FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

Ian Korf

Research Profile

Activities & Behaviors

Software

Procedures

Occupations

Concepts & Ideas

Genes & Molecular Sequences

Living Beings

Phenomena

Evolution, Molecular

Chemicals & Drugs

Co-author Network

Publications

TOP 3
Jordan L Meier; David J Segal; Abigail S Yu; Ian F Korf; Peter B Dervan
Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.
Daniël P Melters; Leocadia V Paliulis; Ian F Korf; Simon W-L Chan
Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis.
Danielle G Lemay; William F Martin; J Bruce German; Angie S Hinrichs; Ian F Korf; monique rijnkels; Katherine S Pollard
G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of Ian Korf (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2012: Jordan L Meier; David J Segal; Abigail S Yu; Ian F Korf; Peter B Dervan
Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.
Journal of the American Chemical Society 2012;134(42):17814-22.
2012: Daniël P Melters; Leocadia V Paliulis; Ian F Korf; Simon W-L Chan
Holocentric chromosomes: convergent evolution, meiotic adaptations, and genomic analysis.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2012;20(5):579-93.
2012: Danielle G Lemay; William F Martin; J Bruce German; Angie S Hinrichs; Ian F Korf; monique rijnkels; Katherine S Pollard
G-NEST: a gene neighborhood scoring tool to identify co-conserved, co-expressed genes.
BMC bioinformatics 2012;13():253.
2011: Genís Parra; Alan B Rose; K Bradnam; Ian F Korf
Comparative and functional analysis of intron-mediated enhancement signals reveals conserved features among plants.
Nucleic acids research 2011;39(13):5328-37.
2011: Alan B Rose; Keith Bradnam; Shahram Emami; Ian F Korf
Evidence for a DNA-Based Mechanism of Intron-Mediated Enhancement.
Frontiers in plant science 2011;2():98.
2011: Natalia Varlakhanova; Ian F Korf; Keith Bradnam; Rebecca Cotterman; Paul Knoepfler
Myc and Miz-1 have coordinate genomic functions including targeting Hox genes in human embryonic stem cells.
Epigenetics & chromatin 2011;4():20.
2011: Kimberly R Blahnik; Lei Dou; Lorigail Echipare; Sushma Iyengar; Henriette O'Geen; Erica Sanchez; Yongjun Zhao; Marco A Marra; Martin Hirst; Joseph F Costello; Ian F Korf; Peggy J Farnham
Characterization of the contradictory chromatin signatures at the 3' exons of zinc finger genes.
PloS one 2011;6(2):e17121.
2010: Allen Kovach; Jill L Wegrzyn; Genis Parra; Carson Holt; George E Bruening; Carol A Loopstra; James Hartigan; Mark Yandell; Charles H Langley; Ian F Korf; David B Neale
The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences.
BMC genomics 2010;11():420.
2010: Kimberly R Blahnik; Lei Dou; Henriette O'Geen; Timothy McPhillips; Xiaoqin Xu; Alina R Cao; Sushma Iyengar; Charles M Nicolet; Bertram Ludäscher; Ian F Korf; Peggy J Farnham
Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data.
Nucleic acids research 2010;38(3):e13.
2009: Artem Zykovich; Ian F Korf; David J Segal
Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.
Nucleic acids research 2009;37(22):e151.
2009: Ian F Korf; Alan B Rose
Applying word-based algorithms: the IMEter.
Methods in molecular biology (Clifton, N.J.) 2009;553():287-301.
2009: Genís Parra; Keith Bradnam; Zemin Ning; Thomas Keane; Ian F Korf
Assessing the gene space in draft genomes.
Nucleic acids research 2009;37(1):289-97.
2008: Alan B Rose; Tali Elfersi; Genis Parra; Ian F Korf
Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression.
The Plant cell 2008;20(3):543-51.
2008: Keith R Bradnam; Ian F Korf
Longer first introns are a general property of eukaryotic gene structure.
PloS one 2008;3(8):e3093.
2008: Brandi L Cantarel; Ian F Korf; Sofia M Robb; Genís Parra; Eric Ross; Barry Moore; Carson Holt; Alejandro Sanchez; Mark Yandell
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.
Genome research 2008;18(1):188-96.
2007: Elodie Ghedin; Shiliang Wang; David Spiro; Elisabet Caler; Qi Zhao; Jonathan Crabtree; Jonathan E Allen; Arthur L Delcher; David B Guiliano; Diego Miranda-Saavedra; Samuel V Angiuoli; Todd Creasy; Paolo Amedeo; Brian Haas; Najib M El-Sayed; Jennifer Wortman; Tamara Feldblyum; Luke Tallon; Michael Schatz; Martin Shumway; Hean Koo; Steven L Salzberg; Seth Schobel; Mihaela Pertea; Mihai Pop; Owen R White; Geoffrey J Barton; Clotilde K S Carlow; Michael J Crawford; Jennifer Daub; Matthew W Dimmic; Chris F Estes; Jeremy M Foster; Mehul Ganatra; William F Gregory; Nicholas M Johnson; Jinming Jin; Richard Komuniecki; Ian F Korf; Sanjay Kumar; Sandra Laney; Benwen Li; Wen Li; Tim H Lindblom; Sara Lustigman; Dong Ma; Claude V Maina; David M A Martin; James P McCarter; Larry McReynolds; Makedonka Mitreva; Thomas B Nutman; John Parkinson; José M Peregrín-Alvarez; Catherine Poole; Qinghu Ren; Lori Saunders; Ann E Sluder; Katherine Smith; Mario Stanke; Thomas R Unnasch; Jenna Ware; Aguan D Wei; Gary Weil; Deryck J Williams; Yinhua Zhang; Steven A Williams; Claire M Fraser-Liggett; Barton Slatko; Mark L Blaxter; Alan L Scott
Draft genome of the filarial nematode parasite Brugia malayi.
Science (New York, N.Y.) 2007;317(5845):1756-60.
2007: Genís Parra; Keith Bradnam; Ian F Korf
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.
Bioinformatics (Oxford, England) 2007;23(9):1061-7.
2005: Joseph A Bedell; Muhammad A Budiman; Andrew Nunberg; Robert W Citek; Dan Robbins; Joshua Jones; Elizabeth Flick; Theresa Rholfing; Jason Fries; Kourtney Bradford; Jennifer McMenamy; Michael Smith; Heather Holeman; Bruce A Roe; Graham Wiley; Ian F Korf; Pablo D Rabinowicz; Nathan Lakey; W Richard McCombie; Jeffrey A Jeddeloh; Robert A Martienssen
Sorghum genome sequencing by methylation filtration.
PLoS biology 2005;3(1):e13.
2004: Ian F Korf
Gene finding in novel genomes.
BMC bioinformatics 2004;5():59.
2004: Ashwin Hajarnavis; Ian F Korf; Richard Durbin
A probabilistic model of 3' end formation in Caenorhabditis elegans.
Nucleic acids research 2004;32(11):3392-9.
2003: Ian F Korf
Serial BLAST searching.
Bioinformatics (Oxford, England) 2003;19(12):1492-6.
2003: Paul Flicek; Evan Keibler; Ping Hu; Ian F Korf; Michael R Brent
Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.
Genome research 2003;13(1):46-54.
2002: Robert H Waterston; Kerstin Lindblad-Toh; Ewan Birney; Jane Rogers; Josep F Abril; Pankaj Agarwal; Richa Agarwala; Rachel Ainscough; Marina Alexandersson; Peter An; Stylianos Antonarakis; John Attwood; Robert Baertsch; Jonathon Bailey; Karen Barlow; Stephan Beck; Eric Berry; Bruce Birren; Toby Bloom; Peer Bork; Marc Botcherby; Nicolas Bray; Michael R Brent; Daniel G Brown; Stephen D Brown; Carol Bult; John Burton; Jonathan Butler; Robert D Campbell; piero carninci; Simon Cawley; Francesca Chiaromonte; Asif T Chinwalla; Deanna M Church; Michele Clamp; Christopher Clee; Francis S Collins; Lisa L Cook; Richard R Copley; Alan Coulson; Olivier Couronne; James Cuff; Val Curwen; Tim Cutts; Mark J Daly; Robert David; Joy Davies; Kimberly D Delehaunty; Justin Deri; Emmanouil T Dermitzakis; Colin Dewey; Nicholas J Dickens; Mark Diekhans; Sheila Dodge; Inna Dubchak; Diane M Dunn; Sean R Eddy; Laura Elnitski; Richard Emes; Pallavi Eswara; Eduardo Eyras; Adam Felsenfeld; Ginger A Fewell; Paul Flicek; Karen Foley; Wayne N Frankel; Lucinda A Fulton; Robert S Fulton; Terrence S Furey; Diane Gage; Richard A Gibbs; Gustavo Glusman; Sante Gnerre; Nick Goldman; Leo Goodstadt; Darren Grafham; Tina A Graves; Eric Green; Simon Gregory; Roderic Guigó; Mark Guyer; Ross C Hardison; David Haussler; Yoshihide Hayashizaki; LaDeana W Hillier; Angela Hinrichs; Wratko Hlavina; Timothy Holzer; Fan Hsu; Axin Hua; Tim Hubbard; Adrienne Hunt; Ian Jackson; David B Jaffe; L Steven Johnson; Matthew Jones; Thomas A Jones; Ann Joy; Michael Kamal; Elinor K. Karlsson; Donna Karolchik; Arkadiusz Kasprzyk; Jun Kawai; Evan Keibler; Cristyn Kells; W James Kent; Andrew Kirby; Diana L Kolbe; Ian F Korf; Raju S Kucherlapati; Edward J Kulbokas; David Kulp; Tom Landers; J P Leger; Steven Leonard; Ivica Letunic; Rosie Levine; Jia Li; Ming Li; Christine Lloyd; Susan Lucas; Bin Ma; Donna R Maglott; Elaine R Mardis; Lucy Matthews; Evan Mauceli; John H Mayer; Megan McCarthy; W Richard McCombie; Stuart McLaren; Kirsten McLay; John D McPherson; Jim Meldrim; Beverley Meredith; Jill P Mesirov; Webb Miller; Tracie L Miner; Emmanuel Mongin; Kate T Montgomery; Michael Morgan; Richard Mott; James C Mullikin; Donna M Muzny; William E Nash; Joanne O Nelson; Michael N Nhan; Robert Nicol; Zemin Ning; Chad Nusbaum; Michael J O'Connor; Yasushi Okazaki; Karen Oliver; Emma Overton-Larty; Lior Pachter; Genís Parra; Kymberlie H Pepin; Jane Peterson; Pavel Pevzner; Robert Plumb; Craig S Pohl; Alex Poliakov; Tracy C Ponce; Chris P Ponting; Simon Potter; Michael Quail; Alexandre Reymond; Bruce A Roe; Krishna M Roskin; Edward M Rubin; Alistair G Rust; Ralph Santos; Victor Sapojnikov; Brian Schultz; Jörg Schultz; Matthias S Schwartz; Scott Schwartz; Carol Scott; Steven Seaman; Steve Searle; Ted Sharpe; Andrew Sheridan; Ratna Shownkeen; Sarah Sims; Jonathan B Singer; Guy Slater; Arian Smit; Douglas R Smith; Brian Spencer; Arne Stabenau; Nicole Stange-Thomann; Charles Sugnet; Mikita Suyama; Glenn Tesler; Johanna Thompson; David Torrents; Evanne Trevaskis; John Tromp; Catherine Ucla; Abel Ureta-Vidal; Jade P Vinson; Andrew C Von Niederhausern; Claire M Wade; Melanie Wall; Ryan J Weber; Robert B Weiss; Michael Wendl; Anthony P West; Kris Wetterstrand; Raymond Wheeler; Simon Whelan; Jamey Wierzbowski; David Willey; Sophie Williams; Richard K Wilson; Eitan Winter; Kim C Worley; Dudley Wyman; Shan Yang; Shiaw-Pyng Yang; Evgeny M Zdobnov; Michael C Zody; Eric S Lander
Initial sequencing and comparative analysis of the mouse genome.
Nature 2002;420(6915):520-62.
2002: Jason E Stajich; David Block; Kris Boulez; Steven E Brenner; Steve Chervitz; Chris Dagdigian; Georg Fuellen; James G R Gilbert; Ian F Korf; Hilmar Lapp; Heikki Lehväslaiho; Chad Matsalla; Chris Mungall; Brian I Osborne; Matthew R Pocock; Peter Schattner; Martin Senger; Lincoln D Stein; Elia Stupka; Mark D Wilkinson; Ewan Birney
The Bioperl toolkit: Perl modules for the life sciences.
Genome research 2002;12(10):1611-8.
2001: Michael Wendl; Ian F Korf; Asif T Chinwalla; LaDeana W Hillier
Automated processing of raw DNA sequence data.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2001;20(4):41-8.
2001: Latif Shooshtari Nasrin; L M Linton; B Birren; C Nusbaum; M C Zody; J Baldwin; K Devon; K Dewar; M Doyle; W FitzHugh; R Funke; D Gage; K Harris; A Heaford; J Howland; L Kann; J Lehoczky; R LeVine; P McEwan; K McKernan; J Meldrim; J P Mesirov; C Miranda; W Morris; J Naylor; C Raymond; M Rosetti; R Santos; A Sheridan; C Sougnez; N Stange-Thomann; N Stojanovic; A Subramanian; D Wyman; J Rogers; John E Sulston; R Ainscough; S Beck; D Bentley; J Burton; C Clee; N Carter; A Coulson; R Deadman; P Deloukas; A Dunham; I Dunham; R Durbin; L French; D Grafham; S Gregory; T Hubbard; S Humphray; A Hunt; M Jones; C Lloyd; A McMurray; L Matthews; S Mercer; S Milne; J C Mullikin; Andrew Mungall; R Plumb; M Ross; R Shownkeen; S Sims; R H Waterston; R K Wilson; L W Hillier; J D McPherson; M A Marra; E R Mardis; L A Fulton; A T Chinwalla; K H Pepin; W R Gish; S L Chissoe; Michael Wendl; K D Delehaunty; T L Miner; A Delehaunty; J B Kramer; L L Cook; R S Fulton; D L Johnson; P J Minx; S W Clifton; T Hawkins; E Branscomb; Paul Predki; P Richardson; S Wenning; T Slezak; N Doggett; J F Cheng; A Olsen; S Lucas; C Elkin; E Uberbacher; M Frazier; R A Gibbs; D M Muzny; S E Scherer; John Bouck; E J Sodergren; K C Worley; C M Rives; J H Gorrell; M L Metzker; Susan Naylor; R S Kucherlapati; D L Nelson; G M Weinstock; Y Sakaki; A Fujiyama; M Hattori; T Yada; A Toyoda; T Itoh; C Kawagoe; H Watanabe; Y Totoki; T Taylor; J Weissenbach; R Heilig; W Saurin; F Artiguenave; P Brottier; T Bruls; E Pelletier; C Robert; P Wincker; D R Smith; L Doucette-Stamm; M Rubenfield; K Weinstock; H M Lee; J Dubois; A Rosenthal; M Platzer; G Nyakatura; S Taudien; A Rump; H Yang; J Yu; J Wang; G Huang; J Gu; L Hood; L Rowen; A Madan; S Qin; R W Davis; N A Federspiel; Anna Pia Abola; M J Proctor; Richard Myers; J Schmutz; M Dickson; J Grimwood; D R Cox; M V Olson; R Kaul; C Raymond; N Shimizu; K Kawasaki; S Minoshima; G A Evans; M Athanasiou; Roger A Schultz; B A Roe; F Chen; H Pan; J Ramser; H Lehrach; R Reinhardt; W R McCombie; M de la Bastide; N Dedhia; H Blöcker; K Hornischer; G Nordsiek; R Agarwala; L Aravind; J A Bailey; A Bateman; S Batzoglou; E Birney; P Bork; D G Brown; C B Burge; L Cerutti; H C Chen; D Church; M Clamp; R R Copley; T Doerks; S R Eddy; Evan E Eichler; T S Furey; J Galagan; J G Gilbert; C Harmon; Y Hayashizaki; D Haussler; Henning Hermjakob; K Hokamp; W Jang; L Steven Johnson; T A Jones; S Kasif; A Kaspryzk; S Kennedy; W James Kent; P Kitts; E V Koonin; Ian F Korf; D Kulp; D Lancet; T M Lowe; A McLysaght; T Mikkelsen; John V Moran; N Mulder; V J Pollara; C P Ponting; G Schuler; J Schultz; G Slater; A F Smit; Elia Stupka; J Szustakowski; D Thierry-Mieg; J Thierry-Mieg; L Wagner; J Wallis; R Wheeler; A Williams; Y I Wolf; K H Wolfe; S P Yang; R F Yeh; F Collins; M S Guyer; J Peterson; A Felsenfeld; K A Wetterstrand; A Patrinos; M J Morgan; P de Jong; J J Catanese; K Osoegawa; H Shizuya; S Choi; Y J Chen; J Szustakowki
Initial sequencing and analysis of the human genome.
Nature 2001;409(6822):860-921.
2001: Ian F Korf; Paul Flicek; D Duan; Michael R Brent
Integrating genomic homology into gene structure prediction.
Bioinformatics (Oxford, England) 2001;17 Suppl 1():S140-8.
2000: Ian F Korf; Warren Gish
MPBLAST : improved BLAST performance with multiplexed queries.
Bioinformatics (Oxford, England) 2000;16(11):1052-3.
2000: Joseph A Bedell; Ian F Korf; Warren Gish
MaskerAid: a performance enhancement to RepeatMasker.
Bioinformatics (Oxford, England) 2000;16(11):1040-1.
2000: W Brad Barbazuk; Ian F Korf; C Kadavi; J Heyen; S Tate; E Wun; Joseph A Bedell; John D McPherson; SL Johnson
The syntenic relationship of the zebrafish and human genomes.
Genome research 2000;10(9):1351-8.
2000: Rachel E Ellsworth; DC Jamison; Jeffrey W Touchman; SL Chissoe; V V Braden Maduro; Gerald Bouffard; Nicole L Dietrich; Stephen Beckstrom-Sternberg; LM Iyer; LA Weintraub; M Cotton; L Courtney; J Edwards; R Maupin; Philip Ozersky; T Rohlfing; P Wohldmann; Tracie L Miner; K Kemp; J Kramer; Ian F Korf; Kymberlie H Pepin; L Antonacci-Fulton; Robert S Fulton; Patrick J Minx; L W Hillier; Richard K Wilson; Robert H Waterston; Webb Miller; Eric Green
Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(3):1172-7.
1999: Gabor T Marth; Ian F Korf; M D Yandell; R T Yeh; Z Gu; H Zakeri; N O Stitziel; LaDeana W Hillier; Pui-Yan Kwok; Warren Gish
A general approach to single-nucleotide polymorphism discovery.
Nature genetics 1999;23(4):452-6.
1998: Ian F Korf; Y Fan; Susan Strome
The Polycomb group in Caenorhabditis elegans and maternal control of germline development.
Development (Cambridge, England) 1998;125(13):2469-78.