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Philip Bourne
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Research Profile (preview)
Chemicals & Drugs
Occupations
Concepts & Ideas
Activities & Behaviors
Genes & Molecular Sequences
Procedures
Physiology
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Network (preview)
25
Shindyalov, Ilya
11
Westbrook, John
10
Berman, Helen
9
Murray-Rust, J
9
Lakey, Jeremy
9
Weissig, Helge
7
Ponomarenko, Julia
6
Bluhm, Wolfgang
6
Feng, Zukang
5
Fleri, Ward
5
Li, Wilfred
5
Veretnik, Stella
5
Scheeff, Eric
4
Sette, Alessandro
4
Westbrook, John
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All Publications
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2009: Xie Lei; Xie Li; Bourne Philip E
A unified statistical model to support local sequence order independent similarity searching for ligand-binding sites and its application to genome-based drug discovery.
Bioinformatics (Oxford, England) 2009;25(12):i305-12.
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2009: Valas Ruben E; Yang Song; Bourne Philip E
Nothing about protein structure classification makes sense except in the light of evolution.
Current opinion in structural biology 2009;19(3):329-34.
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2009: Xie Li; Li Jerry; Xie Lei; Bourne Philip E
Drug discovery using chemical systems biology: identification of the protein-ligand binding network to explain the side effects of CETP inhibitors.
PLoS computational biology 2009;5(5):e1000387.
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2009: Veretnik Stella; Wills Christopher; Youkharibache Philippe; Valas Ruben E; Bourne Philip E
Sm/Lsm genes provide a glimpse into the early evolution of the spliceosome.
PLoS computational biology 2009;5(3):e1000315.
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2009: Browne Evie; Dickin Rosemary; Bourne Philip E
A Review of 2008 for PLoS Computational Biology.
PLoS computational biology 2009;5(1):e1000275.
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2008: Gramada Apostol; Bourne Philip E
Resolving a distribution of charge into intrinsic multipole moments: a rankwise distributed multipole analysis.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;78(6 Pt 2):066601.
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2008: Bourne Philip E; Fink J Lynn
I am not a scientist, I am a number.
PLoS computational biology 2008;4(12):e1000247.
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2008: Karp Peter D; Sherlock Gavin; Gerlt John A; Sim Ida; Paulsen Ian; Babbitt Patricia C; Laderoute Keith; Hunter Lawrence; Sternberg Paul; Wooley John; Bourne Philip E
Changes to NIH grant system may backfire.
Science (New York, N.Y.) 2008;322(5905):1187-8.
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2008: Zhang Qing; Wang Peng; Kim Yohan; Haste-Andersen Pernille; Beaver John; Bourne Philip E; Bui Huynh-Hoa; Buus Soren; Frankild Sune; Greenbaum Jason; Lund Ole; Lundegaard Claus; Nielsen Morten; Ponomarenko Julia; Sette Alessandro; Zhu Zhanyang; Peters Bjoern
Immune epitope database analysis resource (IEDB-AR).
Nucleic acids research 2008;36(Web Server issue):W513-8.
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2008: Fink J Lynn; Kushch Sergey; Williams Parker R; Bourne Philip E
BioLit: integrating biological literature with databases.
Nucleic acids research 2008;36(Web Server issue):W385-9.
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2008: Bauer Raphael A; Bourne Philip E; Formella Arno; Frömmel Cornelius; Gille Christoph; Goede Andrean; Guerler Aysam; Hoppe Andreas; Knapp Ernst-Walter; Pöschel Thorsten; Wittig Burghardt; Ziegler Valentin; Preissner Robert
Superimpose: a 3D structural superposition server.
Nucleic acids research 2008;36(Web Server issue):W47-54.
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2008: Corpas Manuel; Gehlenborg Nils; Janga Sarath Chandra; Bourne Philip E
Ten simple rules for organizing a scientific meeting.
PLoS computational biology 2008;4(6):e1000080.
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2008: Valas Ruben E; Bourne Philip E
Rethinking proteasome evolution: two novel bacterial proteasomes.
Journal of molecular evolution 2008;66(5):494-504.
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2008: Xie Lei; Bourne Philip E
Detecting evolutionary relationships across existing fold space, using sequence order-independent profile-profile alignments.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(14):5441-6.
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2008: Bourne Philip E; Fink J Lynn; Gerstein Mark
Open access: taking full advantage of the content.
PLoS computational biology 2008;4(3):e1000037.
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2008: Günther Stefan; Kuhn Michael; Dunkel Mathias; Campillos Monica; Senger Christian; Petsalaki Evangelia; Ahmed Jessica; Urdiales Eduardo Garcia; Gewiess Andreas; Jensen Lars Juhl; Schneider Reinhard; Skoblo Roman; Russell Robert B; Bourne Philip E; Bork Peer; Preissner Robert
SuperTarget and Matador: resources for exploring drug-target relationships.
Nucleic acids research 2008;36(Database issue):D919-22.
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2008: Ponomarenko Julia; Bui Huynh-Hoa; Li Wei; Fusseder Nicholas; Bourne Philip E; Sette Alessandro; Peters Bjoern
ElliPro: a new structure-based tool for the prediction of antibody epitopes.
BMC bioinformatics 2008;9():514.
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2008: Veretnik Stella; Fink J Lynn; Bourne Philip E
Computational biology resources lack persistence and usability.
PLoS computational biology 2008;4(7):e1000136.
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2008: Briedis Kristine M; Starr Ayelet; Bourne Philip E
Analysis of the human kinome using methods including fold recognition reveals two novel kinases.
PloS one 2008;3(2):e1597.
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2008: Caporaso J Gregory; Deshpande Nita; Fink J Lynn; Bourne Philip E; Cohen K Bretonnel; Hunter Lawrence
Intrinsic evaluation of text mining tools may not predict performance on realistic tasks.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2008;():640-51.
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2007: Gu Jenny; Bourne Philip E
Ten simple rules for graduate students.
PLoS computational biology 2007;3(11):e229.
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2007: Xie Lei; Wang Jian; Bourne Philip E
In silico elucidation of the molecular mechanism defining the adverse effect of selective estrogen receptor modulators.
PLoS computational biology 2007;3(11):e217.
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2007: Erren Thomas C; Cullen Paul; Erren Michael; Bourne Philip E
Ten simple rules for doing your best research, according to Hamming.
PLoS computational biology 2007;3(10):1839-40.
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2007: Bourne Philip E; Brenner Steven E
Developing computational biology.
PLoS computational biology 2007;3(9):1669.
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2007: Chung Jo-Lan; Beaver John E; Scheeff Eric D; Bourne Philip E
Con-Struct Map: a comparative contact map analysis tool.
Bioinformatics (Oxford, England) 2007;23(18):2491-2.
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2007: Berman Helen M; Henrick Kim; Nakamura Haruki; Markley John; Bourne Philip E; Westbrook John
Realism about PDB.
Nature biotechnology 2007;25(8):845-6; author reply 846.
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2007: Erren Thomas C; Bourne Philip E
Ten simple rules for a good poster presentation.
PLoS computational biology 2007;3(5):e102.
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2007: Bourne Philip E
Ten simple rules for making good oral presentations.
PLoS computational biology 2007;3(4):e77.
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2007: Vicens Quentin; Bourne Philip E
Ten simple rules for a successful collaboration.
PLoS computational biology 2007;3(3):e44.
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2007: Guda Purnima; Bourne Philip E; Guda Chittibabu
Conserved motifs in voltage-sensing and pore-forming modules of voltage-gated ion channel proteins.
Biochemical and biophysical research communications 2007;352(2):292-8.
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2007: Ponomarenko Julia V; Bourne Philip E
Antibody-protein interactions: benchmark datasets and prediction tools evaluation.
BMC structural biology 2007;7():64.
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2007: Chung Jo-Lan; Wang Wei; Bourne Philip E
High-throughput identification of interacting protein-protein binding sites.
BMC bioinformatics 2007;8():223.
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2007: Xie Lei; Bourne Philip E
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand binding sites.
BMC bioinformatics 2007;8 Suppl 4():S9.
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2007: Beaver John E; Bourne Philip E; Ponomarenko Julia V
EpitopeViewer: a Java application for the visualization and analysis of immune epitopes in the Immune Epitope Database and Analysis Resource (IEDB).
Immunome research 2007;3():3.
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2007: Gu Jenny; Bourne Philip E
Identifying allosteric fluctuation transitions between different protein conformational states as applied to Cyclin Dependent Kinase 2.
BMC bioinformatics 2007;8():45.
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2006: Bourne Philip E; Friedberg Iddo
Ten simple rules for selecting a postdoctoral position.
PLoS computational biology 2006;2(11):e121.
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2006: Dupont Christopher L; Yang Song; Palenik Brian; Bourne Philip E
Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(47):17822-7.
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2006: Bourne Philip E; McEntyre Johanna
Biocurators: contributors to the world of science.
PLoS computational biology 2006;2(10):e142.
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2006: Bourne Philip E; Korngreen Alon
Ten simple rules for reviewers.
PLoS computational biology 2006;2(9):e110.
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2006: Berman Helen M; Burley Stephen K; Chiu Wah; Sali Andrej; Adzhubei Alexei; Bourne Philip E; Bryant Stephen H; Dunbrack Roland L; Fidelis Krzysztof; Frank Joachim; Godzik Adam; Henrick Kim; Joachimiak Andrzej; Heymann Bernard; Jones David; Markley John L; Moult John; Montelione Gaetano T; Orengo Christine; Rossmann Michael G; Rost Burkhard; Saibil Helen; Schwede Torsten; Standley Daron M; Westbrook John D
Outcome of a workshop on archiving structural models of biological macromolecules.
Structure (London, England : 1993) 2006;14(8):1211-7.
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2006: Holland Timothy A; Veretnik Stella; Shindyalov Ilya N; Bourne Philip E
Partitioning protein structures into domains: why is it so difficult?
Journal of molecular biology 2006;361(3):562-90.
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2006: Gu Jenny; Gribskov Michael; Bourne Philip E
Wiggle-predicting functionally flexible regions from primary sequence.
PLoS computational biology 2006;2(7):e90.
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2006: Chung Jo-Lan; Wang Wei; Bourne Philip E
Exploiting sequence and structure homologs to identify protein-protein binding sites.
Proteins 2006;62(3):630-40.
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2006: Neshich Goran; Bourne Philip E; Brunak Søren
ISMB 2006.
PLoS computational biology 2006;2(2):e11.
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2006: Bourne Philip E; Chalupa Leo M
Ten simple rules for getting grants.
PLoS computational biology 2006;2(2):e12.
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2006: Kouranov Andrei; Xie Lei; de la Cruz Joanna; Chen Li; Westbrook John; Bourne Philip E; Berman Helen M
The RCSB PDB information portal for structural genomics.
Nucleic acids research 2006;34(Database issue):D302-5.
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2006: Scheeff Eric D; Bourne Philip E
Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.
BMC bioinformatics 2006;7():410.
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2006: Vita Randi; Vaughan Kerrie; Zarebski Laura; Salimi Nima; Fleri Ward; Grey Howard; Sathiamurthy Muthu; Mokili John; Bui Huynh-Hoa; Bourne Philip E; Ponomarenko Julia; de Castro Romulo; Chan Russell K; Sidney John; Wilson Stephen S; Stewart Scott; Way Scott; Peters Bjoern; Sette Alessandro
Curation of complex, context-dependent immunological data.
BMC bioinformatics 2006;7():341.
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2006: Gramada Apostol; Bourne Philip E
Multipolar representation of protein structure.
BMC bioinformatics 2006;7():242.
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2005: Bourne Philip E
Ten simple rules for getting published.
PLoS computational biology 2005;1(5):e57.
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2005: Scheeff Eric D; Bourne Philip E
Structural evolution of the protein kinase-like superfamily.
PLoS computational biology 2005;1(5):e49.
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2005: Sathiamurthy Muthuraman; Peters Bjoern; Bui Huynh-Hoa; Sidney John; Mokili John; Wilson Stephen S; Fleri Ward; McGuinness Deborah L; Bourne Philip E; Sette Alessandro
An ontology for immune epitopes: application to the design of a broad scope database of immune reactivities.
Immunome research 2005;1(1):2.
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2005: Xie Lei; Bourne Philip E
Functional coverage of the human genome by existing structures, structural genomics targets, and homology models.
PLoS computational biology 2005;1(3):e31.
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2005: Bourne Philip E; Brenner Steven E; Eisen Michael B
PLoS Computational Biology: a new community journal.
PLoS computational biology 2005;1(1):e4.
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2005: Ponomarenko Julia V; Bourne Philip E; Shindyalov Ilya N
Assigning new GO annotations to protein data bank sequences by combining structure and sequence homology.
Proteins 2005;58(4):855-65.
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2005: Yang Song; Doolittle Russell F; Bourne Philip E
Phylogeny determined by protein domain content.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(2):373-8.
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2005: Deshpande Nita; Addess Kenneth J; Bluhm Wolfgang F; Merino-Ott Jeffrey C; Townsend-Merino Wayne; Zhang Qing; Knezevich Charlie; Xie Lie; Chen Li; Feng Zukang; Green Rachel Kramer; Flippen-Anderson Judith L; Westbrook John; Berman Helen M; Bourne Philip E
The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema.
Nucleic acids research 2005;33(Database issue):D233-7.
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2005: Babbitt Patricia C; Bourne Philip E; Mooney Sean D
Introduction to informatics approaches in structural genomics: modeling and representation of function from macromolecular structure.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():319-21.
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2005: Moreland John L; Gramada Apostol; Buzko Oleksandr V; Zhang Qing; Bourne Philip E
The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications.
BMC bioinformatics 2005;6():21.
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2004: Pekurovsky D; Shindyalov I N; Bourne P E
A case study of high-throughput biological data processing on parallel platforms.
Bioinformatics (Oxford, England) 2004;20(12):1940-7.
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2004: Guda Chittibabu; Lu Sifang; Scheeff Eric D; Bourne Philip E; Shindyalov Ilya N
CE-MC: a multiple protein structure alignment server.
Nucleic acids research 2004;32(Web Server issue):W100-3.
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2004: Veretnik Stella; Bourne Philip E; Alexandrov Nickolai N; Shindyalov Ilya N
Toward consistent assignment of structural domains in proteins.
Journal of molecular biology 2004;339(3):647-78.
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2004: Krebs Werner G; Bourne Philip E
Statistically rigorous automated protein annotation.
Bioinformatics (Oxford, England) 2004;20(7):1066-73.
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2004: Krebs Werner G; Bourne Philip E
Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data.
Journal of bioinformatics and computational biology 2004;2(1):61-75.
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2004: Bourne Philip E; Westbrook John; Berman Helen M
The Protein Data Bank and lessons in data management.
Briefings in bioinformatics 2004;5(1):23-30.
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2004: Bourne Philip E; Addess Kenneth J; Bluhm Wolfgang F; Chen Li; Deshpande Nita; Feng Zukang; Fleri Ward; Green Rachel; Merino-Ott Jeffrey C; Townsend-Merino Wayne; Weissig Helge; Westbrook John; Berman Helen M
The distribution and query systems of the RCSB Protein Data Bank.
Nucleic acids research 2004;32(Database issue):D223-5.
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2004: Jia Yuting; Dewey T Gregory; Shindyalov Ilya N; Bourne Philip E
A new scoring function and associated statistical significance for structure alignment by CE.
Journal of computational biology : a journal of computational molecular cell biology 2004;11(5):787-99.
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2004: Bourne P E; Allerston C K J; Krebs W; Li W; Shindyalov I N; Godzik A; Friedberg I; Liu T; Wild D; Hwang S; Ghahramani Z; Chen L; Westbrook J
The status of structural genomics defined through the analysis of current targets and structures.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2004;():375-86.
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2003: Doctor K S; Reed J C; Godzik A; Bourne P E
The apoptosis database.
Cell death and differentiation 2003;10(6):621-33.
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2003: Yang Peng; Craig Paul A; Goodsell David; Bourne Philip E
BioEditor-simplifying macromolecular structure annotation.
Bioinformatics (Oxford, England) 2003;19(7):897-8.
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2003: Bourne Philip E
Free access to publicly funded databases is vital.
Nature 2003;421(6925):786.
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2003: Krebs Werner G; Bourne Philip E
Statistical and visual morph movie analysis of crystallographic mutant selection bias in protein mutation resource data.
Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference 2003;2():180-9.
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2003: Li Wilfred W; Quinn Greg B; Alexandrov Nickolai N; Bourne Philip E; Shindyalov Ilya N
A comparative proteomics resource: proteins of Arabidopsis thaliana.
Genome biology 2003;4(8):R51.
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2003: Bourne Philip E
CASP and CAFASP experiments and their findings.
Methods of biochemical analysis 2003;44():501-7.
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2003: Bourne Philip E; Shindyalov Ilya N
Structure comparison and alignment.
Methods of biochemical analysis 2003;44():321-37.
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2003: Reedy Boojala V B; Bourne Philip E
Protein structure evolution and the SCOP database.
Methods of biochemical analysis 2003;44():239-48.
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2003: Weissig Helge; Bourne Philip E
Other structure-based databases.
Methods of biochemical analysis 2003;44():217-36.
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2002: Greer Douglas S; Westbrook John D; Bourne Philip E
An ontology driven architecture for derived representations of macromolecular structure.
Bioinformatics (Oxford, England) 2002;18(9):1280-1.
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2002: Reddy Boojala V B; Li Wilfred W; Bourne Philip E
Use of conserved key amino acid positions to morph protein folds.
Biopolymers 2002;64(3):139-45.
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2002: Weissig Helge; Bourne Philip E
Protein structure resources.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 6 No 1):908-15.
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2002: Berman Helen M; Battistuz Tammy; Bhat T N; Bluhm Wolfgang F; Bourne Philip E; Burkhardt Kyle; Feng Zukang; Gilliland Gary L; Iype Lisa; Jain Shri; Fagan Phoebe; Marvin Jessica; Padilla David; Ravichandran Veerasamy; Schneider Bohdan; Thanki Narmada; Weissig Helge; Westbrook John D; Zardecki Christine
The Protein Data Bank.
Acta crystallographica. Section D, Biological crystallography 2002;58(Pt 6 No 1):899-907.
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2002: Bourne Philip E
Science's policy on data deposition.
Science (New York, N.Y.) 2002;296(5573):1609; author reply 1609.
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2002: Kuller Anne; Fleri Ward; Bluhm Wolfgang F; Smith Janet L; Westbrook John; Bourne Philip E
A biologist's guide to synchrotron facilities: the BioSync web resource.
Trends in biochemical sciences 2002;27(4):213-5.
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2002: Li Wilfred W; Reddy Boojala V B; Tate John G; Shindyalov Ilya N; Bourne Philip E
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase.
Nucleic acids research 2002;30(1):409-11.
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2002: Westbrook John; Feng Zukang; Jain Shri; Bhat T N; Thanki Narmada; Ravichandran Veerasamy; Gilliland Gary L; Bluhm Wolfgang; Weissig Helge; Greer Douglas S; Bourne Philip E; Berman Helen M
The Protein Data Bank: unifying the archive.
Nucleic acids research 2002;30(1):245-8.
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2002: Ponomarenko Julia V; Bourne Philip E; Shindyalov Ilya N
Building an automated classification of DNA-binding protein domains.
Bioinformatics (Oxford, England) 2002;18 Suppl 2():S192-201.
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2001: Bourne P E; Tilley S; Lakey J H
Membranes. Engineering and design.
Current opinion in structural biology 2001;11(4):391-2.
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2001: Kuller A; Fleri W; Bluhm W F; Bourne P E; Smith J L; Westbrook J
Announcement of the BioSync web site.
Nature structural biology 2001;8(8):663.
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2001: Reddy B V; Li W W; Shindyalov I N; Bourne P E
Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins.
Proteins 2001;42(2):148-63.
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2001: Li W W; Reddy B V; Shindyalov I N; Bourne P E
CKAAPs DB: a conserved key amino acid positions database.
Nucleic acids research 2001;29(1):329-31.
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2001: Shindyalov I N; Bourne P E
A database and tools for 3-D protein structure comparison and alignment using the Combinatorial Extension (CE) algorithm.
Nucleic acids research 2001;29(1):228-9.
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2001: Tate J G; Moreland J L; Bourne P E
Design and implementation of a collaborative molecular graphics environment.
Journal of molecular graphics & modelling 2001;19(3-4):280-7, 369-73.
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2001: Guda C; Scheeff E D; Bourne P E; Shindyalov I N
A new algorithm for the alignment of multiple protein structures using Monte Carlo optimization.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():275-86.
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2000: Berman H M; Bhat T N; Bourne P E; Feng Z; Gilliland G; Weissig H; Westbrook J
The Protein Data Bank and the challenge of structural genomics.
Nature structural biology 2000;7 Suppl():957-9.
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2000: Bourne P E; Murray-Rust J; Lakey J H
Engineering and design membrane proteins lipids. Web alert.
Current opinion in structural biology 2000;10(4):397-8.
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2000: Bourne P E
Bioinformatics meets data mining: time to dance?
Trends in biotechnology 2000;18(6):228-30.
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2000: Westbrook J D; Bourne P E
STAR/mmCIF: an ontology for macromolecular structure.
Bioinformatics (Oxford, England) 2000;16(2):159-68.
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2000: Shindyalov I N; Bourne P E
An alternative view of protein fold space.
Proteins 2000;38(3):247-60.
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2000: Tsigelny I; Shindyalov I N; Bourne P E; Südhof T C; Taylor P
Common EF-hand motifs in cholinesterases and neuroligins suggest a role for Ca2+ binding in cell surface associations.
Protein science : a publication of the Protein Society 2000;9(1):180-5.
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2000: Berman H M; Westbrook J; Feng Z; Gilliland G; Bhat T N; Weissig H; Shindyalov I N; Bourne P E
The Protein Data Bank.
Nucleic acids research 2000;28(1):235-42.
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1999: Weissig H; Bourne P E
An analysis of the Protein Data Bank in search of temporal and global trends.
Bioinformatics (Oxford, England) 1999;15(10):807-31.
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1999: Quinn G B; Taylor A; Wang H P; Bourne P E
Development of Internet-based multimedia applications.
Trends in biochemical sciences 1999;24(8):321-4.
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1999: Quinn G; Wang H P; Martinez D; Bourne P E
Developing protein documentaries and other multimedia presentations for molecular biology.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1999;():380-91.
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1998: Murray-Rust J; Lakey J H; Bourne P E
Catalysis and regulation. Proteins. Web alert.
Current opinion in structural biology 1998;8(6):673-4.
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1998: Weissig H; Shindyalov I N; Bourne P E
Macromolecular structure databases: past progress and future challenges.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 6 Pt 1):1085-94.
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1998: Lakey J H; Bourne P E; Murray-Rust J
Carbohydrates and glycoconjugates biophysical methods.
Current opinion in structural biology 1998;8(5):543-4.
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1998: Shindyalov I N; Bourne P E
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
Protein engineering 1998;11(9):739-47.
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1998: Bourne P E; Murray-Rust J; Lakey J H
Lipids engineering and design membrane proteins. Web alert.
Current opinion in structural biology 1998;8(4):411-2.
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1998: Lakey J H; Bourne P E; Murray-Rust J
Macromolecular assemblages theory and simulation. Web alert.
Current opinion in structural biology 1998;8(2):137-8.
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1998: Bourne P E; Murray-Rust J; Lakey J H
Protein-nucleic acid interactions folding and binding. Web alert.
Current opinion in structural biology 1998;8(1):9-10.
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1997: Murray-Rust J; Lakey J H; Bourne P E
Web alert. Catalysis and regulation. Proteins.
Current opinion in structural biology 1997;7(6):765.
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1997: Smith C M; Shindyalov I N; Veretnik S; Gribskov M; Taylor S S; Ten Eyck L F; Bourne P E
The protein kinase resource.
Trends in biochemical sciences 1997;22(11):444-6.
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1997: Shindyalov I N; Bourne P E
Protein data representation and query using optimized data decomposition.
Computer applications in the biosciences : CABIOS 1997;13(5):487-96.
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1997: Lakey J H; Bourne P E; Murray-Rust J
Web alert. Theory and simulation. Macromolecular assemblages.
Current opinion in structural biology 1997;7(2):285.
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1997: Bourne P E; Murray-Rust J; Lakey J H
Web alert. Folding and binding. Protein-nucleic acid interactions.
Current opinion in structural biology 1997;7(1):135.
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1997: Bourne P E; Berman H M; McMahon B; Watenpaugh K D; Westbrook J D; Fitzgerald P M
Macromolecular Crystallographic Information File.
Methods in enzymology 1997;277():571-90.
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1997: Biggs J; Pu C; Bourne P
Code generation through annotation of macromolecular structure data.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1997;5():52-5.
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1994: Chang W; Shindyalov I N; Pu C; Bourne P E
Design and application of PDBlib, a C++ macromolecular class library.
Computer applications in the biosciences : CABIOS 1994;10(6):575-86.
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1994: Shindyalov I N; Chang W; Pu C; Bourne P E
Macromolecular query language (MMQL): prototype data model and implementation.
Protein engineering 1994;7(11):1311-22.
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1994: Zhang P; Schon E A; Fischer S G; Cayanis E; Weiss J; Kistler S; Bourne P E
An algorithm based on graph theory for the assembly of contigs in physical mapping of DNA.
Computer applications in the biosciences : CABIOS 1994;10(3):309-17.
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1994: Chang W; Shindyalov I N; Pu C; Bourne P E
Design and application of a C++ macromolecular class library.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1994;2():70-7.
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1990: Bourne P E; Hendrickson W A
A CPU benchmark for protein crystallographic refinement.
Computers in biology and medicine 1990;20(4):219-30.
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1988: Bourne P E; Hendrickson W A
Selecting a processor for computations in molecular biophysics.
Computers in biology and medicine 1988;18(5):341-9.
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1987: Bourne P E; Desai N
PRONUC: a software package for the analysis of protein and nucleic acid sequences.
Computer methods and programs in biomedicine 1987;24(1):27-36.
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