2006;94(4):586-92.
2006: Dunin-Horkawicz Stanislaw; Czerwoniec Anna; Gajda Michal J; Feder Marcin; Grosjean Henri; Bujnicki Janusz M
MODOMICS: a database of RNA modification pathways.
Nucleic acids research 2006;34(Database issue):D145-9.
2006: Bujnicki Janusz M
Protein-structure prediction by recombination of fragments.
Chembiochem : a European journal of chemical biology 2006;7(1):19-27.
2006: Metz Jutta; Wächter Andrea; Schmidt Bastian; Bujnicki Janusz M; Schwappach Blanche
The yeast Arr4p ATPase binds the chloride transporter Gef1p when copper is available in the cytosol.
The Journal of biological chemistry 2006;281(1):410-7.
2006: Wyszynska Agnieszka; Pawlowski Marcin; Bujnicki Janusz; Pawelec Dariusz; Van Putten Jos P M; Brzuszkiewicz Elzbieta; Jagusztyn-Krynicka Elzbieta K
Genetic characterisation of the cjaAB operon of Campylobacter coli.
Polish journal of microbiology / Polskie Towarzystwo Mikrobiologów = The Polish Society of Microbiologists 2006;55(2):85-94.
2006: Carpenter Michael; Divvela Pradeep; Pingoud Vera; Bujnicki Janusz; Bhagwat Ashok S
Sequence-dependent enhancement of hydrolytic deamination of cytosines in DNA by the restriction enzyme PspGI.
Nucleic acids research 2006;34(13):3762-70.
2006: Purta Elzbieta; van Vliet Françoise; Tkaczuk Karolina L; Dunin-Horkawicz Stanislaw; Mori Hirotada; Droogmans Louis; Bujnicki Janusz M
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase.
BMC molecular biology 2006;7():23.
2006: Gabant Guillaume; Auxilien Sylvie; Tuszynska Irina; Locard Marie; Gajda Michal J; Chaussinand Guylaine; Fernandez Bernard; Dedieu Alain; Grosjean Henri; Golinelli-Pimpaneau Béatrice; Bujnicki Janusz M; Armengaud Jean
THUMP from archaeal tRNA:m22G10 methyltransferase, a genuine autonomously folding domain.
Nucleic acids research 2006;34(9):2483-94.
2006: Dunin-Horkawicz Stanislaw; Feder Marcin; Bujnicki Janusz M
Phylogenomic analysis of the GIY-YIG nuclease superfamily.
BMC genomics 2006;7():98.
2006: Obarska Agnieszka; Blundell Alex; Feder Marcin; Vejsadová Stepánka; Sisáková Eva; Weiserová Marie; Bujnicki Janusz M; Firman Keith
Structural model for the multisubunit Type IC restriction-modification DNA methyltransferase M.EcoR124I in complex with DNA.
Nucleic acids research 2006;34(7):1992-2005.
2006: Zegers Ingrid; Gigot Daniel; van Vliet Françoise; Tricot Catherine; Aymerich Stéphane; Bujnicki Janusz M; Kosinski Jan; Droogmans Louis
Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase.
Nucleic acids research 2006;34(6):1925-34.
2006: Tkaczuk Karolina L; Obarska Agnieszka; Bujnicki Janusz M
Molecular phylogenetics and comparative modeling of HEN1, a methyltransferase involved in plant microRNA biogenesis.
BMC evolutionary biology 2006;6():6.
2005: Armalyte Elena; Bujnicki Janusz M; Giedriene Jolanta; Gasiunas Giedrius; Kosinski Jan; Lubys Arvydas
Mva1269I: a monomeric type IIS restriction endonuclease from Micrococcus varians with two EcoRI- and FokI-like catalytic domains.
The Journal of biological chemistry 2005;280(50):41584-94.
2005: Cymerman Iwona A; Meiss Gregor; Bujnicki Janusz M
DNase II is a member of the phospholipase D superfamily.
Bioinformatics (Oxford, England) 2005;21(21):3959-62.
2005: Kosinski Jan; Steindorf Ina; Bujnicki Janusz M; Giron-Monzon Luis; Friedhoff Peter
Analysis of the quaternary structure of the MutL C-terminal domain.
Journal of molecular biology 2005;351(4):895-909.
2005: Pingoud Vera; Geyer Hildegard; Geyer Rudolf; Kubareva Elena; Bujnicki Janusz M; Pingoud Alfred
Identification of base-specific contacts in protein-DNA complexes by photocrosslinking and mass spectrometry: a case study using the restriction endonuclease SsoII.
Molecular bioSystems 2005;1(2):135-41.
2005: Purushothaman Suresh K; Bujnicki Janusz M; Grosjean Henri; Lapeyre Bruno
Trm11p and Trm112p are both required for the formation of 2-methylguanosine at position 10 in yeast tRNA.
Molecular and cellular biology 2005;25(11):4359-70.
2005: Purta Elzbieta; van Vliet Françoise; Tricot Catherine; De Bie Lara G; Feder Marcin; Skowronek Krzysztof; Droogmans Louis; Bujnicki Janusz M
Sequence-structure-function relationships of a tRNA (m7G46) methyltransferase studied by homology modeling and site-directed mutagenesis.
Proteins 2005;59(3):482-8.
2005: Chmiel Agnieszka A; Radlinska Monika; Pawlak Sebastian D; Krowarsch Daniel; Bujnicki Janusz M; Skowronek Krzysztof J
A theoretical model of restriction endonuclease NlaIV in complex with DNA, predicted by fold recognition and validated by site-directed mutagenesis and circular dichroism spectroscopy.
Protein engineering, design & selection : PEDS 2005;18(4):181-9.
2005: Pingoud Vera; Sudina Anna; Geyer Hildegard; Bujnicki Janusz M; Lurz Rudi; Lüder Gerhild; Morgan Richard; Kubareva Elena; Pingoud Alfred
Specificity changes in the evolution of type II restriction endonucleases: a biochemical and bioinformatic analysis of restriction enzymes that recognize unrelated sequences.
The Journal of biological chemistry 2005;280(6):4289-98.
2005: Radlinska Monika; Kondrzycka-Dada Aneta; Piekarowicz Andrzej; Bujnicki Janusz M
Identification of amino acids important for target recognition by the DNA:m5C methyltransferase M.NgoPII by alanine-scanning mutagenesis of residues at the protein-DNA interface.
Proteins 2005;58(2):263-70.
2005: Raczko Anna M; Bujnicki Janusz M; Pawlowski Marcin; Godlewska Renata; Lewandowska Magdalena; Jagusztyn-Krynicka Elzbieta K
Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria.
Microbiology (Reading, England) 2005;151(Pt 1):219-31.
2005: Radlinska Monika; Piekarowicz Andrzej; Galimand Marc; Bujnicki Janusz M
Cloning and preliminary characterization of a GATC-specific beta2-class DNA:m6A methyltransferase encoded by transposon Tn1549 from Enterococcus spp.
Polish journal of microbiology / Polskie Towarzystwo Mikrobiologów = The Polish Society of Microbiologists 2005;54(3):249-52.
2005: Kosinski Jan; Gajda Michal J; Cymerman Iwona A; Kurowski Michal A; Pawlowski Marcin; Boniecki Michal; Obarska Agnieszka; Papaj Grzegorz; Sroczynska-Obuchowicz Paulina; Tkaczuk Karolina L; Sniezynska Paulina; Sasin Joanna M; Augustyn Anna; Bujnicki Janusz M; Feder Marcin
FRankenstein becomes a cyborg: the automatic recombination and realignment of fold recognition models in CASP6.
Proteins 2005;61 Suppl 7():106-13.
2005: Kolinski Andrzej; Bujnicki Janusz M
Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.
Proteins 2005;61 Suppl 7():84-90.
2005: Ishikawa Ken; Watanabe Miki; Kuroita Toshihiro; Uchiyama Ikuo; Bujnicki Janusz M; Kawakami Bunsei; Tanokura Masaru; Kobayashi Ichizo
Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi.
Nucleic acids research 2005;33(13):e112.
2005: Kosinski Jan; Feder Marcin; Bujnicki Janusz M
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function.
BMC bioinformatics 2005;6():172.
2005: Feder Marcin; Bujnicki Janusz M
Identification of a new family of putative PD-(D/E)XK nucleases with unusual phylogenomic distribution and a new type of the active site.
BMC genomics 2005;6(1):21.
2005: Pawlak Sebastian D; Radlinska Monika; Chmiel Agnieszka A; Bujnicki Janusz M; Skowronek Krzysztof J
Inference of relationships in the 'twilight zone' of homology using a combination of bioinformatics and site-directed mutagenesis: a case study of restriction endonucleases Bsp6I and PvuII.
Nucleic acids research 2005;33(2):661-71.
2005: Chmiel Agnieszka A; Bujnicki Janusz M; Skowronek Krzysztof J
A homology model of restriction endonuclease SfiI in complex with DNA.
BMC structural biology 2005;5():2.
2004: Ye Xiaoduan; O'Neil Patrick K; Foster Adrienne N; Gajda Michal J; Kosinski Jan; Kurowski Michal A; Bujnicki Janusz M; Friedman Alan M; Bailey-Kellogg Chris
Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.
Protein science : a publication of the Protein Society 2004;13(12):3298-313.
2004: Koudan E V; Bujnicki J M; Gromova E S
Homology modeling of the CG-specific DNA methyltransferase SssI and its complexes with DNA and AdoHcy.
Journal of biomolecular structure & dynamics 2004;22(3):339-45.
2004: Paziewska Agnieszka; Wyrwicz Lucjan S; Bujnicki Janusz M; Bomsztyk Karol; Ostrowski Jerzy
Cooperative binding of the hnRNP K three KH domains to mRNA targets.
FEBS letters 2004;577(1-2):134-40.
2004: Bujnicki Janusz M; Oudjama Yamina; Roovers Martine; Owczarek Sylwia; Caillet Joël; Droogmans Louis
Identification of a bifunctional enzyme MnmC involved in the biosynthesis of a hypermodified uridine in the wobble position of tRNA.
RNA (New York, N.Y.) 2004;10(8):1236-42.
2004: Armengaud Jean; Urbonavicius Jaunius; Fernandez Bernard; Chaussinand Guylaine; Bujnicki Janusz M; Grosjean Henri
N2-methylation of guanosine at position 10 in tRNA is catalyzed by a THUMP domain-containing, S-adenosylmethionine-dependent methyltransferase, conserved in Archaea and Eukaryota.
The Journal of biological chemistry 2004;279(35):37142-52.
2004: Sasin Joanna M; Bujnicki Janusz M
COLORADO3D, a web server for the visual analysis of protein structures.
Nucleic acids research 2004;32(Web Server issue):W586-9.
2004: Schäfer Patrick; Scholz Sebastian R; Gimadutdinow Oleg; Cymerman Iwona A; Bujnicki Janusz M; Ruiz-Carrillo Adolf; Pingoud Alfred; Meiss Gregor
Structural and functional characterization of mitochondrial EndoG, a sugar non-specific nuclease which plays an important role during apoptosis.
Journal of molecular biology 2004;338(2):217-28.
2004: Nes W David; Jayasimha Pruthvi; Zhou Wenxu; Kanagasabai Ragu; Jin Changxiao; Jaradat Tahhan T; Shaw Robert W; Bujnicki Janusz M
Sterol methyltransferase: functional analysis of highly conserved residues by site-directed mutagenesis.
Biochemistry 2004;43(2):569-76.
2004: Saravanan Matheshwaran; Bujnicki Janusz M; Cymerman Iwona A; Rao Desirazu N; Nagaraja Valakunja
Type II restriction endonuclease R.KpnI is a member of the HNH nuclease superfamily.
Nucleic acids research 2004;32(20):6129-35.
2004: Bujnicki Janusz M; Feder Marcin; Ayres Chastity L; Redman Kent L
Sequence-structure-function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.
Nucleic acids research 2004;32(8):2453-63.
2004: Maravic G; Bujnicki J M; Flögel M
Mutational analysis of basic residues in the N-terminus of the rRNA:m6A methyltransferase ErmC'.
Folia microbiologica 2004;49(1):3-7.
2004: Potluri S; Khan A A; Kuzminykh A; Bujnicki J M; Friedman A M; Bailey-Kellogg C
Geometric analysis of cross-linkability for protein fold discrimination.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2004;():447-58.
2004: Roovers Martine; Wouters Johan; Bujnicki Janusz M; Tricot Catherine; Stalon Victor; Grosjean Henri; Droogmans Louis
A primordial RNA modification enzyme: the case of tRNA (m1A) methyltransferase.
Nucleic acids research 2004;32(2):465-76.
2003: Kurowski Michal A; Bhagwat Ashok S; Papaj Grzegorz; Bujnicki Janusz M
Phylogenomic identification of five new human homologs of the DNA repair enzyme AlkB.
BMC genomics 2003;4(1):48.
2003: Bujnicki Janusz M
Crystallographic and bioinformatic studies on restriction endonucleases: inference of evolutionary relationships in the "midnight zone" of homology.
Current protein & peptide science 2003;4(5):327-37.
2003: Maravic Gordana; Feder Marcin; Pongor Sándor; Flögel Mirna; Bujnicki Janusz M
Mutational analysis defines the roles of conserved amino acid residues in the predicted catalytic pocket of the rRNA:m6A methyltransferase ErmC'.
Journal of molecular biology 2003;332(1):99-109.
2003: Gordon Richard K; Ginalski Krzysztof; Rudnicki Witold R; Rychlewski Leszek; Pankaskie Marvin C; Bujnicki Janusz M; Chiang Peter K
Anti-HIV-1 activity of 3-deaza-adenosine analogs. Inhibition of S-adenosylhomocysteine hydrolase and nucleotide congeners.
European journal of biochemistry / FEBS 2003;270(17):3507-17.
2003: Bujnicki Janusz M; Prigge Sean T; Caridha Diana; Chiang Peter K
Structure, evolution, and inhibitor interaction of S-adenosyl-L-homocysteine hydrolase from Plasmodium falciparum.
Proteins 2003;52(4):624-32.
2003: Maravic Gordana; Bujnicki Janusz M; Feder Marcin; Pongor Sándor; Flögel Mirna
Alanine-scanning mutagenesis of the predicted rRNA-binding domain of ErmC' redefines the substrate-binding site and suggests a model for protein-RNA interactions.
Nucleic acids research 2003;31(16):4941-9.
2003: Mouaikel John; Bujnicki Janusz M; Tazi Jamal; Bordonné Rémy
Sequence-structure-function relationships of Tgs1, the yeast snRNA/snoRNA cap hypermethylase.
Nucleic acids research 2003;31(16):4899-909.
2003: Scholz Sebastian R; Korn Christian; Bujnicki Janusz M; Gimadutdinow Oleg; Pingoud Alfred; Meiss Gregor
Experimental evidence for a beta beta alpha-Me-finger nuclease motif to represent the active site of the caspase-activated DNase.
Biochemistry 2003;42(31):9288-94.
2003: Bujnicki Janusz M; Albert Megan A; Nelson Donald J; Thurlow David L
Fold recognition, homology modeling, docking simulations, kinetics analysis and mutagenesis of ATP/CTP:tRNA nucleotidyltransferase from Methanococcus jannaschii.
Proteins 2003;52(3):349-59.
2003: Ginalski Krzysztof; Pas Jakub; Wyrwicz Lucjan S; von Grotthuss Marcin; Bujnicki Janusz M; Rychlewski Leszek
ORFeus: Detection of distant homology using sequence profiles and predicted secondary structure.
Nucleic acids research 2003;31(13):3804-7.
2003: Kurowski Michal A; Bujnicki Janusz M
GeneSilico protein structure prediction meta-server.
Nucleic acids research 2003;31(13):3305-7.
2003: Pingoud Vera; Conzelmann Charlotte; Kinzebach Steffen; Sudina Anna; Metelev Valeri; Kubareva Elena; Bujnicki Janusz M; Lurz Rudi; Lüder Gerhild; Xu Shuang-Yong; Pingoud Alfred
PspGI, a type II restriction endonuclease from the extreme thermophile Pyrococcus sp.: structural and functional studies to investigate an evolutionary relationship with several mesophilic restriction enzymes.
Journal of molecular biology 2003;329(5):913-29.
2003: De Bie Lara G S; Roovers Martine; Oudjama Yamina; Wattiez Ruddy; Tricot Catherine; Stalon Victor; Droogmans Louis; Bujnicki Janusz M
The yggH gene of Escherichia coli encodes a tRNA (m7G46) methyltransferase.
Journal of bacteriology 2003;185(10):3238-43.
2003: Droogmans Louis; Roovers Martine; Bujnicki Janusz M; Tricot Catherine; Hartsch Thomas; Stalon Victor; Grosjean Henri
Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures.
Nucleic acids research 2003;31(8):2148-56.
2003: Kurowski Michal A; Sasin Joanna M; Feder Marcin; Debski Janusz; Bujnicki Janusz M
Characterization of the cofactor-binding site in the SPOUT-fold methyltransferases by computational docking of S-adenosylmethionine to three crystal structures.
BMC bioinformatics 2003;4():9.
2003: Tchernaenko Vladimir; Radlinska Monika; Drabik Christopher; Bujnicki Janusz; Halvorson Herbert R; Lutter Leonard C
Topological measurement of an A-tract bend angle: comparison of the bent and straightened states.
Journal of molecular biology 2003;326(3):737-49.
2003: Feder Marcin; Pas Jakub; Wyrwicz Lucjan S; Bujnicki Janusz M
Molecular phylogenetics of the RrmJ/fibrillarin superfamily of ribose 2'-O-methyltransferases.
Gene 2003;302(1-2):129-38.
2003: Kosinski Jan; Cymerman Iwona A; Feder Marcin; Kurowski Michal A; Sasin Joanna M; Bujnicki Janusz M
A "FRankenstein's monster" approach to comparative modeling: merging the finest fragments of Fold-Recognition models and iterative model refinement aided by 3D structure evaluation.
Proteins 2003;53 Suppl 6():369-79.
2003: Sasin Joanna M; Kurowski Michal A; Bujnicki Janusz M
STRUCLA: a WWW meta-server for protein structure comparison and evolutionary classification.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i252-4.
2002: Bujnicki Janusz; Rychlewski Leszek; Fischer Daniel
Fold-recognition detects an error in the Protein Data Bank.
Bioinformatics (Oxford, England) 2002;18(10):1391-5.
2002: Bujnicki Janusz M; Feder Marcin; Radlinska Monika; Blumenthal Robert M
Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase.
Journal of molecular evolution 2002;55(4):431-44.
2002: Bujnicki Janusz M; Feder Marcin; Rychlewski Leszek; Fischer Daniel
Errors in the D. radiodurans large ribosomal subunit structure detected by protein fold-recognition and structure validation tools.
FEBS letters 2002;525(1-3):174-5.
2002: Godlewska Renata; Bujnicki Janusz M; Ostrowski Jerzy; Jagusztyn-Krynicka Elzbieta K
The hppA gene of Helicobacter pylori encodes the class C acid phosphatase precursor.
FEBS letters 2002;525(1-3):39-42.
2002: Bujnicki Janusz M; Leach Richard A; Debski Janusz; Rychlewski Leszek
Bioinformatic analyses of the tRNA: (guanine 26, N2,N2)-dimethyltransferase (Trm1) family.
Journal of molecular microbiology and biotechnology 2002;4(4):405-15.
2002: Xu Yi; Keene Douglas R; Bujnicki Janusz M; Höök Magnus; Lukomski Slawomir
Streptococcal Scl1 and Scl2 proteins form collagen-like triple helices.
The Journal of biological chemistry 2002;277(30):27312-8.
2002: Bujnicki Janusz M; Rychlewski Leszek
Fold-recognition analysis predicts that the Tag protein family shares a common domain with the helix-hairpin-helix DNA glycosylases.
DNA repair 2002;1(5):391-5.
2002: Bujnicki Janusz M; Rychlewski Leszek
RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure.
BMC bioinformatics 2002;3():10.
2002: Pintard Lionel; Lecointe François; Bujnicki Janusz M; Bonnerot Claire; Grosjean Henri; Lapeyre Bruno
Trm7p catalyses the formation of two 2'-O-methylriboses in yeast tRNA anticodon loop.
The EMBO journal 2002;21(7):1811-20.
2002: Pingoud Vera; Kubareva Elena; Stengel Gudrun; Friedhoff Peter; Bujnicki Janusz M; Urbanke Claus; Sudina Anna; Pingoud Alfred
Evolutionary relationship between different subgroups of restriction endonucleases.
The Journal of biological chemistry 2002;277(16):14306-14.
2002: Bujnicki Janusz M
Sequence permutations in the molecular evolution of DNA methyltransferases.
BMC evolutionary biology 2002;2():3.
2002: Pintard Lionel; Bujnicki Janusz M; Lapeyre Bruno; Bonnerot Claire
MRM2 encodes a novel yeast mitochondrial 21S rRNA methyltransferase.
The EMBO journal 2002;21(5):1139-47.
2002: Bujnicki Janusz M; Rychlewski Leszek
In silico identification, structure prediction and phylogenetic analysis of the 2'-O-ribose (cap 1) methyltransferase domain in the large structural protein of ssRNA negative-strand viruses.
Protein engineering 2002;15(2):101-8.
2002: Zhang Pent; Nicholson Diarmuid E; Bujnicki Janusz M; Su Xinzhuan; Brendle James J; Ferdig Michael; Kyle Dennis E; Milhous Wilbur K; Chiang Peter K
Angiogenesis inhibitors specific for methionine aminopeptidase 2 as drugs for malaria and leishmaniasis.
Journal of biomedical science 2002;9(1):34-40.
2002: Bujnicki Janusz M; Blumenthal Robert M; Rychlewski Leszek
Sequence analysis and structure prediction of 23S rRNA:m1G methyltransferases reveals a conserved core augmented with a putative Zn-binding domain in the N-terminus and family-specific elaborations in the C-terminus.
Journal of molecular microbiology and biotechnology 2002;4(1):93-9.
2001: Lundström J; Rychlewski L; Bujnicki J; Elofsson A
Pcons: a neural-network-based consensus predictor that improves fold recognition.
Protein science : a publication of the Protein Society 2001;10(11):2354-62.
2001: Bujnicki J M; Rotkiewicz P; Kolinski A; Rychlewski L
Three-dimensional modeling of the I-TevI homing endonuclease catalytic domain, a GIY-YIG superfamily member, using NMR restraints and Monte Carlo dynamics.
Protein engineering 2001;14(10):717-21.
2001: Bujnicki J M
In silico analysis of the tRNA:m1A58 methyltransferase family: homology-based fold prediction and identification of new members from Eubacteria and Archaea.
FEBS letters 2001;507(2):123-7.
2001: Bujnicki J M; Elofsson A; Fischer D; Rychlewski L
Structure prediction meta server.
Bioinformatics (Oxford, England) 2001;17(8):750-1.
2001: Bujnicki J M; Rychlewski L
Identification of a PD-(D/E)XK-like domain with a novel configuration of the endonuclease active site in the methyl-directed restriction enzyme Mrr and its homologs.
Gene 2001;267(2):183-91.
2001: Bujnicki J M; Rychlewski L
Unusual evolutionary history of the tRNA splicing endonuclease EndA: relationship to the LAGLIDADG and PD-(D/E)XK deoxyribonucleases.
Protein science : a publication of the Protein Society 2001;10(3):656-60.
2001: Bujnicki J M; Rychlewski L
The herpesvirus alkaline exonuclease belongs to the restriction endonuclease PD-(D/E)XK superfamily: insight from molecular modeling and phylogenetic analysis.
Virus genes 2001;22(2):219-30.
2001: Bujnicki J M; Elofsson A; Fischer D; Rychlewski L
LiveBench-1: continuous benchmarking of protein structure prediction servers.
Protein science : a publication of the Protein Society 2001;10(2):352-61.
2001: Bujnicki J M; Rychlewski L
Grouping together highly diverged PD-(D/E)XK nucleases and identification of novel superfamily members using structure-guided alignment of sequence profiles.
Journal of molecular microbiology and biotechnology 2001;3(1):69-72.
2001: Bujnicki J M; Radlinska M; Rychlewski L
Polyphyletic evolution of type II restriction enzymes revisited: two independent sources of second-hand folds revealed.
Trends in biochemical sciences 2001;26(1):9-11.
2001: Bujnicki J M; Radlinska M; Zaleski P; Piekarowicz A
Cloning of the Haemophilus influenzae Dam methyltransferase and analysis of its relationship to the Dam methyltransferase encoded by the HP1 phage.
Acta biochimica Polonica 2001;48(4):969-83.
2001: Bujnicki J M
Understanding the evolution of restriction-modification systems: clues from sequence and structure comparisons.
Acta biochimica Polonica 2001;48(4):935-67.
2001: Bujnicki J M
A model of structure and action of Sau3AI restriction endonuclease that comprises two MutH-like endonuclease domains within a single polypeptide.
Acta microbiologica Polonica 2001;50(3-4):219-31.
2001: Bujnicki J M; Elofsson A; Fischer D; Rychlewski L
LiveBench-2: large-scale automated evaluation of protein structure prediction servers.
Proteins 2001;Suppl 5():184-91.
2001: Radlinska M; Bujnicki J M
Site-directed mutagenesis defines the catalytic aspartate in the active site of the atypical DNA: m4C methyltransferase M.NgoMXV.
Acta microbiologica Polonica 2001;50(2):97-105.
2001: Radlinska M; Bujnicki J M
Cloning of enterohemorrhagic Escherichia coli phage VT-2 dam methyltransferase.
Acta microbiologica Polonica 2001;50(2):161-7.
2001: Bujnicki J M; Radlinska M
Cloning and characterization of M.LmoA118I, a novel DNA:m4C methyltransferase from the Listeria monocytogenes phage A118, a close homolog of M.NgoMXV.
Acta microbiologica Polonica 2001;50(2):155-60.
2001: Bujnicki J M; Rychlewski L
Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein.
Genome biology 2001;2(9):RESEARCH0038.
2001: Bujnicki J M; Rychlewski L
Sequence analysis and structure prediction of aminoglycoside-resistance 16S rRNA:m7G methyltransferases.
Acta microbiologica Polonica 2001;50(1):7-17.
2001: Bujnicki J M; Feder M; Radlinska M; Rychlewski L
mRNA:guanine-N7 cap methyltransferases: identification of novel members of the family, evolutionary analysis, homology modeling, and analysis of sequence-structure-function relationships.
BMC bioinformatics 2001;2():2.
2000: Bujnicki J M; Rychlewski L
Prediction of a common fold for all four subunits of the yeast tRNA splicing endonuclease: implications for the evolution of the EndA/Sen family.
FEBS letters 2000;486(3):328-9.
2000: Bujnicki J M
Phylogenomic analysis of 16S rRNA:(guanine-N2) methyltransferases suggests new family members and reveals highly conserved motifs and a domain structure similar to other nucleic acid amino-methyltransferases.
The FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2000;14(14):2365-8.
2000: Bujnicki J M; Radlinska M; Rychlewski L
Atomic model of the 5-methylcytosine-specific restriction enzyme McrA reveals an atypical zinc finger and structural similarity to betabetaalphaMe endonucleases.
Molecular microbiology 2000;37(5):1280-1.
2000: Bujnicki J M
Homology modelling of the DNA 5mC methyltransferase M.BssHII. Is permutation of functional subdomains common to all subfamilies of DNA methyltransferases?
International journal of biological macromolecules 2000;27(3):195-204.
2000: Bujnicki J M
Phylogeny of the restriction endonuclease-like superfamily inferred from comparison of protein structures.
Journal of molecular evolution 2000;50(1):39-44.
2000: Bujnicki J M; Rychlewski L
Prediction of a novel RNA 2'-O-ribose methyltransferase subfamily encoded by the Escherichia coli YgdE open reading frame and its orthologs.
Acta microbiologica Polonica 2000;49(3-4):253-60.
2000: Bujnicki J M
Sequence, structural, and evolutionary analysis of prokaryotic ribosomal protein L11 methyltransferases.
Acta microbiologica Polonica 2000;49(1):19-29.
1999: Radlinska M; Bujnicki J M; Piekarowicz A
Structural characterization of two tandemly arranged DNA methyltransferase genes from Neisseria gonorrhoeae MS11: N4-cytosine specific M.NgoMXV and nonfunctional 5-cytosine-type M.NgoMorf2P.
Proteins 1999;37(4):717-28.
1999: Bujnicki J M; Radlinska M
Molecular evolution of DNA-(cytosine-N4) methyltransferases: evidence for their polyphyletic origin.
Nucleic acids research 1999;27(22):4501-9.
1999: Bujnicki J M; Radlinska M
Is the HemK family of putative S-adenosylmethionine-dependent methyltransferases a "missing" zeta subfamily of adenine methyltransferases? A hypothesis.
IUBMB life 1999;48(3):247-9.
1999: Bujnicki J M
Comparison of protein structures reveals monophyletic origin of the AdoMet-dependent methyltransferase family and mechanistic convergence rather than recent differentiation of N4-cytosine and N6-adenine DNA methylation.
In silico biology 1999;1(4):175-82.
1999: Piekarowicz A; Bujnicki J
Cloning of the Dam methyltransferase gene from Haemophilus influenzae bacteriophage HP1.
Acta microbiologica Polonica 1999;48(2):123-9.
1999: Bujnicki J M; Radlinska M
Molecular phylogenetics of DNA 5mC-methyltransferases.
Acta microbiologica Polonica 1999;48(1):19-30.

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