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andrew clark

Research Profile

Phenomena

Evolution, Molecular

Genes & Molecular Sequences

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TOP 3
B J Casey; C E Glatt; N Tottenham; F Soliman; K Bath; D Amso; M Altemus; S Pattwell; R Jones; L Levita; Bruce S McEwen; A M Magariños; M Gunnar; K M Thomas; J Mezey; andrew clark; Barbara L Hempstead; F S Lee
Brain-derived neurotrophic factor as a model system for examining gene by environment interactions across development.
Rasmus Nielsen; Melissa J Hubisz; Ines Hellmann; Dara Torgerson; Aida M Andrés; Anders Albrechtsen; Ryan Gutenkunst; Mark D Adams; Michele Cargill; Adam Boyko; Amit Indap; Carlos Bustamante; andrew clark
Darwinian and demographic forces affecting human protein coding genes.
Lisa A McGraw; Greg Gibson; andrew clark; Mariana F Wolfner
Strain-dependent differences in several reproductive traits are not accompanied by early postmating transcriptome changes in female Drosophila melanogaster.

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All Publications

2009: B J Casey; C E Glatt; N Tottenham; F Soliman; K Bath; D Amso; M Altemus; S Pattwell; R Jones; L Levita; Bruce S McEwen; A M Magariños; M Gunnar; K M Thomas; J Mezey; andrew clark; Barbara L Hempstead; F S Lee
Brain-derived neurotrophic factor as a model system for examining gene by environment interactions across development.
Neuroscience 2009;164(1):108-20.
2009: Rasmus Nielsen; Melissa J Hubisz; Ines Hellmann; Dara Torgerson; Aida M Andrés; Anders Albrechtsen; Ryan Gutenkunst; Mark D Adams; Michele Cargill; Adam Boyko; Amit Indap; Carlos Bustamante; andrew clark
Darwinian and demographic forces affecting human protein coding genes.
Genome research 2009;19(5):838-49.
2009: Lisa A McGraw; Greg Gibson; andrew clark; Mariana F Wolfner
Strain-dependent differences in several reproductive traits are not accompanied by early postmating transcriptome changes in female Drosophila melanogaster.
Genetics 2009;181(4):1273-80.
2009: Jeffrey G Scott; N Liu; Michael Kristensen; andrew clark
A case for sequencing the genome of Musca domestica (Diptera: Muscidae).
Journal of medical entomology 2009;46(2):175-82.
2008: Leonardo B Koerich; Xiaoyun Wang; andrew clark; Antonio Bernardo Carvalho
Low conservation of gene content in the Drosophila Y chromosome.
Nature 2008;456(7224):949-51.
2008: Anthony J Greenberg; Sarah R Stockwell; andrew clark
Evolutionary constraint and adaptation in the metabolic network of Drosophila.
Molecular biology and evolution 2008;25(12):2537-46.
2008: andrew clark
Genome sequences from extinct relatives.
Cell 2008;134(3):388-9.
2008: Lisa A McGraw; andrew clark; Mariana F Wolfner
Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins.
Genetics 2008;179(3):1395-408.
2008: Ines Hellmann; Yuan Mang; Zhiping Gu; Peter Li; Francisco M De La Vega; andrew clark; Rasmus Nielsen
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.
Genome research 2008;18(7):1020-9.
2008: Adam R Boyko; Scott H Williamson; Amit R Indap; Jeremiah Degenhardt; Ryan D Hernandez; Kirk E Lohmueller; Mark D Adams; Steffen Schmidt; John J Sninsky; Shamil R Sunyaev; Thomas J White; Rasmus Nielsen; andrew clark; Carlos Bustamante
Assessing the evolutionary impact of amino acid mutations in the human genome.
PLoS genetics 2008;4(5):e1000083.
2008: Bert Gold; Tomas Kirchhoff; Stefan Stefanov; James Lautenberger; Agnes Viale; Judy E Garber; Eitan Friedman; steven narod; Adam B Olshen; Peter Gregersen; Kristi Kosarin; Adam Olsh; Julie Bergeron; Nathan Ellis; Robert J. Klein; andrew clark; Larry Norton; Michael Dean; Jeff Boyd; Kenneth Offit
Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4340-5.
2008: Patricia J Wittkopp; Belinda K Haerum; andrew clark
Regulatory changes underlying expression differences within and between Drosophila species.
Nature genetics 2008;40(3):346-50.
2008: Amanda M Larracuente; Timothy B Sackton; Anthony J Greenberg; Alex Wong; Nadia D Singh; David Sturgill; Yu Zhang; Brian Oliver; andrew clark
Evolution of protein-coding genes in Drosophila.
Trends in genetics : TIG 2008;24(3):114-23.
2008: Patricia J Wittkopp; Belinda K Haerum; andrew clark
Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster.
Genetics 2008;178(3):1831-5.
2008: Kirk E Lohmueller; Amit R Indap; Steffen Schmidt; Adam R Boyko; Ryan D Hernandez; Melissa J Hubisz; John J Sninsky; Thomas J White; Shamil Sunyaev; Rasmus Nielsen; andrew clark; Carlos Bustamante
Proportionally more deleterious genetic variation in European than in African populations.
Nature 2008;451(7181):994-7.
2008: Nadia D Singh; Amanda M Larracuente; andrew clark
Contrasting the efficacy of selection on the X and autosomes in Drosophila.
Molecular biology and evolution 2008;25(2):454-67.
2008: Xu Wang; Qi Sun; Sean D McGrath; Elaine R Mardis; Paul D Soloway; andrew clark
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain.
PloS one 2008;3(12):e3839.
2008: Kurt A McKean; Christopher P Yourth; Brian P Lazzaro; andrew clark
The evolutionary costs of immunological maintenance and deployment.
BMC evolutionary biology 2008;8():76.
2008: Adam B Olshen; Bert Gold; Kirk E Lohmueller; Jeffery Struewing; Jaya M Satagopan; Stefan A Stefanov; Eleazar Eskin; Tomas Kirchhoff; James A Lautenberger; Robert J. Klein; Eitan Friedman; Larry Norton; Nathan Ellis; Agnes Viale; Catherine S Lee; Patrick I Borgen; andrew clark; Kenneth Offit; Jeff Boyd
Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping.
BMC genetics 2008;9():14.
2008: Katherine S Pollard; david serre; Xu Wang; Heng Tao; Elin Grundberg; Thomas J Hudson; andrew clark; Kelly Frazer
A genome-wide approach to identifying novel-imprinted genes.
Human genetics 2008;122(6):625-34.
2007: Lisa A McGraw; Anthony C Fiumera; Meera Ramakrishnan; Swetha Madhavarapu; andrew clark; Mariana F Wolfner
Larval rearing environment affects several post-copulatory traits in Drosophila melanogaster.
Biology letters 2007;3(6):607-10.
2007: Timothy B Sackton; Brian P Lazzaro; Todd A Schlenke; Jay Evans; Dan Hultmark; andrew clark
Dynamic evolution of the innate immune system in Drosophila.
Nature genetics 2007;39(12):1461-8.
2007: Melanie A Huntley; andrew clark
Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species.
Molecular biology and evolution 2007;24(12):2598-609.
2007: Alexander Stark; Michael F Lin; Pouya Kheradpour; Jakob S Pedersen; Leopold Parts; Joseph W Carlson; Madeline A Crosby; Matthew D Rasmussen; Sushmita Roy; Ameya N Deoras; J Graham Ruby; Julius Brennecke; Emily Hodges; Angie S Hinrichs; Anat Caspi; Benedict Paten; Seung-Won Park; Mira V Han; Morgan L Maeder; Benjamin J Polansky; Bryanne E Robson; Stein Aerts; Jacques van Helden; Bassem Hassan; Donald G Gilbert; Deborah A Eastman; Michael Rice; Michael Weir; Matthew W Hahn; Yongkyu Park; Colin N Dewey; Lior Pachter; W James Kent; David Haussler; Eric C Lai; David P Bartel; Gregory J Hannon; Thomas C Kaufman; Michael B Eisen; andrew clark; Douglas Smith; Susan E Celniker; William M Gelbart; Manolis Kellis
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Nature 2007;450(7167):219-32.
2007: andrew clark; Michael B Eisen; Douglas R Smith; Casey M Bergman; Brian Oliver; Therese A Markow; Thomas C Kaufman; Manolis Kellis; William Gelbart; Venky N Iyer; Daniel A Pollard; Timothy B Sackton; Amanda M Larracuente; Nadia D Singh; Jose P Abad; Dawn N Abt; Boris Adryan; Montserrat Aguade; Hiroshi Akashi; Wyatt W Anderson; Charles F Aquadro; David H Ardell; Roman Arguello; Carlo G Artieri; Daniel A Barbash; Daniel Barker; Paolo Barsanti; Phil Batterham; Serafim Batzoglou; Dave Begun; Arjun Bhutkar; Enrico Blanco; Stephanie A Bosak; Robert K Bradley; Adrianne D Brand; Michael R Brent; Angela N Brooks; Randall H Brown; Roger K Butlin; Corrado Caggese; Brian R. Calvi; A Bernardo de Carvalho; Anat Caspi; Sergio Castrezana; Susan E Celniker; Jean L Chang; Charles Chapple; Sourav Chatterji; Asif Chinwalla; Alberto Civetta; Sandra W Clifton; Josep M Comeron; James C Costello; Jerry A Coyne; Jennifer Daub; Robert G David; Arthur L Delcher; Kim Delehaunty; Chuong B Do; Heather Ebling; Kevin Edwards; Thomas Eickbush; Jay Evans; Alan Filipski; Sven Findeiss; Eva Freyhult; Lucinda Fulton; Robert Fulton; Ana C L Garcia; Anastasia Gardiner; David A Garfield; Barry E Garvin; Greg Gibson; Donald G Gilbert; Sante Gnerre; Jennifer Godfrey; Robert Good; Valer Gotea; Brenton Gravely; Anthony J Greenberg; Sam Griffiths-Jones; Samuel Gross; Roderic Guigo; Erik A Gustafson; Wilfried Haerty; Matthew W Hahn; Daniel L Halligan; Aaron L Halpern; Gillian M Halter; Mira V Han; Andreas Heger; LaDeana Hillier; Angie S Hinrichs; Ian Holmes; Roger A Hoskins; Melissa J Hubisz; Dan Hultmark; Melanie A Huntley; David B Jaffe; Santosh Jagadeeshan; William R Jeck; Justin Johnson; Corbin D Jones; William C Jordan; Gary Karpen; Eiko Kataoka; Peter D Keightley; Pouya Kheradpour; Ewen F Kirkness; Leonardo B Koerich; Karsten Kristiansen; Dave Kudrna; Rob J Kulathinal; Sudhir Kumar; Roberta Kwok; Eric Lander; Charles H Langley; Richard Lapoint; Brian P Lazzaro; So-Jeong Lee; Lisa Levesque; Ruiqiang Li; Chiao-Feng Lin; Michael F Lin; Kerstin Lindblad-Toh; Ana Llopart; Manyuan Long; Lloyd Low; Elena Lozovsky; Jian Lu; Meizhong Luo; Carlos A Machado; Wojciech Makalowski; Mar Marzo; Muneo Matsuda; Luciano Matzkin; Bryant McAllister; Carolyn S McBride; Brendan McKernan; Kevin McKernan; Maria Mendez-Lago; Patrick Minx; Michael U Mollenhauer; Kristi Montooth; Steve Mount; Xu Mu; Eugene Myers; Barbara Negre; Stuart Newfeld; Rasmus Nielsen; Mohamed A F Noor; Patrick O'Grady; Lior Pachter; Montserrat Papaceit; Matthew J Parisi; Michael Parisi; Leopold Parts; Jakob S Pedersen; Graziano Pesole; Adam M Phillippy; Chris P Ponting; Mihai Pop; Damiano Porcelli; Jeffrey R Powell; Sonja J Prohaska; Kim Pruitt; Marta Puig; Hadi Quesneville; Kristipati Ravi Ram; David Rand; Matthew D Rasmussen; Laura K Reed; Robert Reenan; Amy Reily; Karin A Remington; Tania T Rieger; Michael G Ritchie; Charles Robin; Yu-Hui Rogers; Claudia Rohde; Julio Rozas; Marc J Rubenfield; Alfredo Ruiz; Susan Russo; Steven L Salzberg; Alejandro Sanchez-Gracia; David J Saranga; Hajime Sato; Stephen W Schaeffer; Michael C Schatz; Todd Schlenke; Russell Schwartz; Carmen Segarra; Rama S Singh; Laura K Sirot; Marina Sirota; Nicholas B Sisneros; Chris D Smith; Temple F Smith; John Spieth; Deborah E Stage; Alexander Stark; Wolfgang Stephan; Robert L Strausberg; Sebastian Strempel; David Sturgill; Granger Sutton; Granger G Sutton; Wei Tao; Sarah Teichmann; Yoshiko N Tobari; Yoshihiko Tomimura; Jason M Tsolas; Vera L S Valente; Eli Venter; J Craig Venter; Saverio Vicario; Filipe G Vieira; Albert J Vilella; Alfredo Villasante; Brian Walenz; Jun Wang; Marvin Wasserman; Thomas Watts; Derek Wilson; Richard K Wilson; Rod A Wing; Mariana F Wolfner; Alex Wong; Gane Ka-Shu Wong; Chung-I Wu; Gabriel Wu; Daisuke Yamamoto; Hsiao-Pei Yang; Shiaw-Pyng Yang; James A. Yorke; Kiyohito Yoshida; Evgeny Zdobnov; Peili Zhang; Yu Zhang; Aleksey V Zimin; Jennifer Baldwin; Amr Abdouelleil; Jamal Abdulkadir; Adal Abebe; Brikti Abera; Justin Abreu; St Christophe Acer; Lynne Aftuck; Allen Alexander; Peter An; Erica Anderson; Scott Anderson; Harindra Arachi; Marc Azer; Pasang Bachantsang; Andrew Barry; Tashi Bayul; Aaron Berlin; Daniel Bessette; Toby Bloom; Jason Blye; Leonid Boguslavskiy; Claude Bonnet; Boris Boukhgalter; Imane Bourzgui; Adam Brown; Patrick Cahill; Sheridon Channer; Yama Cheshatsang; Lisa Chuda; Mieke Citroen; Alville Collymore; Patrick Cooke; Maura Costello; Katie D'Aco; Riza Daza; Georgius De Haan; Stuart DeGray; Christina DeMaso; Norbu Dhargay; Kimberly Dooley; Erin Dooley; Missole Doricent; Passang Dorje; Kunsang Dorjee; Alan Dupes; Richard Elong; Jill Falk; Abderrahim Farina; Susan Faro; Diallo Ferguson; Sheila Fisher; Chelsea D Foley; Alicia Franke; Dennis Friedrich; Loryn Gadbois; Gary Gearin; Christina R Gearin; Georgia Giannoukos; Tina Goode; Joseph Graham; Edward Grandbois; Sharleen Grewal; Kunsang Gyaltsen; Nabil Hafez; Birhane Hagos; Jennifer Hall; Charlotte Henson; Andrew Hollinger; Tracey Honan; Monika D Huard; Leanne Hughes; Brian Hurhula; M Erii Husby; Asha Kamat; Ben Kanga; Seva Kashin; Dmitry Khazanovich; Peter Kisner; Krista Lance; Marcia Lara; William Lee; Niall Lennon; Frances Letendre; Rosie LeVine; Alex Lipovsky; Xiaohong Liu; Jinlei Liu; Shangtao Liu; Tashi Lokyitsang; Yeshi Lokyitsang; Rakela Lubonja; Annie Lui; Pen MacDonald; Vasilia Magnisalis; Kebede Maru; Charles Matthews; William McCusker; Susan McDonough; Teena Mehta; James Meldrim; Louis Meneus; Oana Mihai; Atanas Mihalev; Tanya Mihova; Rachel Mittelman; Valentine Mlenga; Anna Montmayeur; Leonidas Mulrain; Adam Navidi; Jerome Naylor; Tamrat Negash; Thu Nguyen; Nga Nguyen; Robert Nicol; Choe Norbu; Nyima Norbu; Nathaniel Novod; Barry O'Neill; Sahal Osman; Eva Markiewicz; Otero L Oyono; Christopher Patti; Pema Phunkhang; Fritz Pierre; Margaret Priest; Sujaa Raghuraman; Filip Rege; Rebecca Reyes; Cecil Rise; Peter Rogov; Keenan Ross; Elizabeth Ryan; Sampath Settipalli; Terry Shea; Ngawang Sherpa; Lu Shi; Diana Shih; Todd Sparrow; Jessica Spaulding; John Stalker; Nicole Stange-Thomann; Sharon Stavropoulos; Catherine Stone; Christopher Strader; Senait Tesfaye; Talene Thomson; Yama Thoulutsang; Dawa Thoulutsang; Kerri Topham; Ira Topping; Tsamla Tsamla; Helen Vassiliev; Andy Vo; Tsering Wangchuk; Tsering Wangdi; Michael Weiand; Jane Wilkinson; Adam Wilson; Shailendra Yadav; Geneva Young; Qing Yu; Lisa Zembek; Danni Zhong; Andrew Zimmer; Zac Zwirko; David B Jaffe; Pablo Alvarez; Will Brockman; Jonathan Butler; CheeWhye Chin; Sante Gnerre; Manfred Grabherr; Michael Kleber; Evan Mauceli; Iain MacCallum
Evolution of genes and genomes on the Drosophila phylogeny.
Nature 2007;450(7167):203-18.
2007: Rasmus Nielsen; Ines Hellmann; Melissa J Hubisz; Carlos Bustamante; andrew clark
Recent and ongoing selection in the human genome.
Nature reviews. Genetics 2007;8(11):857-68.
2007: Aida M Andrés; andrew clark; Lawrence Shimmin; Eric Boerwinkle; Charles F Sing; James E Hixson
Understanding the accuracy of statistical haplotype inference with sequence data of known phase.
Genetic epidemiology 2007;31(7):659-71.
2007: Todd A Schlenke; Jorge Morales; Shubha Govind; andrew clark
Contrasting infection strategies in generalist and specialist wasp parasitoids of Drosophila melanogaster.
PLoS pathogens 2007;3(10):1486-501.
2007: andrew clark; Jian Li
Conjuring SNPs to detect associations.
Nature genetics 2007;39(7):815-6.
2007: Miltiadis Kininis; Benjamin S Chen; Adam G Diehl; Gary D Isaacs; Tong Zhang; Adam Siepel; andrew clark; W Lee Kraus
Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.
Molecular and cellular biology 2007;27(14):5090-104.
2007: Scott H Williamson; Melissa J Hubisz; andrew clark; Bret Payseur; Carlos Bustamante; Rasmus Nielsen
Localizing recent adaptive evolution in the human genome.
PLoS genetics 2007;3(6):e90.
2007: Anthony C Fiumera; Bethany L Dumont; andrew clark
Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster.
Genetics 2007;176(2):1245-60.
2007: Richard A Gibbs; Jeffrey Rogers; Michael G Katze; Roger E Bumgarner; George Weinstock; Elaine R Mardis; Karin A Remington; Robert L Strausberg; J Craig Venter; Richard K Wilson; Mark A Batzer; Carlos Bustamante; Evan E Eichler; Matthew W Hahn; Ross C Hardison; Kateryna D Makova; Webb Miller; Aleksandar Milosavljevic; Robert E Palermo; Adam Siepel; James M Sikela; Tony Attaway; Stephanie Bell; Kelly E Bernard; Christian J Buhay; Mimi N Chandrabose; Marvin Dao; Clay Davis; Kimberly D Delehaunty; Yan Ding; Huyen H Dinh; Shannon Dugan-Rocha; Lucinda A Fulton; Ramatu Ayiesha Gabisi; Toni T Garner; Jennifer Godfrey; Alicia C Hawes; Judith Hernandez; Sandra Hines; Michael Holder; Jennifer Hume; Shalini N Jhangiani; Vandita Joshi; Ziad Mohid Khan; Ewen F Kirkness; Andrew Cree; R Gerald Fowler; Sandra Lee; Lora R Lewis; Zhangwan Li; Yih-Shin Liu; Stephanie M Moore; Donna Muzny; Lynne V Nazareth; Dinh Ngoc Ngo; Geoffrey O Okwuonu; Grace Pai; David Parker; Heidie A Paul; Cynthia Pfannkoch; Craig S Pohl; Yu-Hui Rogers; San Juana Ruiz; Aniko Sabo; Jireh Santibanez; Brian W Schneider; Scott M Smith; Erica Sodergren; Amanda F Svatek; Teresa R Utterback; Selina Vattathil; Wesley Warren; Courtney Sherell White; Asif T Chinwalla; Yucheng Feng; Aaron L Halpern; Ladeana W Hillier; Xiaoqiu Huang; Pat Minx; Joanne O Nelson; Kymberlie H Pepin; Xiang Qin; Granger G Sutton; Eli Venter; Brian P Walenz; John W Wallis; Kim C Worley; Shiaw-Pyng Yang; Steven M Jones; Marco A Marra; Mariano Rocchi; Jacqueline E Schein; Robert Baertsch; Laura Clarke; Miklós Csürös; Jarret Glasscock; Ronald Harris; Paul Havlak; Andrew R Jackson; Huaiyang Jiang; Yue Liu; David N Messina; Yufeng Shen; Henry Xing-Zhi Song; Todd Wylie; Lan Zhang; Ewan Birney; Kyudong Han; Miriam K Konkel; Jungnam Lee; Arian F A Smit; Brygg Ullmer; Hui Wang; Jinchuan Xing; Richard Burhans; Ze Cheng; John E Karro; Jian Ma; Brian Raney; Xinwei She; Michael J Cox; Jeffery P Demuth; Laura J Dumas; Sang-Gook Han; Janet Hopkins; Anis Karimpour-Fard; Young H Kim; Jonathan R Pollack; Tomas Vinar; Charles Addo-Quaye; Jeremiah Degenhardt; Alexandra Denby; Melissa J Hubisz; Amit Indap; Carolin Kosiol; Bruce T Lahn; Heather A Lawson; Alison Marklein; Rasmus Nielsen; Eric J Vallender; andrew clark; Betsy M Ferguson; Ryan D Hernandez; Kashif Hirani; Hildegard Kehrer-Sawatzki; Jessica Kolb; Shobha Patil; Ling-Ling Pu; Yanru Ren; David Glenn Smith; David A Wheeler; Ian Schenck; Edward V Ball; Rui Chen; David N Cooper; Belinda Giardine; Fan Hsu; W James Kent; Arthur Lesk; David L Nelson; William E O'brien; Kay Prüfer; Peter D Stenson; James C Wallace; Hui Ke; Xiao-Ming Liu; Peng Wang; Andy Peng Xiang; Fan Yang; Galt P Barber; David Haussler; Donna Karolchik; Andy D Kern; Robert M Kuhn; Kayla E Smith; Ann S Zwieg
Evolutionary and biomedical insights from the rhesus macaque genome.
Science (New York, N.Y.) 2007;316(5822):222-34.
2007: Frank Grønlund Jørgensen; Mikkel H Schierup; andrew clark
Heterogeneity in regional GC content and differential usage of codons and amino acids in GC-poor and GC-rich regions of the genome of Apis mellifera.
Molecular biology and evolution 2007;24(2):611-9.
2007: Xin Ma; Yuhua Liu; Brian B Gowen; Edward Graviss; andrew clark; James M Musser
Full-exon resequencing reveals toll-like receptor variants contribute to human susceptibility to tuberculosis disease.
PloS one 2007;2(12):e1318.
2007: Raazesh Sainudiin; andrew clark; Richard Durrett
Simple models of genomic variation in human SNP density.
BMC genomics 2007;8():146.
2006: Brian P Lazzaro; Timothy B Sackton; andrew clark
Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria.
Genetics 2006;174(3):1539-54.
2006: Charles W Whitfield; Susanta K Behura; Stewart H Berlocher; andrew clark; J Spencer Johnston; Walter S Sheppard; Deborah R Smith; Andrew V Suarez; Daniel Weaver; Neil D Tsutsui
Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera.
Science (New York, N.Y.) 2006;314(5799):642-5.
2006: Kristi L Montooth; Kyle T Siebenthall; andrew clark
Membrane lipid physiology and toxin catabolism underlie ethanol and acetic acid tolerance in Drosophila melanogaster.
The Journal of experimental biology 2006;209(Pt 19):3837-50.
2006: Hamish G Spencer; andrew clark
A chip off the old block: a model for the evolution of genomic imprinting via selection for parental similarity.
Genetics 2006;174(2):931-5.
2006: Bret Payseur; andrew clark; James E Hixson; Eric Boerwinkle; Charles F Sing
Contrasting multi-site genotypic distributions among discordant quantitative phenotypes: the APOA1/C3/A4/A5 gene cluster and cardiovascular disease risk factors.
Genetic epidemiology 2006;30(6):508-18.
2006: C M Brown; Thomas J Rea; Sara C Hamon; James E Hixson; Eric Boerwinkle; andrew clark; Charles F Sing
The contribution of individual and pairwise combinations of SNPs in the APOA1 and APOC3 genes to interindividual HDL-C variability.
Journal of molecular medicine (Berlin, Germany) 2006;84(7):561-72.
2006: Patricia J Wittkopp; Belinda K Haerum; andrew clark
Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting.
Genetics 2006;173(3):1817-21.
2006: andrew clark
Genomics of the evolutionary process.
Trends in ecology & evolution 2006;21(6):316-21.
2006: Anthony C Fiumera; Bethany L Dumont; andrew clark
Natural variation in male-induced 'cost-of-mating' and allele-specific association with male reproductive genes in Drosophila melanogaster.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1466):355-61.
2006: Gary M Wilson; Stephane Flibotte; Perseus I Missirlis; Marco A Marra; Steven J M Jones; Kevin Thornton; andrew clark; Robert A Holt
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla.
Genome research 2006;16(2):173-81.
2006: Sara C Hamon; Sharon L R Kardia; Eric Boerwinkle; Kiang Liu; Kathy Klos; andrew clark; Charles F Sing
Evidence for consistent intragenic and intergenic interactions between SNP effects in the APOA1/C3/A4/A5 gene cluster.
Human heredity 2006;61(2):87-96.
2005: Barbara E Stranger; Matthew Forrest; andrew clark; Mark J Minichiello; Samuel Deutsch; Robert Lyle; Sarah Hunt; Brenda Kahl; Stylianos E Antonarakis; Simon Tavaré; Panos Deloukas; Emmanouil T Dermitzakis
Genome-wide associations of gene expression variation in humans.
PLoS genetics 2005;1(6):e78.
2005: Christian R Landry; Patricia J Wittkopp; Clifford H Taubes; José M Ranz; andrew clark; Daniel L Hartl
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila.
Genetics 2005;171(4):1813-22.
2005: Rasmus Nielsen; Scott Williamson; Yuseob Kim; Melissa J Hubisz; andrew clark; Carlos Bustamante
Genomic scans for selective sweeps using SNP data.
Genome research 2005;15(11):1566-75.
2005: andrew clark; Melissa J Hubisz; Carlos Bustamante; Scott H Williamson; Rasmus Nielsen
Ascertainment bias in studies of human genome-wide polymorphism.
Genome research 2005;15(11):1496-502.
2005: andrew clark; Eric Boerwinkle; James E Hixson; Charles F Sing
Determinants of the success of whole-genome association testing.
Genome research 2005;15(11):1463-7.
2005: Carlos Bustamante; Adi Fledel-Alon; Scott Williamson; Rasmus Nielsen; Melissa Todd Hubisz; Stephen Glanowski; David M Tanenbaum; Thomas J White; John J Sninsky; Ryan D Hernandez; Daniel Civello; Mark D Adams; Michele Cargill; andrew clark
Natural selection on protein-coding genes in the human genome.
Nature 2005;437(7062):1153-7.
2005: Jacob L Mueller; Kristipati Ravi Ram; Lisa A McGraw; Margaret C Bloch Qazi; E D Siggia; andrew clark; Charles F Aquadro; Mariana F Wolfner
Cross-species comparison of Drosophila male accessory gland protein genes.
Genetics 2005;171(1):131-43.
2005: andrew clark
Hot spots unglued.
Nature genetics 2005;37(6):563-4.
2005: Rasmus Nielsen; Carlos Bustamante; andrew clark; Stephen Glanowski; Timothy B Sackton; Melissa J Hubisz; Adi Fledel-Alon; David M Tanenbaum; Daniel Civello; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
A scan for positively selected genes in the genomes of humans and chimpanzees.
PLoS biology 2005;3(6):e170.
2005: J Ohashi; andrew clark
Application of the stepwise focusing method to optimize the cost-effectiveness of genome-wide association studies with limited research budgets for genotyping and phenotyping.
Annals of human genetics 2005;69(Pt 3):323-8.
2005: Francisco M De La Vega; Hadar Isaac; ANDREW COLLINS; Charles R Scafe; Bjarni V Halldórsson; Xiaoping Su; Ross Lippert; Yu Wang; Marion Laig-Webster; Ryan T Koehler; Janet S Ziegle; Lewis T Wogan; Junko F Stevens; Kyle M Leinen; Sheri J Olson; Karl J Guegler; Xiaoqing You; Lily H Xu; Heinz G Hemken; Francis Kalush; Mitsuo Itakura; Yi Zheng; Guy de Thé; Stephen J O'Brien; andrew clark; Sorin Istrail; Michael W Hunkapiller; Eugene G Spier; Dennis A Gilbert
The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.
Genome research 2005;15(4):454-62.
2005: Min Zhang; Kristi L Montooth; Martin T Wells; andrew clark; Dabao Zhang
Mapping multiple Quantitative Trait Loci by Bayesian classification.
Genetics 2005;169(4):2305-18.
2005: Kathy Klos; Sara C Hamon; andrew clark; Eric Boerwinkle; Kiang Liu; Charles F Sing
APOA5 polymorphisms influence plasma triglycerides in young, healthy African Americans and whites of the CARDIA Study.
Journal of lipid research 2005;46(3):564-71.
2005: David Altshuler; andrew clark
Genetics. Harvesting medical information from the human family tree.
Science (New York, N.Y.) 2005;307(5712):1052-3.
2005: Antonio Carvalho; andrew clark
Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y.
Science (New York, N.Y.) 2005;307(5706):108-10.
2005: Andrei Rodin; Thomas H Mosley; andrew clark; Charles F Sing; Eric Boerwinkle
Mining genetic epidemiology data with Bayesian networks application to APOE gene variation and plasma lipid levels.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(1):1-11.
2005: Stephen Richards; Yue Liu; Brian R Bettencourt; Pavel Hradecky; Stan Letovsky; Rasmus Nielsen; Kevin Thornton; Melissa J Hubisz; Rui Chen; Richard P Meisel; Olivier Couronne; Sujun Hua; Mark A Smith; Peili Zhang; Jing Liu; Harmen J Bussemaker; Marinus F van Batenburg; Sally L Howells; Steven E Scherer; Erica Sodergren; Beverly B Matthews; Madeline A Crosby; Andrew J Schroeder; Daniel Ortiz-Barrientos; Catharine M Rives; Michael L Metzker; Donna M Muzny; Graham Scott; David Steffen; David A Wheeler; Kim C Worley; Paul Havlak; K James Durbin; Amy Egan; Rachel Gill; Jennifer Hume; Margaret B Morgan; George Miner; Cerissa Hamilton; Yanmei Huang; Lenée Waldron; Daniel Verduzco; Kerstin P Clerc-Blankenburg; Inna Dubchak; Mohamed A F Noor; Wyatt Anderson; Kevin P White; andrew clark; Stephen W Schaeffer; William Gelbart; George M Weinstock; Richard A Gibbs
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Genome research 2005;15(1):1-18.
2005: Jun Ohashi; Izumi Naka; Jintana Patarapotikul; Hathairad Hananantachai; Gary Brittenham; Sornchai Looareesuwan; andrew clark; Katsushi Tokunaga
Strong linkage disequilibrium of a HbE variant with the (AT)9(T)5 repeat in the BP1 binding site upstream of the beta-globin gene in the Thai population.
Journal of human genetics 2005;50(1):7-11.
2005: Anthony C Fiumera; Bethany L Dumont; andrew clark
Sperm competitive ability in Drosophila melanogaster associated with variation in male reproductive proteins.
Genetics 2005;169(1):243-57.
2004: Bert Gold; Francis Kalush; Julie Bergeron; Kevin Scott; Nandita Mitra; Kelly Wilson; Nathan Ellis; Helen Huang; Michael Chen; Ross Lippert; Bjarni V Halldorsson; Beth Woodworth; Thomas White; andrew clark; Fritz F Parl; Samuel Broder; Michael Dean; Kenneth Offit
Estrogen receptor genotypes and haplotypes associated with breast cancer risk.
Cancer research 2004;64(24):8891-900.
2004: Rasmus Nielsen; Melissa J Hubisz; andrew clark
Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.
Genetics 2004;168(4):2373-82.
2004: andrew clark
The role of haplotypes in candidate gene studies.
Genetic epidemiology 2004;27(4):321-33.
2004: Sara C Hamon; J H Stengard; andrew clark; V Salomaa; Eric Boerwinkle; Charles F Sing
Evidence for non-additive influence of single nucleotide polymorphisms within the apolipoprotein E gene.
Annals of human genetics 2004;68(Pt 6):521-35.
2004: Lisa A McGraw; Greg Gibson; andrew clark; Mariana F Wolfner
Genes regulated by mating, sperm, or seminal proteins in mated female Drosophila melanogaster.
Current biology : CB 2004;14(16):1509-14.
2004: Bjarni V Halldórsson; Vineet Bafna; Ross Lippert; Russell Schwartz; Francisco M De La Vega; andrew clark; Sorin Istrail
Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies.
Genome research 2004;14(8):1633-40.
2004: Patricia J Wittkopp; Belinda K Haerum; andrew clark
Evolutionary changes in cis and trans gene regulation.
Nature 2004;430(6995):85-8.
2004: Jun Ohashi; Izumi Naka; Jintana Patarapotikul; Hathairad Hananantachai; Gary Brittenham; Sornchai Looareesuwan; andrew clark; Katsushi Tokunaga
Extended linkage disequilibrium surrounding the hemoglobin E variant due to malarial selection.
American journal of human genetics 2004;74(6):1198-208.
2004: Stephanie M Fullerton; Anne V Buchanan; Vibhor Sonpar; Scott L Taylor; Joshua D Smith; Christopher S Carlson; Veikko Salomaa; Jari H Stengård; Eric Boerwinkle; andrew clark; Deborah A Nickerson; Kenneth M Weiss
The effects of scale: variation in the APOA1/C3/A4/A5 gene cluster.
Human genetics 2004;115(1):36-56.
2004: Brian P Lazzaro; Sceurman Swenor Bonnielin; andrew clark
Genetic basis of natural variation in D. melanogaster antibacterial immunity.
Science (New York, N.Y.) 2004;303(5665):1873-6.
2004: andrew clark
The 6th international meeting on single nucleotide polymorphism and complex genome analysis. November 20-23, 2003, Chantilly, VA, USA.
Pharmacogenomics 2004;5(2):153-6.
2004: J Bundgaard; J S F Barker; Jane Frydenberg; andrew clark
Remating and sperm displacement in a natural population of Drosophila buzzatii inferred from mother-offspring analysis of microsatellite loci.
Journal of evolutionary biology 2004;17(2):376-81.
2004: Sorin Istrail; Granger G Sutton; Liliana Florea; Aaron L Halpern; Clark M Mobarry; Ross Lippert; Brian Walenz; Hagit Shatkay; Ian Dew; Jason R Miller; Michael J Flanigan; Nathan J Edwards; Randall Bolanos; Daniel Fasulo; Bjarni V Halldorsson; Sridhar Hannenhalli; Russell Turner; Shibu Yooseph; Fu Lu; Deborah R Nusskern; Bixiong Chris Shue; Xiangqun Holly Zheng; Fei Zhong; Arthur L Delcher; Daniel H Huson; Saul A Kravitz; Laurent Mouchard; Knut Reinert; Karin A Remington; andrew clark; Michael S Waterman; Evan E Eichler; Mark D Adams; Michael W Hunkapiller; Eugene W Myers; J Craig Venter
Whole-genome shotgun assembly and comparison of human genome assemblies.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(7):1916-21.
2004: Thanat Chookajorn; Aardra Kachroo; Daniel R Ripoll; andrew clark; June B Nasrallah
Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(4):911-7.
2004: Hamish G Spencer; Marcus W Feldman; andrew clark; Anton E Weisstein
The effect of genetic conflict on genomic imprinting and modification of expression at a sex-linked locus.
Genetics 2004;166(1):565-79.
2003: andrew clark; Stephen Glanowski; Rasmus Nielsen; Paul D Thomas; Anish Kejariwal; Melissa A Todd; David M Tanenbaum; Daniel Civello; Fu Lu; Brian Murphy; Steve Ferriera; Gary Wang; Xianqgun Zheng; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
Science (New York, N.Y.) 2003;302(5652):1960-3.
2003: Jinghui Zhang; William L Rowe; andrew clark; Kenneth H Buetow
Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations.
American journal of human genetics 2003;73(5):1073-81.
2003: Kristi L Montooth; James H Marden; andrew clark
Mapping determinants of variation in energy metabolism, respiration and flight in Drosophila.
Genetics 2003;165(2):623-35.
2003: Deanna L Kroetz; Christiane Pauli-Magnus; Laura M Hodges; Conrad C Huang; Michiko Kawamoto; Susan J Johns; Doug Stryke; Thomas E Ferrin; Joseph DeYoung; Travis Taylor; Elaine J Carlson; Ira Herskowitz; Kathleen M Giacomini; andrew clark
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene.
Pharmacogenetics 2003;13(8):481-94.
2003: andrew clark; Rasmus Nielsen; James Signorovitch; Tara C Matise; Stephen Glanowski; Jeremy Heil; Emily S Winn-Deen; Arthur L Holden; Eric Lai
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome.
American journal of human genetics 2003;73(2):285-300.
2003: Tara C Matise; Ravi Sachidanandam; andrew clark; Leonid Kruglyak; Ellen M Wijsman; Jerzy Kakol; Steven Buyske; Buena Chui; Patrick Cohen; Claudia de Toma; Margaret Ehm; Stephen Glanowski; Chunsheng He; Jeremy Heil; Kyriacos Markianos; Ivy McMullen; Margaret Pericak-Vance; Arkadiy Silbergleit; Lincoln Stein; Michael Wagner; Alexander F Wilson; Jeffrey D Winick; Emily S Winn-Deen; Carl T Yamashiro; Howard M Cann; Eric Lai; Arthur L Holden
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set.
American journal of human genetics 2003;73(2):271-84.
2003: andrew clark
Finding genes underlying risk of complex disease by linkage disequilibrium mapping.
Current opinion in genetics & development 2003;13(3):296-302.
2003: Brian P Lazzaro; andrew clark
Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster.
Molecular biology and evolution 2003;20(6):914-23.
2003: Maya K Leabman; Conrad C Huang; Joseph DeYoung; Elaine J Carlson; Travis R Taylor; Melanie de la Cruz; Susan J Johns; Doug Stryke; Michiko Kawamoto; Thomas J Urban; Deanna L Kroetz; Thomas E Ferrin; andrew clark; Neil Risch; Ira Herskowitz; Kathleen M Giacomini
Natural variation in human membrane transporter genes reveals evolutionary and functional constraints.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(10):5896-901.
2003: Emmanouil T Dermitzakis; Casey M Bergman; andrew clark
Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
Molecular biology and evolution 2003;20(5):703-14.
2003: andrew clark
A slippery boundary.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):4971-2.
2003: Antonio Carvalho; Maria Dulcetti Vibranovski; Joseph W Carlson; Susan E Celniker; Roger A Hoskins; Gerald M Rubin; Granger Sutton; Mark D Adams; Eugene W Myers; andrew clark
Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?
Genetica 2003;117(2-3):227-37.
2003: Beatrix Jones; andrew clark
Bayesian sperm competition estimates.
Genetics 2003;163(3):1193-9.
2003: Dan Mishmar; Eduardo Ruiz-Pesini; Pawel Golik; Vincent Macaulay; andrew clark; Seyed Hosseini; Martin Brandon; Kirk Easley; Estella Chen; Michael D Brown; Rem I Sukernik; Antonel Olckers; Douglas C Wallace
Natural selection shaped regional mtDNA variation in humans.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(1):171-6.
2003: andrew clark; Stephen Glanowski; Rasmus Nielsen; P Thomas; Anish Kejariwal; M J Todd; David M Tanenbaum; Daniel Civello; F Lu; B Murphy; Steve Ferriera; Gaofeng Wang; X Zheng; Thomas J White; John J Sninsky; Mark D Adams; Michele Cargill
Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments.
Cold Spring Harbor symposia on quantitative biology 2003;68():471-7.
2003: Russell Schwartz; Bjarni V Halldórsson; Vineet Bafna; andrew clark; Sorin Istrail
Robustness of inference of haplotype block structure.
Journal of computational biology : a journal of computational molecular cell biology 2003;10(1):13-9.
2002: Robert A Holt; G. SUBRAMANIAN; Aaron Halpern; Granger G Sutton; Rosane Charlab; Deborah R Nusskern; Patrick Wincker; andrew clark; José M C Ribeiro; Ron Wides; Steven L Salzberg; Brendan Loftus; Mark Yandell; William H Majoros; Douglas B Rusch; Zhongwu Lai; Cheryl L Kraft; Josep F Abril; Veronique Anthouard; Peter Arensburger; Peter W Atkinson; Holly Baden; Veronique de Berardinis; Danita Baldwin; Vladimir Benes; Jim Biedler; Claudia Blass; Randall Bolanos; Didier Boscus; Mary Barnstead; Shuang Cai; Angela Center; Kabir Chaturverdi; George Christophides; Mathew A Chrystal; Michele Clamp; Anibal Cravchik; Val Curwen; Ali Dana; Art Delcher; Ian Dew; Cheryl A Evans; Michael Flanigan; Anne Grundschober-Freimoser; Lisa Friedli; Zhiping Gu; Ping Guan; Roderic Guigo; Maureen E Hillenmeyer; Susanne L Hladun; James R Hogan; Young S Hong; Jeffrey Hoover; Olivier Jaillon; Zhaoxi Ke; Chinnappa Kodira; Elena Kokoza; Anastasios Koutsos; Ivica Letunic; Alex Levitsky; Yong Liang; Jhy-Jhu Lin; Neil F Lobo; John R Lopez; Joel A Malek; Tina C McIntosh; Stephan Meister; Jason Miller; Clark Mobarry; Emmanuel Mongin; Sean D Murphy; David A O'Brochta; Cynthia Pfannkoch; Rong Qi; Megan A Regier; Karin Remington; Hongguang Shao; Maria V Sharakhova; Cynthia D Sitter; Jyoti Shetty; Thomas J Smith; Renee Strong; Jingtao Sun; Dana Thomasova; Lucas Q Ton; Pantelis Topalis; Zhijian Tu; Maria F Unger; Brian Walenz; Aihui Wang; Jian Wang; Mei Wang; Xuelan Wang; Kerry J Woodford; Jennifer Wortman; Martin Wu; Alison Yao; Evgeny M Zdobnov; Hongyu Zhang; Qi Zhao; Shaying Zhao; Shiaoping C Zhu; Igor Zhimulev; Mario Coluzzi; Alessandra della Torre; Charles W Roth; Christos Louis; Francis Kalush; Richard J Mural; Eugene W Myers; Mark D Adams; Hamilton O Smith; Samuel Broder; Malcolm J Gardner; Claire M Fraser-Liggett; Ewan Birney; Peer Bork; Paul T Brey; J Craig Venter; Jean Weissenbach; Fotis C Kafatos; Frank H Collins; Stephen L Hoffman
The genome sequence of the malaria mosquito Anopheles gambiae.
Science (New York, N.Y.) 2002;298(5591):129-49.
2002: Brian P Lazzaro; Sceurman Swenor Bonnielin; Susan L Carney; andrew clark
fRFLP and fAFLP: medium-throughput genotyping by fluorescently post-labeling restriction digestion.
BioTechniques 2002;33(3):539-40, 542, 545-6.
2002: Jari H Stengård; andrew clark; Kenneth M Weiss; Sharon L R Kardia; Deborah A Nickerson; Veikko Salomaa; Christian Ehnholm; Eric Boerwinkle; Charles F Sing
Contributions of 18 additional DNA sequence variations in the gene encoding apolipoprotein E to explaining variation in quantitative measures of lipid metabolism.
American journal of human genetics 2002;71(3):501-17.
2002: andrew clark
Population genetics: malaria variorum.
Nature 2002;418(6895):283-5.
2002: Maya K Leabman; Conrad C Huang; Michiko Kawamoto; Susan J Johns; Doug Stryke; Thomas E Ferrin; Joseph DeYoung; Travis Taylor; andrew clark; Ira Herskowitz; Kathleen M Giacomini
Polymorphisms in a human kidney xenobiotic transporter, OCT2, exhibit altered function.
Pharmacogenetics 2002;12(5):395-405.
2002: Stephanie M Fullerton; andrew clark; Kenneth M Weiss; Scott L Taylor; Jari H Stengård; Veikko Salomaa; Eric Boerwinkle; Deborah A Nickerson
Sequence polymorphism at the human apolipoprotein AII gene ( APOA2): unexpected deficit of variation in an African-American sample.
Human genetics 2002;111(1):75-87.
2002: Emmanouil T Dermitzakis; andrew clark
Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.
Molecular biology and evolution 2002;19(7):1114-21.
2002: Alberto Civetta; Heidi M Waldrip-Dail; andrew clark
An introgression approach to mapping differences in mating success and sperm competitive ability in Drosophila simulans and D. sechellia.
Genetical research 2002;79(1):65-74.
2002: andrew clark
Sperm competition and the maintenance of polymorphism.
Heredity 2002;88(2):148-53.
2002: Kenneth M Weiss; andrew clark
Linkage disequilibrium and the mapping of complex human traits.
Trends in genetics : TIG 2002;18(1):19-24.
2001: Antonio Carvalho; B A Dobo; Maria Dulcetti Vibranovski; andrew clark
Identification of five new genes on the Y chromosome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(23):13225-30.
2001: S H Wei; andrew clark; Michael Syvanen
Identification and cloning of a key insecticide-metabolizing glutathione S-transferase (MdGST-6A) from a hyper insecticide-resistant strain of the housefly Musca domestica.
Insect biochemistry and molecular biology 2001;31(12):1145-53.
2001: Brian P Lazzaro; andrew clark
Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster.
Genetics 2001;159(2):659-71.
2001: David M Rand; andrew clark; LM Kann
Sexually antagonistic cytonuclear fitness interactions in Drosophila melanogaster.
Genetics 2001;159(1):173-87.
2001: andrew clark
The search for meaning in noncoding DNA.
Genome research 2001;11(8):1319-20.
2001: Lakshman Subrahmanyan; Michael A Eberle; andrew clark; Leonid Kruglyak; Deborah A Nickerson
Sequence variation and linkage disequilibrium in the human T-cell receptor beta (TCRB) locus.
American journal of human genetics 2001;69(2):381-95.
2001: Sarah A Tishkoff; R Varkonyi; N Cahinhinan; S Abbes; George Argyropoulos; Giovanni Destro-Bisol; Anthi Drousiotou; B Dangerfield; Gérard Lefranc; Jacques Loiselet; Anna Piro; M Stoneking; Antonio Tagarelli; Giuseppe Tagarelli; Elias H Touma; scott williams; andrew clark
Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance.
Science (New York, N.Y.) 2001;293(5529):455-62.
2001: Willie J Swanson; andrew clark; H M Waldrip-Dail; Mariana F Wolfner; Charles F Aquadro
Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(13):7375-9.
2001: S M Fullerton; A Bernardo Carvalho; andrew clark
Local rates of recombination are positively correlated with GC content in the human genome.
Molecular biology and evolution 2001;18(6):1139-42.
2001: Emmanouil T Dermitzakis; andrew clark
Differential selection after duplication in mammalian developmental genes.
Molecular biology and evolution 2001;18(4):557-62.
2001: J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; Hamilton O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; Jennifer Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G. SUBRAMANIAN; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; andrew clark; J Nadeau; Victor A McKusick; N Zinder; Arnold J Levine; Richard J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; Steven L Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; Shaying Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; Damon Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; Edward Suh; R Thomas; N N Tint; S Tse; C Vech; Gaofeng Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; Josep F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
The sequence of the human genome.
Science (New York, N.Y.) 2001;291(5507):1304-51.
2000: David J Begun; Penn Whitley; B L Todd; H M Waldrip-Dail; andrew clark
Molecular population genetics of male accessory gland proteins in Drosophila.
Genetics 2000;156(4):1879-88.
2000: Alberto Civetta; andrew clark
Correlated effects of sperm competition and postmating female mortality.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13162-5.
2000: Antonio Carvalho; Brian P Lazzaro; andrew clark
Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13239-44.
2000: Deborah A Nickerson; Scott L Taylor; Stephanie M Fullerton; Kenneth M Weiss; andrew clark; Jari H Stengård; Veikko Salomaa; Eric Boerwinkle; Charles F Sing
Sequence diversity and large-scale typing of SNPs in the human apolipoprotein E gene.
Genome research 2000;10(10):1532-45.
2000: Sarah A Tishkoff; Andrew J Pakstis; M Stoneking; Judith R Kidd; Giovanni Destro-Bisol; A Sanjantila; Ru-Band Lu; Amos S Deinard; Giorgio Sirugo; T Jenkins; Kenneth K Kidd; andrew clark
Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.
American journal of human genetics 2000;67(4):901-25.
2000: Stephanie M Fullerton; andrew clark; Kenneth M Weiss; Deborah A Nickerson; Scott L Taylor; J H Stengârd; Veikko Salomaa; E Vartiainen; M Perola; Eric Boerwinkle; Charles F Sing
Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism.
American journal of human genetics 2000;67(4):881-900.
2000: andrew clark; Emmanouil T Dermitzakis; Alberto Civetta
Nontransitivity of sperm precedence in Drosophila.
Evolution; international journal of organic evolution 2000;54(3):1030-5.
2000: Alberto Civetta; andrew clark
Chromosomal effects on male and female components of sperm precedence in Drosophila.
Genetical research 2000;75(2):143-51.
2000: Emmanouil T Dermitzakis; J P Masly; H M Waldrip; andrew clark
Non-Mendelian segregation of sex chromosomes in heterospecific Drosophila males.
Genetics 2000;154(2):687-94.
2000: T Prout; andrew clark
Seminal fluid causes temporarily reduced egg hatch in previously mated females.
Proceedings. Biological sciences / The Royal Society 2000;267(1439):201-3.
2000: andrew clark; A Civetta
Evolutionary biology. Protamine wars.
Nature 2000;403(6767):261, 263.
2000: Alan R Templeton; andrew clark; Kenneth M Weiss; D A Nickerson; Eric Boerwinkle; Charles F Sing
Recombinational and mutational hotspots within the human lipoprotein lipase gene.
American journal of human genetics 2000;66(1):69-83.
1999: andrew clark
The size distribution of homozygous segments in the human genome.
American journal of human genetics 1999;65(6):1489-92.
1999: Antonio Carvalho; andrew clark
Intron size and natural selection.
Nature 1999;401(6751):344.
1999: andrew clark
Chips for chimps.
Nature genetics 1999;22(2):119-20.
1999: Mark J Rieder; Scott L Taylor; andrew clark; Deborah A Nickerson
Sequence variation in the human angiotensin converting enzyme.
Nature genetics 1999;22(1):59-62.
1999: andrew clark; D J Begun; T Prout
Female x male interactions in Drosophila sperm competition.
Science (New York, N.Y.) 1999;283(5399):217-20.
1998: ET Dermitzakis; andrew clark; Costas Batargias; Antonios Magoulas; Eleftherios Zouros
Negative covariance suggests mutation bias in a two-locus microsatellite system in the fish Sparus aurata.
Genetics 1998;150(4):1567-75.
1998: andrew clark; C D Fucito
Stress tolerance and metabolic response to stress in Drosophila melanogaster.
Heredity 1998;81 ( Pt 5)():514-27.
1998: andrew clark; Kenneth M Weiss; Deborah A Nickerson; Scott L Taylor; Anne V Buchanan; Jari H Stengård; Veikko Salomaa; E Vartiainen; M Perola; Eric Boerwinkle; Charles F Sing
Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase.
American journal of human genetics 1998;63(2):595-612.
1998: Deborah A Nickerson; Scott L Taylor; Kenneth M Weiss; andrew clark; R G Hutchinson; Jari H Stengård; Veikko Salomaa; E Vartiainen; Eric Boerwinkle; Charles F Sing
DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene.
Nature genetics 1998;19(3):233-40.
1998: andrew clark; D J Begun
Female genotypes affect sperm displacement in Drosophila.
Genetics 1998;149(3):1487-93.
1998: Hamish G Spencer; Marcus W Feldman; andrew clark
Genetic conflicts, multiple paternity and the evolution of genomic imprinting.
Genetics 1998;148(2):893-904.
1998: andrew clark
Mutation-selection balance with multiple alleles.
Genetica 1998;102-103(1-6):41-7.
1997: Graham H Thomas; E C Newbern; C C Korte; M A Bales; SV Muse; andrew clark; D P Kiehart
Intragenic duplication and divergence in the spectrin superfamily of proteins.
Molecular biology and evolution 1997;14(12):1285-95.
1997: andrew clark; L Wang
Molecular population genetics of Drosophila immune system genes.
Genetics 1997;147(2):713-24.
1997: andrew clark; L Wang
Epistasis in measured genotypes: Drosophila P-element insertions.
Genetics 1997;147(1):157-63.
1997: andrew clark
Neutral behavior of shared polymorphism.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(15):7730-4.
1997: SV Muse; andrew clark; Graham H Thomas
Comparisons of the nucleotide substitution process among repetitive segments of the alpha- and beta-spectrin genes.
Journal of molecular evolution 1997;44(5):492-500.
1997: andrew clark
Stress and metabolic regulation in Drosophila.
EXS 1997;83():117-32.
1996: T Prout; andrew clark
Polymorphism in genes that influence sperm displacement.
Genetics 1996;144(1):401-8.
1996: andrew clark; B G Leicht; SV Muse
Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila.
Molecular biology and evolution 1996;13(3):471-82.
1995: David B Goldstein; andrew clark
Microsatellite variation in North American populations of Drosophila melanogaster.
Nucleic acids research 1995;23(19):3882-6.
1995: L Wang; andrew clark
Physiological genetics of the response to a high-sucrose diet by Drosophila melanogaster.
Biochemical genetics 1995;33(5-6):149-65.
1995: andrew clark; L Wang; T Hulleberg
Spontaneous mutation rate of modifiers of metabolism in Drosophila.
Genetics 1995;139(2):767-79.
1995: andrew clark; R N Guadalupe
Probing the evolution of senescence in Drosophila melanogaster with P-element tagging.
Genetica 1995;96(3):225-34.
1995: andrew clark; L Wang; T Hulleberg
P-element-induced variation in metabolic regulation in Drosophila.
Genetics 1995;139(1):337-48.
1995: andrew clark; Montserrat Aguadé; T Prout; L G Harshman; Charles H Langley
Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster.
Genetics 1995;139(1):189-201.
1995: andrew clark; J F Hamilton; G K Chambers
Inference of population subdivision from the VNTR distributions of New Zealanders.
Genetica 1995;96(1-2):37-49.
1995: B G Leicht; SV Muse; M Hanczyc; andrew clark
Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila.
Genetics 1995;139(1):299-308.
1994: andrew clark
Invasion and maintenance of a gene duplication.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(8):2950-4.
1994: andrew clark; S Silveria; W Meyers; Charles H Langley
Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(2):719-22.
1993: andrew clark; Caroline Lanigan
Prospects for estimating nucleotide divergence with RAPDs.
Molecular biology and evolution 1993;10(5):1096-111.
1993: B G Leicht; E M Lyckegaard; CM Benedict; andrew clark
Conservation of alternative splicing and genomic organization of the myosin alkali light-chain (Mlc1) gene among Drosophila species.
Molecular biology and evolution 1993;10(4):769-90.
1992: andrew clark; Thomas S Whittam
Sequencing errors and molecular evolutionary analysis.
Molecular biology and evolution 1992;9(4):744-52.
1991: D A Merriwether; andrew clark; S W Ballinger; Theodore G Schurr; Himla Soodyall; T Jenkins; S T Sherry; Douglas C Wallace
The structure of human mitochondrial DNA variation.
Journal of molecular evolution 1991;33(6):543-55.
1991: andrew clark; T H Kao
Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9823-7.
1991: andrew clark
Mutation-selection balance and metabolic control theory.
Genetics 1991;129(3):909-23.
1991: andrew clark; F M Szumski; E M Lyckegaard
Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates.
Genetical research 1991;58(1):7-13.
1991: E M Lyckegaard; andrew clark
Evolution of ribosomal RNA gene copy number on the sex chromosomes of Drosophila melanogaster.
Molecular biology and evolution 1991;8(4):458-74.
1991: D E Krane; andrew clark; J F Cheng; Ross C Hardison
Subfamily relationships and clustering of rabbit C repeats.
Molecular biology and evolution 1991;8(1):1-30.
1990: T R Ioerger; andrew clark; T H Kao
Polymorphism at the self-incompatibility locus in Solanaceae predates speciation.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(24):9732-5.
1990: andrew clark; F M Szumski; K A Bell; L E Keith; S Houtz; D A Merriwether
Direct and correlated responses to artificial selection on lipid and glycogen contents in Drosophila melanogaster.
Genetical research 1990;56(1):49-56.
1990: andrew clark
Two tests of Y chromosomal variation in male fertility of Drosophila melanogaster.
Genetics 1990;125(3):527-34.
1990: andrew clark
Inference of haplotypes from PCR-amplified samples of diploid populations.
Molecular biology and evolution 1990;7(2):111-22.
1989: andrew clark
Causes and consequences of variation in energy storage in Drosophila melanogaster.
Genetics 1989;123(1):131-44.
1989: andrew clark; L E Keith
Rapid enzyme kinetic assays of individual Drosophila and comparisons of field-caught D. melanogaster and D. simulans.
Biochemical genetics 1989;27(5-6):263-77.
1989: E M Lyckegaard; andrew clark
Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(6):1944-8.
1988: andrew clark
The evolution of the Y chromosome with X-Y recombination.
Genetics 1988;119(3):711-20.
1988: andrew clark; L E Keith
Variation among extracted lines of Drosophila melanogaster in triacylglycerol and carbohydrate storage.
Genetics 1988;119(3):595-607.
1988: andrew clark; E M Lyckegaard
Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster.
Genetics 1988;118(3):471-81.
1987: andrew clark
Neutrality tests of highly polymorphic restriction-fragment-length polymorphisms.
American journal of human genetics 1987;41(5):948-56.
1984: andrew clark; J Bundgaard
Selection components in background replacement lines of Drosophila.
Genetics 1984;108(1):181-200.
1981: andrew clark
Estimation of linkage in the presence of multiplicative viability effects.
Genetics 1981;99(1):157-68.