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Christopher Bystroff

Research Profile

Chemicals & Drugs

Physiology

Protein Folding

Genes & Molecular Sequences

Amino Acid Sequences

Concepts & Ideas

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Publications

TOP 3
Jasmine Shong; Yao-Ming Huang; Christopher Bystroff; Cynthia H Collins
Directed evolution of the quorum-sensing regulator EsaR for increased signal sensitivity.
Yao-Ming Huang; Sasmita Nayak; Christopher Bystroff
Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein.
Patrick M Buck; Christopher Bystroff
Constraining local structure can speed up folding by promoting structural polarization of the folding pathway.

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All Publications

2013: Jasmine Shong; Yao-Ming Huang; Christopher Bystroff; Cynthia H Collins
Directed evolution of the quorum-sensing regulator EsaR for increased signal sensitivity.
ACS chemical biology 2013;8(4):789-95.
2011: Yao-Ming Huang; Sasmita Nayak; Christopher Bystroff
Quantitative in vivo solubility and reconstitution of truncated circular permutants of green fluorescent protein.
Protein science : a publication of the Protein Society 2011;20(11):1775-80.
2011: Patrick M Buck; Christopher Bystroff
Constraining local structure can speed up folding by promoting structural polarization of the folding pathway.
Protein science : a publication of the Protein Society 2011;20(6):959-69.
2011: Diana I Paredes; Derek J Pitman; Kyle Watters; Christopher Bystroff; Jonathan S Dordick
Comparative void-volume analysis of psychrophilic and mesophilic enzymes: Structural bioinformatics of psychrophilic enzymes reveals sources of core flexibility.
BMC structural biology 2011;11():42.
2010: Philippa J Reeder; Yao-Ming Huang; Jonathan S Dordick; Christopher Bystroff
A rewired green fluorescent protein: folding and function in a nonsequential, noncircular GFP permutant.
Biochemistry 2010;49(51):10773-9.
2009: Benjamin J Cole; Christopher Bystroff
Alpha helical crossovers favor right-handed supersecondary structures by kinetic trapping: the phone cord effect in protein folding.
Protein science : a publication of the Protein Society 2009;18(8):1602-8.
2009: Patrick M Buck; Christopher Bystroff
Simulating protein folding initiation sites using an alpha-carbon-only knowledge-based force field.
Proteins 2009;76(2):331-42.
2009: Saeed Salem; Mohammed J Zaki; Christopher Bystroff
Iterative non-sequential protein structural alignment.
Journal of bioinformatics and computational biology 2009;7(3):571-96.
2009: Yao-ming Huang; Christopher Bystroff
Complementation and reconstitution of fluorescence from circularly permuted and truncated green fluorescent protein.
Biochemistry 2009;48(5):929-40.
2008: Zujun Shentu; Mohammad Al Hasan; Christopher Bystroff; Mohammed J Zaki
Context shapes: Efficient complementary shape matching for protein-protein docking.
Proteins 2008;70(3):1056-73.
2008: Arti V Shinde; Christopher Bystroff; Chunyu Wang; Mariette G Vogelezang; Peter A Vincent; Richard O Hynes; Livingston Van De Water
Identification of the peptide sequences within the EIIIA (EDA) segment of fibronectin that mediate integrin alpha9beta1-dependent cellular activities.
The Journal of biological chemistry 2008;283(5):2858-70.
2008: Christopher Bystroff; Bobbie-Jo Webb-Robertson
Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure.
BMC bioinformatics 2008;9():429.
2008: Mohammed J Zaki; Christopher Bystroff
Protein structure prediction. Preface.
Methods in molecular biology (Clifton, N.J.) 2008;413():v-vii.
2008: Christopher Bystroff; Anders Krogh
Hidden Markov Models for prediction of protein features.
Methods in molecular biology (Clifton, N.J.) 2008;413():173-98.
2007: Ke Xia; Marta Manning; Helai Hesham; Qishan Lin; Christopher Bystroff; Wilfredo Colón
Identifying the subproteome of kinetically stable proteins via diagonal 2D SDS/PAGE.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(44):17329-34.
2006: Yao-Ming Huang; Christopher Bystroff
Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.
Bioinformatics (Oxford, England) 2006;22(4):413-22.
2005: Xin Yuan; Christopher Bystroff
Non-sequential structure-based alignments reveal topology-independent core packing arrangements in proteins.
Bioinformatics (Oxford, England) 2005;21(7):1010-9.
2004: Yuna Hou; Wynne Hsu; Mong Li Lee; Christopher Bystroff
Remote homolog detection using local sequence-structure correlations.
Proteins 2004;57(3):518-30.
2004: Mohammed J Zaki; Vinay Nadimpally; Deb Bardhan; Christopher Bystroff
Predicting protein folding pathways.
Bioinformatics (Oxford, England) 2004;20 Suppl 1():i386-93.
2004: Christopher Bystroff; Yu Shao; Xin Yuan
Five hierarchical levels of sequence-structure correlation in proteins.
Applied bioinformatics 2004;3(2-3):97-104.
2003: Yuna Hou; Wynne Hsu; Mong Li Lee; Christopher Bystroff
Efficient remote homology detection using local structure.
Bioinformatics (Oxford, England) 2003;19(17):2294-301.
2003: Christopher Bystroff; Shekhar Garde
Helix propensities of short peptides: molecular dynamics versus bioinformatics.
Proteins 2003;50(4):552-62.
2003: Xin Yuan; Yu Shao; Christopher Bystroff
Ab initio protein structure prediction using pathway models.
Comparative and functional genomics 2003;4(4):397-401.
2003: Mohammed J Zaki; Shan Jin; Christopher Bystroff
Mining residue contacts in proteins using local structure predictions.
IEEE transactions on systems, man, and cybernetics. Part B, Cybernetics : a publication of the IEEE Systems, Man, and Cybernetics Society 2003;33(5):789-801.
2003: Yu Shao; Christopher Bystroff
Predicting interresidue contacts using templates and pathways.
Proteins 2003;53 Suppl 6():497-502.
2002: Christopher Bystroff
MASKER: improved solvent-excluded molecular surface area estimations using Boolean masks.
Protein engineering 2002;15(12):959-65.
2002: Christopher Bystroff; Yu Shao
Fully automated ab initio protein structure prediction using I-SITES, HMMSTR and ROSETTA.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S54-61.
2000: Christopher Bystroff; V Thorsson; D Baker
HMMSTR: a hidden Markov model for local sequence-structure correlations in proteins.
Journal of molecular biology 2000;301(1):173-90.