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andrew clark

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

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Molecular Evolution

Genes & Molecular Sequences

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Physiology

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Population Genetics

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Chemicals & Drugs

Base Sequence

Anatomy

Spermatozoa

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Publications

TOP 3
Casey B J; Glatt C E; Tottenham N; Soliman F; Bath K; Amso D; Altemus M; Pattwell S; Jones R; Levita L; McEwen B; Magariños A M; Gunnar M; Thomas K M; Mezey J; Clark A G; Hempstead B L; Lee F S
Brain-derived neurotrophic factor as a model system for examining gene by environment interactions across development.
Nielsen Rasmus; Hubisz Melissa J; Hellmann Ines; Torgerson Dara; Andrés Aida M; Albrechtsen Anders; Gutenkunst Ryan; Adams Mark D; Cargill Michele; Boyko Adam; Indap Amit; Bustamante Carlos D; Clark Andrew G
Darwinian and demographic forces affecting human protein coding genes.
McGraw Lisa A; Gibson Greg; Clark Andrew G; Wolfner Mariana F
Strain-dependent differences in several reproductive traits are not accompanied by early postmating transcriptome changes in female Drosophila melanogaster.

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All Publications

2009: Casey B J; Glatt C E; Tottenham N; Soliman F; Bath K; Amso D; Altemus M; Pattwell S; Jones R; Levita L; McEwen B; Magariños A M; Gunnar M; Thomas K M; Mezey J; Clark A G; Hempstead B L; Lee F S
Brain-derived neurotrophic factor as a model system for examining gene by environment interactions across development.
Neuroscience 2009;164(1):108-20.
2009: Nielsen Rasmus; Hubisz Melissa J; Hellmann Ines; Torgerson Dara; Andrés Aida M; Albrechtsen Anders; Gutenkunst Ryan; Adams Mark D; Cargill Michele; Boyko Adam; Indap Amit; Bustamante Carlos D; Clark Andrew G
Darwinian and demographic forces affecting human protein coding genes.
Genome research 2009;19(5):838-49.
2009: McGraw Lisa A; Gibson Greg; Clark Andrew G; Wolfner Mariana F
Strain-dependent differences in several reproductive traits are not accompanied by early postmating transcriptome changes in female Drosophila melanogaster.
Genetics 2009;181(4):1273-80.
2009: Scott J G; Liu N; Kristensen M; Clark A G
A case for sequencing the genome of Musca domestica (Diptera: Muscidae).
Journal of medical entomology 2009;46(2):175-82.
2008: Koerich Leonardo B; Wang Xiaoyun; Clark Andrew G; Carvalho Antonio Bernardo
Low conservation of gene content in the Drosophila Y chromosome.
Nature 2008;456(7224):949-51.
2008: Greenberg Anthony J; Stockwell Sarah R; Clark Andrew G
Evolutionary constraint and adaptation in the metabolic network of Drosophila.
Molecular biology and evolution 2008;25(12):2537-46.
2008: Clark Andrew G
Genome sequences from extinct relatives.
Cell 2008;134(3):388-9.
2008: McGraw Lisa A; Clark Andrew G; Wolfner Mariana F
Post-mating gene expression profiles of female Drosophila melanogaster in response to time and to four male accessory gland proteins.
Genetics 2008;179(3):1395-408.
2008: Hellmann Ines; Mang Yuan; Gu Zhiping; Li Peter; de la Vega Francisco M; Clark Andrew G; Nielsen Rasmus
Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals.
Genome research 2008;18(7):1020-9.
2008: Boyko Adam R; Williamson Scott H; Indap Amit R; Degenhardt Jeremiah D; Hernandez Ryan D; Lohmueller Kirk E; Adams Mark D; Schmidt Steffen; Sninsky John J; Sunyaev Shamil R; White Thomas J; Nielsen Rasmus; Clark Andrew G; Bustamante Carlos D
Assessing the evolutionary impact of amino acid mutations in the human genome.
PLoS genetics 2008;4(5):e1000083.
2008: Gold Bert; Kirchhoff Tomas; Stefanov Stefan; Lautenberger James; Viale Agnes; Garber Judy; Friedman Eitan; Narod Steven; Olshen Adam B; Gregersen Peter; Kosarin Kristi; Olsh Adam; Bergeron Julie; Ellis Nathan A; Klein Robert J; Clark Andrew G; Norton Larry; Dean Michael; Boyd Jeff; Offit Kenneth
Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(11):4340-5.
2008: Wittkopp Patricia J; Haerum Belinda K; Clark Andrew G
Regulatory changes underlying expression differences within and between Drosophila species.
Nature genetics 2008;40(3):346-50.
2008: Larracuente Amanda M; Sackton Timothy B; Greenberg Anthony J; Wong Alex; Singh Nadia D; Sturgill David; Zhang Yu; Oliver Brian; Clark Andrew G
Evolution of protein-coding genes in Drosophila.
Trends in genetics : TIG 2008;24(3):114-23.
2008: Wittkopp Patricia J; Haerum Belinda K; Clark Andrew G
Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster.
Genetics 2008;178(3):1831-5.
2008: Lohmueller Kirk E; Indap Amit R; Schmidt Steffen; Boyko Adam R; Hernandez Ryan D; Hubisz Melissa J; Sninsky John J; White Thomas J; Sunyaev Shamil R; Nielsen Rasmus; Clark Andrew G; Bustamante Carlos D
Proportionally more deleterious genetic variation in European than in African populations.
Nature 2008;451(7181):994-7.
2008: Singh Nadia D; Larracuente Amanda M; Clark Andrew G
Contrasting the efficacy of selection on the X and autosomes in Drosophila.
Molecular biology and evolution 2008;25(2):454-67.
2008: Pollard Katherine S; Serre David; Wang Xu; Tao Heng; Grundberg Elin; Hudson Thomas J; Clark Andrew G; Frazer Kelly
A genome-wide approach to identifying novel-imprinted genes.
Human genetics 2008;122(6):625-34.
2008: Wang Xu; Sun Qi; McGrath Sean D; Mardis Elaine R; Soloway Paul D; Clark Andrew G
Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain.
PloS one 2008;3(12):e3839.
2008: McKean Kurt A; Yourth Christopher P; Lazzaro Brian P; Clark Andrew G
The evolutionary costs of immunological maintenance and deployment.
BMC evolutionary biology 2008;8():76.
2008: Olshen Adam B; Gold Bert; Lohmueller Kirk E; Struewing Jeffery P; Satagopan Jaya; Stefanov Stefan A; Eskin Eleazar; Kirchhoff Tomas; Lautenberger James A; Klein Robert J; Friedman Eitan; Norton Larry; Ellis Nathan A; Viale Agnes; Lee Catherine S; Borgen Patrick I; Clark Andrew G; Offit Kenneth; Boyd Jeff
Analysis of genetic variation in Ashkenazi Jews by high density SNP genotyping.
BMC genetics 2008;9():14.
2007: Sackton Timothy B; Lazzaro Brian P; Schlenke Todd A; Evans Jay D; Hultmark Dan; Clark Andrew G
Dynamic evolution of the innate immune system in Drosophila.
Nature genetics 2007;39(12):1461-8.
2007: McGraw Lisa A; Fiumera Anthony C; Ramakrishnan Meera; Madhavarapu Swetha; Clark Andrew G; Wolfner Mariana F
Larval rearing environment affects several post-copulatory traits in Drosophila melanogaster.
Biology letters 2007;3(6):607-10.
2007: Huntley Melanie A; Clark Andrew G
Evolutionary analysis of amino acid repeats across the genomes of 12 Drosophila species.
Molecular biology and evolution 2007;24(12):2598-609.
2007: Stark Alexander; Lin Michael F; Kheradpour Pouya; Pedersen Jakob S; Parts Leopold; Carlson Joseph W; Crosby Madeline A; Rasmussen Matthew D; Roy Sushmita; Deoras Ameya N; Ruby J Graham; Brennecke Julius; Hodges Emily; Hinrichs Angie S; Caspi Anat; Paten Benedict; Park Seung-Won; Han Mira V; Maeder Morgan L; Polansky Benjamin J; Robson Bryanne E; Aerts Stein; van Helden Jacques; Hassan Bassem; Gilbert Donald G; Eastman Deborah A; Rice Michael; Weir Michael; Hahn Matthew W; Park Yongkyu; Dewey Colin N; Pachter Lior; Kent W James; Haussler David; Lai Eric C; Bartel David P; Hannon Gregory J; Kaufman Thomas C; Eisen Michael B; Clark Andrew G; Smith Douglas; Celniker Susan E; Gelbart William M; Kellis Manolis
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures.
Nature 2007;450(7167):219-32.
2007: Clark Andrew G; Eisen Michael B; Smith Douglas R; Bergman Casey M; Oliver Brian; Markow Therese A; Kaufman Thomas C; Kellis Manolis; Gelbart William; Iyer Venky N; Pollard Daniel A; Sackton Timothy B; Larracuente Amanda M; Singh Nadia D; Abad Jose P; Abt Dawn N; Adryan Boris; Aguade Montserrat; Akashi Hiroshi; Anderson Wyatt W; Aquadro Charles F; Ardell David H; Arguello Roman; Artieri Carlo G; Barbash Daniel A; Barker Daniel; Barsanti Paolo; Batterham Phil; Batzoglou Serafim; Begun Dave; Bhutkar Arjun; Blanco Enrico; Bosak Stephanie A; Bradley Robert K; Brand Adrianne D; Brent Michael R; Brooks Angela N; Brown Randall H; Butlin Roger K; Caggese Corrado; Calvi Brian R; Bernardo de Carvalho A; Caspi Anat; Castrezana Sergio; Celniker Susan E; Chang Jean L; Chapple Charles; Chatterji Sourav; Chinwalla Asif; Civetta Alberto; Clifton Sandra W; Comeron Josep M; Costello James C; Coyne Jerry A; Daub Jennifer; David Robert G; Delcher Arthur L; Delehaunty Kim; Do Chuong B; Ebling Heather; Edwards Kevin; Eickbush Thomas; Evans Jay D; Filipski Alan; Findeiss Sven; Freyhult Eva; Fulton Lucinda; Fulton Robert; Garcia Ana C L; Gardiner Anastasia; Garfield David A; Garvin Barry E; Gibson Greg; Gilbert Don; Gnerre Sante; Godfrey Jennifer; Good Robert; Gotea Valer; Gravely Brenton; Greenberg Anthony J; Griffiths-Jones Sam; Gross Samuel; Guigo Roderic; Gustafson Erik A; Haerty Wilfried; Hahn Matthew W; Halligan Daniel L; Halpern Aaron L; Halter Gillian M; Han Mira V; Heger Andreas; Hillier LaDeana; Hinrichs Angie S; Holmes Ian; Hoskins Roger A; Hubisz Melissa J; Hultmark Dan; Huntley Melanie A; Jaffe David B; Jagadeeshan Santosh; Jeck William R; Johnson Justin; Jones Corbin D; Jordan William C; Karpen Gary H; Kataoka Eiko; Keightley Peter D; Kheradpour Pouya; Kirkness Ewen F; Koerich Leonardo B; Kristiansen Karsten; Kudrna Dave; Kulathinal Rob J; Kumar Sudhir; Kwok Roberta; Lander Eric; Langley Charles H; Lapoint Richard; Lazzaro Brian P; Lee So-Jeong; Levesque Lisa; Li Ruiqiang; Lin Chiao-Feng; Lin Michael F; Lindblad-Toh Kerstin; Llopart Ana; Long Manyuan; Low Lloyd; Lozovsky Elena; Lu Jian; Luo Meizhong; Machado Carlos A; Makalowski Wojciech; Marzo Mar; Matsuda Muneo; Matzkin Luciano; McAllister Bryant; McBride Carolyn S; McKernan Brendan; McKernan Kevin; Mendez-Lago Maria; Minx Patrick; Mollenhauer Michael U; Montooth Kristi; Mount Stephen M; Mu Xu; Myers Eugene; Negre Barbara; Newfeld Stuart; Nielsen Rasmus; Noor Mohamed A F; O'Grady Patrick; Pachter Lior; Papaceit Montserrat; Parisi Matthew J; Parisi Michael; Parts Leopold; Pedersen Jakob S; Pesole Graziano; Phillippy Adam M; Ponting Chris P; Pop Mihai; Porcelli Damiano; Powell Jeffrey R; Prohaska Sonja; Pruitt Kim; Puig Marta; Quesneville Hadi; Ram Kristipati Ravi; Rand David; Rasmussen Matthew D; Reed Laura K; Reenan Robert; Reily Amy; Remington Karin A; Rieger Tania T; Ritchie Michael G; Robin Charles; Rogers Yu-Hui; Rohde Claudia; Rozas Julio; Rubenfield Marc J; Ruiz Alfredo; Russo Susan; Salzberg Steven L; Sanchez-Gracia Alejandro; Saranga David J; Sato Hajime; Schaeffer Stephen W; Schatz Michael C; Schlenke Todd; Schwartz Russell; Segarra Carmen; Singh Rama S; Sirot Laura; Sirota Marina; Sisneros Nicholas B; Smith Chris D; Smith Temple F; Spieth John; Stage Deborah E; Stark Alexander; Stephan Wolfgang; Strausberg Robert L; Strempel Sebastian; Sturgill David; Sutton Granger; Sutton Granger G; Tao Wei; Teichmann Sarah; Tobari Yoshiko N; Tomimura Yoshihiko; Tsolas Jason M; Valente Vera L S; Venter Eli; Venter J Craig; Vicario Saverio; Vieira Filipe G; Vilella Albert J; Villasante Alfredo; Walenz Brian; Wang Jun; Wasserman Marvin; Watts Thomas; Wilson Derek; Wilson Richard K; Wing Rod A; Wolfner Mariana F; Wong Alex; Wong Gane Ka-Shu; Wu Chung-I; Wu Gabriel; Yamamoto Daisuke; Yang Hsiao-Pei; Yang Shiaw-Pyng; Yorke James A; Yoshida Kiyohito; Zdobnov Evgeny; Zhang Peili; Zhang Yu; Zimin Aleksey V; Baldwin Jennifer; Abdouelleil Amr; Abdulkadir Jamal; Abebe Adal; Abera Brikti; Abreu Justin; Acer St Christophe; Aftuck Lynne; Alexander Allen; An Peter; Anderson Erica; Anderson Scott; Arachi Harindra; Azer Marc; Bachantsang Pasang; Barry Andrew; Bayul Tashi; Berlin Aaron; Bessette Daniel; Bloom Toby; Blye Jason; Boguslavskiy Leonid; Bonnet Claude; Boukhgalter Boris; Bourzgui Imane; Brown Adam; Cahill Patrick; Channer Sheridon; Cheshatsang Yama; Chuda Lisa; Citroen Mieke; Collymore Alville; Cooke Patrick; Costello Maura; D'Aco Katie; Daza Riza; De Haan Georgius; DeGray Stuart; DeMaso Christina; Dhargay Norbu; Dooley Kimberly; Dooley Erin; Doricent Missole; Dorje Passang; Dorjee Kunsang; Dupes Alan; Elong Richard; Falk Jill; Farina Abderrahim; Faro Susan; Ferguson Diallo; Fisher Sheila; Foley Chelsea D; Franke Alicia; Friedrich Dennis; Gadbois Loryn; Gearin Gary; Gearin Christina R; Giannoukos Georgia; Goode Tina; Graham Joseph; Grandbois Edward; Grewal Sharleen; Gyaltsen Kunsang; Hafez Nabil; Hagos Birhane; Hall Jennifer; Henson Charlotte; Hollinger Andrew; Honan Tracey; Huard Monika D; Hughes Leanne; Hurhula Brian; Husby M Erii; Kamat Asha; Kanga Ben; Kashin Seva; Khazanovich Dmitry; Kisner Peter; Lance Krista; Lara Marcia; Lee William; Lennon Niall; Letendre Frances; LeVine Rosie; Lipovsky Alex; Liu Xiaohong; Liu Jinlei; Liu Shangtao; Lokyitsang Tashi; Lokyitsang Yeshi; Lubonja Rakela; Lui Annie; MacDonald Pen; Magnisalis Vasilia; Maru Kebede; Matthews Charles; McCusker William; McDonough Susan; Mehta Teena; Meldrim James; Meneus Louis; Mihai Oana; Mihalev Atanas; Mihova Tanya; Mittelman Rachel; Mlenga Valentine; Montmayeur Anna; Mulrain Leonidas; Navidi Adam; Naylor Jerome; Negash Tamrat; Nguyen Thu; Nguyen Nga; Nicol Robert; Norbu Choe; Norbu Nyima; Novod Nathaniel; O'Neill Barry; Osman Sahal; Markiewicz Eva; Oyono Otero L; Patti Christopher; Phunkhang Pema; Pierre Fritz; Priest Margaret; Raghuraman Sujaa; Rege Filip; Reyes Rebecca; Rise Cecil; Rogov Peter; Ross Keenan; Ryan Elizabeth; Settipalli Sampath; Shea Terry; Sherpa Ngawang; Shi Lu; Shih Diana; Sparrow Todd; Spaulding Jessica; Stalker John; Stange-Thomann Nicole; Stavropoulos Sharon; Stone Catherine; Strader Christopher; Tesfaye Senait; Thomson Talene; Thoulutsang Yama; Thoulutsang Dawa; Topham Kerri; Topping Ira; Tsamla Tsamla; Vassiliev Helen; Vo Andy; Wangchuk Tsering; Wangdi Tsering; Weiand Michael; Wilkinson Jane; Wilson Adam; Yadav Shailendra; Young Geneva; Yu Qing; Zembek Lisa; Zhong Danni; Zimmer Andrew; Zwirko Zac; Jaffe David B; Alvarez Pablo; Brockman Will; Butler Jonathan; Chin CheeWhye; Gnerre Sante; Grabherr Manfred; Kleber Michael; Mauceli Evan; MacCallum Iain
Evolution of genes and genomes on the Drosophila phylogeny.
Nature 2007;450(7167):203-18.
2007: Nielsen Rasmus; Hellmann Ines; Hubisz Melissa; Bustamante Carlos; Clark Andrew G
Recent and ongoing selection in the human genome.
Nature reviews. Genetics 2007;8(11):857-68.
2007: Andrés Aida M; Clark Andrew G; Shimmin Lawrence; Boerwinkle Eric; Sing Charles F; Hixson James E
Understanding the accuracy of statistical haplotype inference with sequence data of known phase.
Genetic epidemiology 2007;31(7):659-71.
2007: Schlenke Todd A; Morales Jorge; Govind Shubha; Clark Andrew G
Contrasting infection strategies in generalist and specialist wasp parasitoids of Drosophila melanogaster.
PLoS pathogens 2007;3(10):1486-501.
2007: Clark Andrew G; Li Jian
Conjuring SNPs to detect associations.
Nature genetics 2007;39(7):815-6.
2007: Kininis Miltiadis; Chen Benjamin S; Diehl Adam G; Isaacs Gary D; Zhang Tong; Siepel Adam C; Clark Andrew G; Kraus W Lee
Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.
Molecular and cellular biology 2007;27(14):5090-104.
2007: Williamson Scott H; Hubisz Melissa J; Clark Andrew G; Payseur Bret A; Bustamante Carlos D; Nielsen Rasmus
Localizing recent adaptive evolution in the human genome.
PLoS genetics 2007;3(6):e90.
2007: Fiumera Anthony C; Dumont Bethany L; Clark Andrew G
Associations between sperm competition and natural variation in male reproductive genes on the third chromosome of Drosophila melanogaster.
Genetics 2007;176(2):1245-60.
2007: Gibbs Richard A; Rogers Jeffrey; Katze Michael G; Bumgarner Roger; Weinstock George M; Mardis Elaine R; Remington Karin A; Strausberg Robert L; Venter J Craig; Wilson Richard K; Batzer Mark A; Bustamante Carlos D; Eichler Evan E; Hahn Matthew W; Hardison Ross C; Makova Kateryna D; Miller Webb; Milosavljevic Aleksandar; Palermo Robert E; Siepel Adam; Sikela James M; Attaway Tony; Bell Stephanie; Bernard Kelly E; Buhay Christian J; Chandrabose Mimi N; Dao Marvin; Davis Clay; Delehaunty Kimberly D; Ding Yan; Dinh Huyen H; Dugan-Rocha Shannon; Fulton Lucinda A; Gabisi Ramatu Ayiesha; Garner Toni T; Godfrey Jennifer; Hawes Alicia C; Hernandez Judith; Hines Sandra; Holder Michael; Hume Jennifer; Jhangiani Shalini N; Joshi Vandita; Khan Ziad Mohid; Kirkness Ewen F; Cree Andrew; Fowler R Gerald; Lee Sandra; Lewis Lora R; Li Zhangwan; Liu Yih-Shin; Moore Stephanie M; Muzny Donna; Nazareth Lynne V; Ngo Dinh Ngoc; Okwuonu Geoffrey O; Pai Grace; Parker David; Paul Heidie A; Pfannkoch Cynthia; Pohl Craig S; Rogers Yu-Hui; Ruiz San Juana; Sabo Aniko; Santibanez Jireh; Schneider Brian W; Smith Scott M; Sodergren Erica; Svatek Amanda F; Utterback Teresa R; Vattathil Selina; Warren Wesley; White Courtney Sherell; Chinwalla Asif T; Feng Yucheng; Halpern Aaron L; Hillier Ladeana W; Huang Xiaoqiu; Minx Pat; Nelson Joanne O; Pepin Kymberlie H; Qin Xiang; Sutton Granger G; Venter Eli; Walenz Brian P; Wallis John W; Worley Kim C; Yang Shiaw-Pyng; Jones Steven M; Marra Marco A; Rocchi Mariano; Schein Jacqueline E; Baertsch Robert; Clarke Laura; Csürös Miklós; Glasscock Jarret; Harris R Alan; Havlak Paul; Jackson Andrew R; Jiang Huaiyang; Liu Yue; Messina David N; Shen Yufeng; Song Henry Xing-Zhi; Wylie Todd; Zhang Lan; Birney Ewan; Han Kyudong; Konkel Miriam K; Lee Jungnam; Smit Arian F A; Ullmer Brygg; Wang Hui; Xing Jinchuan; Burhans Richard; Cheng Ze; Karro John E; Ma Jian; Raney Brian; She Xinwei; Cox Michael J; Demuth Jeffery P; Dumas Laura J; Han Sang-Gook; Hopkins Janet; Karimpour-Fard Anis; Kim Young H; Pollack Jonathan R; Vinar Tomas; Addo-Quaye Charles; Degenhardt Jeremiah; Denby Alexandra; Hubisz Melissa J; Indap Amit; Kosiol Carolin; Lahn Bruce T; Lawson Heather A; Marklein Alison; Nielsen Rasmus; Vallender Eric J; Clark Andrew G; Ferguson Betsy; Hernandez Ryan D; Hirani Kashif; Kehrer-Sawatzki Hildegard; Kolb Jessica; Patil Shobha; Pu Ling-Ling; Ren Yanru; Smith David Glenn; Wheeler David A; Schenck Ian; Ball Edward V; Chen Rui; Cooper David N; Giardine Belinda; Hsu Fan; Kent W James; Lesk Arthur; Nelson David L; O'brien William E; Prüfer Kay; Stenson Peter D; Wallace James C; Ke Hui; Liu Xiao-Ming; Wang Peng; Xiang Andy Peng; Yang Fan; Barber Galt P; Haussler David; Karolchik Donna; Kern Andy D; Kuhn Robert M; Smith Kayla E; Zwieg Ann S
Evolutionary and biomedical insights from the rhesus macaque genome.
Science (New York, N.Y.) 2007;316(5822):222-34.
2007: Jørgensen Frank Grønlund; Schierup Mikkel Heide; Clark Andrew G
Heterogeneity in regional GC content and differential usage of codons and amino acids in GC-poor and GC-rich regions of the genome of Apis mellifera.
Molecular biology and evolution 2007;24(2):611-9.
2007: Ma Xin; Liu Yuhua; Gowen Brian B; Graviss Edward A; Clark Andrew G; Musser James M
Full-exon resequencing reveals toll-like receptor variants contribute to human susceptibility to tuberculosis disease.
PloS one 2007;2(12):e1318.
2007: Sainudiin Raazesh; Clark Andrew G; Durrett Richard T
Simple models of genomic variation in human SNP density.
BMC genomics 2007;8():146.
2006: Lazzaro Brian P; Sackton Timothy B; Clark Andrew G
Genetic variation in Drosophila melanogaster resistance to infection: a comparison across bacteria.
Genetics 2006;174(3):1539-54.
2006: Whitfield Charles W; Behura Susanta K; Berlocher Stewart H; Clark Andrew G; Johnston J Spencer; Sheppard Walter S; Smith Deborah R; Suarez Andrew V; Weaver Daniel; Tsutsui Neil D
Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera.
Science (New York, N.Y.) 2006;314(5799):642-5.
2006: Montooth Kristi L; Siebenthall Kyle T; Clark Andrew G
Membrane lipid physiology and toxin catabolism underlie ethanol and acetic acid tolerance in Drosophila melanogaster.
The Journal of experimental biology 2006;209(Pt 19):3837-50.
2006: Spencer Hamish G; Clark Andrew G
A chip off the old block: a model for the evolution of genomic imprinting via selection for parental similarity.
Genetics 2006;174(2):931-5.
2006: Payseur Bret A; Clark Andrew G; Hixson James; Boerwinkle Eric; Sing Charles F
Contrasting multi-site genotypic distributions among discordant quantitative phenotypes: the APOA1/C3/A4/A5 gene cluster and cardiovascular disease risk factors.
Genetic epidemiology 2006;30(6):508-18.
2006: Brown C M; Rea T J; Hamon S C; Hixson J E; Boerwinkle E; Clark A G; Sing C F
The contribution of individual and pairwise combinations of SNPs in the APOA1 and APOC3 genes to interindividual HDL-C variability.
Journal of molecular medicine (Berlin, Germany) 2006;84(7):561-72.
2006: Wittkopp Patricia J; Haerum Belinda K; Clark Andrew G
Parent-of-origin effects on mRNA expression in Drosophila melanogaster not caused by genomic imprinting.
Genetics 2006;173(3):1817-21.
2006: Clark Andrew G
Genomics of the evolutionary process.
Trends in ecology & evolution (Personal edition) 2006;21(6):316-21.
2006: Fiumera Anthony C; Dumont Bethany L; Clark Andrew G
Natural variation in male-induced 'cost-of-mating' and allele-specific association with male reproductive genes in Drosophila melanogaster.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2006;361(1466):355-61.
2006: Wilson Gary M; Flibotte Stephane; Missirlis Perseus I; Marra Marco A; Jones Steven; Thornton Kevin; Clark Andrew G; Holt Robert A
Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla.
Genome research 2006;16(2):173-81.
2006: Hamon Sara C; Kardia Sharon L R; Boerwinkle Eric; Liu Kiang; Klos Kathy L E; Clark Andrew G; Sing Charles F
Evidence for consistent intragenic and intergenic interactions between SNP effects in the APOA1/C3/A4/A5 gene cluster.
Human heredity 2006;61(2):87-96.
2005: Stranger Barbara E; Forrest Matthew S; Clark Andrew G; Minichiello Mark J; Deutsch Samuel; Lyle Robert; Hunt Sarah; Kahl Brenda; Antonarakis Stylianos E; Tavaré Simon; Deloukas Panagiotis; Dermitzakis Emmanouil T
Genome-wide associations of gene expression variation in humans.
PLoS genetics 2005;1(6):e78.
2005: Landry Christian R; Wittkopp Patricia J; Taubes Clifford H; Ranz Jose M; Clark Andrew G; Hartl Daniel L
Compensatory cis-trans evolution and the dysregulation of gene expression in interspecific hybrids of Drosophila.
Genetics 2005;171(4):1813-22.
2005: Nielsen Rasmus; Williamson Scott; Kim Yuseob; Hubisz Melissa J; Clark Andrew G; Bustamante Carlos
Genomic scans for selective sweeps using SNP data.
Genome research 2005;15(11):1566-75.
2005: Clark Andrew G; Hubisz Melissa J; Bustamante Carlos D; Williamson Scott H; Nielsen Rasmus
Ascertainment bias in studies of human genome-wide polymorphism.
Genome research 2005;15(11):1496-502.
2005: Clark Andrew G; Boerwinkle Eric; Hixson James; Sing Charles F
Determinants of the success of whole-genome association testing.
Genome research 2005;15(11):1463-7.
2005: Bustamante Carlos D; Fledel-Alon Adi; Williamson Scott; Nielsen Rasmus; Hubisz Melissa Todd; Glanowski Stephen; Tanenbaum David M; White Thomas J; Sninsky John J; Hernandez Ryan D; Civello Daniel; Adams Mark D; Cargill Michele; Clark Andrew G
Natural selection on protein-coding genes in the human genome.
Nature 2005;437(7062):1153-7.
2005: Mueller J L; Ravi Ram K; McGraw L A; Bloch Qazi M C; Siggia E D; Clark A G; Aquadro C F; Wolfner M F
Cross-species comparison of Drosophila male accessory gland protein genes.
Genetics 2005;171(1):131-43.
2005: Clark Andrew G
Hot spots unglued.
Nature genetics 2005;37(6):563-4.
2005: Nielsen Rasmus; Bustamante Carlos; Clark Andrew G; Glanowski Stephen; Sackton Timothy B; Hubisz Melissa J; Fledel-Alon Adi; Tanenbaum David M; Civello Daniel; White Thomas J; J Sninsky John; Adams Mark D; Cargill Michele
A scan for positively selected genes in the genomes of humans and chimpanzees.
PLoS biology 2005;3(6):e170.
2005: Ohashi J; Clark A G
Application of the stepwise focusing method to optimize the cost-effectiveness of genome-wide association studies with limited research budgets for genotyping and phenotyping.
Annals of human genetics 2005;69(Pt 3):323-8.
2005: De La Vega Francisco M; Isaac Hadar; Collins Andrew; Scafe Charles R; Halldórsson Bjarni V; Su Xiaoping; Lippert Ross A; Wang Yu; Laig-Webster Marion; Koehler Ryan T; Ziegle Janet S; Wogan Lewis T; Stevens Junko F; Leinen Kyle M; Olson Sheri J; Guegler Karl J; You Xiaoqing; Xu Lily H; Hemken Heinz G; Kalush Francis; Itakura Mitsuo; Zheng Yi; de Thé Guy; O'Brien Stephen J; Clark Andrew G; Istrail Sorin; Hunkapiller Michael W; Spier Eugene G; Gilbert Dennis A
The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern.
Genome research 2005;15(4):454-62.
2005: Zhang Min; Montooth Kristi L; Wells Martin T; Clark Andrew G; Zhang Dabao
Mapping multiple Quantitative Trait Loci by Bayesian classification.
Genetics 2005;169(4):2305-18.
2005: Klos Kathy L E; Hamon Sara; Clark Andrew G; Boerwinkle Eric; Liu Kiang; Sing Charles F
APOA5 polymorphisms influence plasma triglycerides in young, healthy African Americans and whites of the CARDIA Study.
Journal of lipid research 2005;46(3):564-71.
2005: Altshuler David; Clark Andrew G
Genetics. Harvesting medical information from the human family tree.
Science (New York, N.Y.) 2005;307(5712):1052-3.
2005: Richards Stephen; Liu Yue; Bettencourt Brian R; Hradecky Pavel; Letovsky Stan; Nielsen Rasmus; Thornton Kevin; Hubisz Melissa J; Chen Rui; Meisel Richard P; Couronne Olivier; Hua Sujun; Smith Mark A; Zhang Peili; Liu Jing; Bussemaker Harmen J; van Batenburg Marinus F; Howells Sally L; Scherer Steven E; Sodergren Erica; Matthews Beverly B; Crosby Madeline A; Schroeder Andrew J; Ortiz-Barrientos Daniel; Rives Catharine M; Metzker Michael L; Muzny Donna M; Scott Graham; Steffen David; Wheeler David A; Worley Kim C; Havlak Paul; Durbin K James; Egan Amy; Gill Rachel; Hume Jennifer; Morgan Margaret B; Miner George; Hamilton Cerissa; Huang Yanmei; Waldron Lenée; Verduzco Daniel; Clerc-Blankenburg Kerstin P; Dubchak Inna; Noor Mohamed A F; Anderson Wyatt; White Kevin P; Clark Andrew G; Schaeffer Stephen W; Gelbart William; Weinstock George M; Gibbs Richard A
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution.
Genome research 2005;15(1):1-18.
2005: Carvalho Antonio Bernardo; Clark Andrew G
Y chromosome of D. pseudoobscura is not homologous to the ancestral Drosophila Y.
Science (New York, N.Y.) 2005;307(5706):108-10.
2005: Fiumera Anthony C; Dumont Bethany L; Clark Andrew G
Sperm competitive ability in Drosophila melanogaster associated with variation in male reproductive proteins.
Genetics 2005;169(1):243-57.
2005: Rodin Andrei; Mosley Thomas H; Clark Andrew G; Sing Charles F; Boerwinkle Eric
Mining genetic epidemiology data with Bayesian networks application to APOE gene variation and plasma lipid levels.
Journal of computational biology : a journal of computational molecular cell biology 2005;12(1):1-11.
2005: Ohashi Jun; Naka Izumi; Patarapotikul Jintana; Hananantachai Hathairad; Brittenham Gary; Looareesuwan Sornchai; Clark Andrew G; Tokunaga Katsushi
Strong linkage disequilibrium of a HbE variant with the (AT)9(T)5 repeat in the BP1 binding site upstream of the beta-globin gene in the Thai population.
Journal of human genetics 2005;50(1):7-11.
2004: Gold Bert; Kalush Francis; Bergeron Julie; Scott Kevin; Mitra Nandita; Wilson Kelly; Ellis Nathan; Huang Helen; Chen Michael; Lippert Ross; Halldorsson Bjarni V; Woodworth Beth; White Thomas; Clark Andrew G; Parl Fritz F; Broder Samuel; Dean Michael; Offit Kenneth
Estrogen receptor genotypes and haplotypes associated with breast cancer risk.
Cancer research 2004;64(24):8891-900.
2004: Nielsen Rasmus; Hubisz Melissa J; Clark Andrew G
Reconstituting the frequency spectrum of ascertained single-nucleotide polymorphism data.
Genetics 2004;168(4):2373-82.
2004: Clark Andrew G
The role of haplotypes in candidate gene studies.
Genetic epidemiology 2004;27(4):321-33.
2004: Hamon S C; Stengard J H; Clark A G; Salomaa V; Boerwinkle E; Sing C F
Evidence for non-additive influence of single nucleotide polymorphisms within the apolipoprotein E gene.
Annals of human genetics 2004;68(Pt 6):521-35.
2004: McGraw Lisa A; Gibson Greg; Clark Andrew G; Wolfner Mariana F
Genes regulated by mating, sperm, or seminal proteins in mated female Drosophila melanogaster.
Current biology : CB 2004;14(16):1509-14.
2004: Halldórsson Bjarni V; Bafna Vineet; Lippert Ross; Schwartz Russell; De La Vega Francisco M; Clark Andrew G; Istrail Sorin
Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies.
Genome research 2004;14(8):1633-40.
2004: Wittkopp Patricia J; Haerum Belinda K; Clark Andrew G
Evolutionary changes in cis and trans gene regulation.
Nature 2004;430(6995):85-8.
2004: Ohashi Jun; Naka Izumi; Patarapotikul Jintana; Hananantachai Hathairad; Brittenham Gary; Looareesuwan Sornchai; Clark Andrew G; Tokunaga Katsushi
Extended linkage disequilibrium surrounding the hemoglobin E variant due to malarial selection.
American journal of human genetics 2004;74(6):1198-208.
2004: Fullerton Stephanie M; Buchanan Anne V; Sonpar Vibhor A; Taylor Scott L; Smith Joshua D; Carlson Christopher S; Salomaa Veikko; Stengård Jari H; Boerwinkle Eric; Clark Andrew G; Nickerson Deborah A; Weiss Kenneth M
The effects of scale: variation in the APOA1/C3/A4/A5 gene cluster.
Human genetics 2004;115(1):36-56.
2004: Lazzaro Brian P; Sceurman Bonnielin K; Clark Andrew G
Genetic basis of natural variation in D. melanogaster antibacterial immunity.
Science (New York, N.Y.) 2004;303(5665):1873-6.
2004: Clark Andrew G
The 6th international meeting on single nucleotide polymorphism and complex genome analysis. November 20-23, 2003, Chantilly, VA, USA.
Pharmacogenomics 2004;5(2):153-6.
2004: Bundgaard J; Barker J S F; Frydenberg J; Clark A G
Remating and sperm displacement in a natural population of Drosophila buzzatii inferred from mother-offspring analysis of microsatellite loci.
Journal of evolutionary biology 2004;17(2):376-81.
2004: Istrail Sorin; Sutton Granger G; Florea Liliana; Halpern Aaron L; Mobarry Clark M; Lippert Ross; Walenz Brian; Shatkay Hagit; Dew Ian; Miller Jason R; Flanigan Michael J; Edwards Nathan J; Bolanos Randall; Fasulo Daniel; Halldorsson Bjarni V; Hannenhalli Sridhar; Turner Russell; Yooseph Shibu; Lu Fu; Nusskern Deborah R; Shue Bixiong Chris; Zheng Xiangqun Holly; Zhong Fei; Delcher Arthur L; Huson Daniel H; Kravitz Saul A; Mouchard Laurent; Reinert Knut; Remington Karin A; Clark Andrew G; Waterman Michael S; Eichler Evan E; Adams Mark D; Hunkapiller Michael W; Myers Eugene W; Venter J Craig
Whole-genome shotgun assembly and comparison of human genome assemblies.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(7):1916-21.
2004: Spencer Hamish G; Feldman Marcus W; Clark Andrew G; Weisstein Anton E
The effect of genetic conflict on genomic imprinting and modification of expression at a sex-linked locus.
Genetics 2004;166(1):565-79.
2004: Chookajorn Thanat; Kachroo Aardra; Ripoll Daniel R; Clark Andrew G; Nasrallah June B
Specificity determinants and diversification of the Brassica self-incompatibility pollen ligand.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(4):911-7.
2003: Clark Andrew G; Glanowski Stephen; Nielsen Rasmus; Thomas Paul D; Kejariwal Anish; Todd Melissa A; Tanenbaum David M; Civello Daniel; Lu Fu; Murphy Brian; Ferriera Steve; Wang Gary; Zheng Xianqgun; White Thomas J; Sninsky John J; Adams Mark D; Cargill Michele
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios.
Science (New York, N.Y.) 2003;302(5652):1960-3.
2003: Zhang Jinghui; Rowe William L; Clark Andrew G; Buetow Kenneth H
Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations.
American journal of human genetics 2003;73(5):1073-81.
2003: Montooth Kristi L; Marden James H; Clark Andrew G
Mapping determinants of variation in energy metabolism, respiration and flight in Drosophila.
Genetics 2003;165(2):623-35.
2003: Kroetz Deanna L; Pauli-Magnus Christiane; Hodges Laura M; Huang Conrad C; Kawamoto Michiko; Johns Susan J; Stryke Doug; Ferrin Thomas E; DeYoung Joseph; Taylor Travis; Carlson Elaine J; Herskowitz Ira; Giacomini Kathleen M; Clark Andrew G;
Sequence diversity and haplotype structure in the human ABCB1 (MDR1, multidrug resistance transporter) gene.
Pharmacogenetics 2003;13(8):481-94.
2003: Clark Andrew G; Nielsen Rasmus; Signorovitch James; Matise Tara C; Glanowski Stephen; Heil Jeremy; Winn-Deen Emily S; Holden Arthur L; Lai Eric
Linkage disequilibrium and inference of ancestral recombination in 538 single-nucleotide polymorphism clusters across the human genome.
American journal of human genetics 2003;73(2):285-300.
2003: Matise Tara C; Sachidanandam Ravi; Clark Andrew G; Kruglyak Leonid; Wijsman Ellen; Kakol Jerzy; Buyske Steven; Chui Buena; Cohen Patrick; de Toma Claudia; Ehm Margaret; Glanowski Stephen; He Chunsheng; Heil Jeremy; Markianos Kyriacos; McMullen Ivy; Pericak-Vance Margaret A; Silbergleit Arkadiy; Stein Lincoln; Wagner Michael; Wilson Alexander F; Winick Jeffrey D; Winn-Deen Emily S; Yamashiro Carl T; Cann Howard M; Lai Eric; Holden Arthur L
A 3.9-centimorgan-resolution human single-nucleotide polymorphism linkage map and screening set.
American journal of human genetics 2003;73(2):271-84.
2003: Clark Andrew G
Finding genes underlying risk of complex disease by linkage disequilibrium mapping.
Current opinion in genetics & development 2003;13(3):296-302.
2003: Lazzaro Brian P; Clark Andrew G
Molecular population genetics of inducible antibacterial peptide genes in Drosophila melanogaster.
Molecular biology and evolution 2003;20(6):914-23.
2003: Leabman Maya K; Huang Conrad C; DeYoung Joseph; Carlson Elaine J; Taylor Travis R; de la Cruz Melanie; Johns Susan J; Stryke Doug; Kawamoto Michiko; Urban Thomas J; Kroetz Deanna L; Ferrin Thomas E; Clark Andrew G; Risch Neil; Herskowitz Ira; Giacomini Kathleen M;
Natural variation in human membrane transporter genes reveals evolutionary and functional constraints.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(10):5896-901.
2003: Dermitzakis Emmanouil T; Bergman Casey M; Clark Andrew G
Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
Molecular biology and evolution 2003;20(5):703-14.
2003: Clark Andrew G
A slippery boundary.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(9):4971-2.
2003: Carvalho A Bernardo; Vibranovski Maria D; Carlson Joseph W; Celniker Susan E; Hoskins Roger A; Rubin Gerald M; Sutton Granger G; Adams Mark D; Myers Eugene W; Clark Andrew G
Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?
Genetica 2003;117(2-3):227-37.
2003: Jones Beatrix; Clark Andrew G
Bayesian sperm competition estimates.
Genetics 2003;163(3):1193-9.
2003: Mishmar Dan; Ruiz-Pesini Eduardo; Golik Pawel; Macaulay Vincent; Clark Andrew G; Hosseini Seyed; Brandon Martin; Easley Kirk; Chen Estella; Brown Michael D; Sukernik Rem I; Olckers Antonel; Wallace Douglas C
Natural selection shaped regional mtDNA variation in humans.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(1):171-6.
2003: Clark A G; Glanowski S; Nielsen R; Thomas P; Kejariwal A; Todd M J; Tanenbaum D M; Civello D; Lu F; Murphy B; Ferriera S; Wang G; Zheng X; White T J; Sninsky J J; Adams M D; Cargill M
Positive selection in the human genome inferred from human-chimp-mouse orthologous gene alignments.
Cold Spring Harbor symposia on quantitative biology 2003;68():471-7.
2003: Schwartz Russell; Halldórsson Bjarni V; Bafna Vineet; Clark Andrew G; Istrail Sorin
Robustness of inference of haplotype block structure.
Journal of computational biology : a journal of computational molecular cell biology 2003;10(1):13-9.
2002: Holt Robert A; Subramanian G Mani; Halpern Aaron; Sutton Granger G; Charlab Rosane; Nusskern Deborah R; Wincker Patrick; Clark Andrew G; Ribeiro José M C; Wides Ron; Salzberg Steven L; Loftus Brendan; Yandell Mark; Majoros William H; Rusch Douglas B; Lai Zhongwu; Kraft Cheryl L; Abril Josep F; Anthouard Veronique; Arensburger Peter; Atkinson Peter W; Baden Holly; de Berardinis Veronique; Baldwin Danita; Benes Vladimir; Biedler Jim; Blass Claudia; Bolanos Randall; Boscus Didier; Barnstead Mary; Cai Shuang; Center Angela; Chaturverdi Kabir; Christophides George K; Chrystal Mathew A; Clamp Michele; Cravchik Anibal; Curwen Val; Dana Ali; Delcher Art; Dew Ian; Evans Cheryl A; Flanigan Michael; Grundschober-Freimoser Anne; Friedli Lisa; Gu Zhiping; Guan Ping; Guigo Roderic; Hillenmeyer Maureen E; Hladun Susanne L; Hogan James R; Hong Young S; Hoover Jeffrey; Jaillon Olivier; Ke Zhaoxi; Kodira Chinnappa; Kokoza Elena; Koutsos Anastasios; Letunic Ivica; Levitsky Alex; Liang Yong; Lin Jhy-Jhu; Lobo Neil F; Lopez John R; Malek Joel A; McIntosh Tina C; Meister Stephan; Miller Jason; Mobarry Clark; Mongin Emmanuel; Murphy Sean D; O'Brochta David A; Pfannkoch Cynthia; Qi Rong; Regier Megan A; Remington Karin; Shao Hongguang; Sharakhova Maria V; Sitter Cynthia D; Shetty Jyoti; Smith Thomas J; Strong Renee; Sun Jingtao; Thomasova Dana; Ton Lucas Q; Topalis Pantelis; Tu Zhijian; Unger Maria F; Walenz Brian; Wang Aihui; Wang Jian; Wang Mei; Wang Xuelan; Woodford Kerry J; Wortman Jennifer R; Wu Martin; Yao Alison; Zdobnov Evgeny M; Zhang Hongyu; Zhao Qi; Zhao Shaying; Zhu Shiaoping C; Zhimulev Igor; Coluzzi Mario; della Torre Alessandra; Roth Charles W; Louis Christos; Kalush Francis; Mural Richard J; Myers Eugene W; Adams Mark D; Smith Hamilton O; Broder Samuel; Gardner Malcolm J; Fraser Claire M; Birney Ewan; Bork Peer; Brey Paul T; Venter J Craig; Weissenbach Jean; Kafatos Fotis C; Collins Frank H; Hoffman Stephen L
The genome sequence of the malaria mosquito Anopheles gambiae.
Science (New York, N.Y.) 2002;298(5591):129-49.
2002: Lazzaro Brian P; Sceurman Bonnielin K; Carney Susan L; Clark Andrew G
fRFLP and fAFLP: medium-throughput genotyping by fluorescently post-labeling restriction digestion.
BioTechniques 2002;33(3):539-40, 542, 545-6.
2002: Stengård Jari H; Clark Andrew G; Weiss Kenneth M; Kardia Sharon; Nickerson Deborah A; Salomaa Veikko; Ehnholm Christian; Boerwinkle Eric; Sing Charles F
Contributions of 18 additional DNA sequence variations in the gene encoding apolipoprotein E to explaining variation in quantitative measures of lipid metabolism.
American journal of human genetics 2002;71(3):501-17.
2002: Leabman Maya K; Huang Conrad C; Kawamoto Michiko; Johns Susan J; Stryke Douglas; Ferrin Thomas E; DeYoung Joseph; Taylor Travis; Clark Andrew G; Herskowitz Ira; Giacomini Kathleen M;
Polymorphisms in a human kidney xenobiotic transporter, OCT2, exhibit altered function.
Pharmacogenetics 2002;12(5):395-405.
2002: Fullerton Stephanie M; Clark Andrew G; Weiss Kenneth M; Taylor Scott L; Stengård Jari H; Salomaa Veikko; Boerwinkle Eric; Nickerson Deborah A
Sequence polymorphism at the human apolipoprotein AII gene ( APOA2): unexpected deficit of variation in an African-American sample.
Human genetics 2002;111(1):75-87.
2002: Clark Andrew G
Population genetics: malaria variorum.
Nature 2002;418(6895):283-5.
2002: Dermitzakis Emmanouil T; Clark Andrew G
Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover.
Molecular biology and evolution 2002;19(7):1114-21.
2002: Civetta Alberto; Waldrip-Dail Heidi M; Clark Andrew G
An introgression approach to mapping differences in mating success and sperm competitive ability in Drosophila simulans and D. sechellia.
Genetical research 2002;79(1):65-74.
2002: Clark A G
Sperm competition and the maintenance of polymorphism.
Heredity 2002;88(2):148-53.
2002: Weiss Kenneth M; Clark Andrew G
Linkage disequilibrium and the mapping of complex human traits.
Trends in genetics : TIG 2002;18(1):19-24.
2001: Carvalho A B; Dobo B A; Vibranovski M D; Clark A G
Identification of five new genes on the Y chromosome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(23):13225-30.
2001: Wei S H; Clark A G; Syvanen M
Identification and cloning of a key insecticide-metabolizing glutathione S-transferase (MdGST-6A) from a hyper insecticide-resistant strain of the housefly Musca domestica.
Insect biochemistry and molecular biology 2001;31(12):1145-53.
2001: Lazzaro B P; Clark A G
Evidence for recurrent paralogous gene conversion and exceptional allelic divergence in the Attacin genes of Drosophila melanogaster.
Genetics 2001;159(2):659-71.
2001: Rand D M; Clark A G; Kann L M
Sexually antagonistic cytonuclear fitness interactions in Drosophila melanogaster.
Genetics 2001;159(1):173-87.
2001: Clark A G
The search for meaning in noncoding DNA.
Genome research 2001;11(8):1319-20.
2001: Subrahmanyan L; Eberle M A; Clark A G; Kruglyak L; Nickerson D A
Sequence variation and linkage disequilibrium in the human T-cell receptor beta (TCRB) locus.
American journal of human genetics 2001;69(2):381-95.
2001: Tishkoff S A; Varkonyi R; Cahinhinan N; Abbes S; Argyropoulos G; Destro-Bisol G; Drousiotou A; Dangerfield B; Lefranc G; Loiselet J; Piro A; Stoneking M; Tagarelli A; Tagarelli G; Touma E H; Williams S M; Clark A G
Haplotype diversity and linkage disequilibrium at human G6PD: recent origin of alleles that confer malarial resistance.
Science (New York, N.Y.) 2001;293(5529):455-62.
2001: Swanson W J; Clark A G; Waldrip-Dail H M; Wolfner M F; Aquadro C F
Evolutionary EST analysis identifies rapidly evolving male reproductive proteins in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(13):7375-9.
2001: Fullerton S M; Bernardo Carvalho A; Clark A G
Local rates of recombination are positively correlated with GC content in the human genome.
Molecular biology and evolution 2001;18(6):1139-42.
2001: Dermitzakis E T; Clark A G
Differential selection after duplication in mammalian developmental genes.
Molecular biology and evolution 2001;18(4):557-62.
2001: Venter J C; Adams M D; Myers E W; Li P W; Mural R J; Sutton G G; Smith H O; Yandell M; Evans C A; Holt R A; Gocayne J D; Amanatides P; Ballew R M; Huson D H; Wortman J R; Zhang Q; Kodira C D; Zheng X H; Chen L; Skupski M; Subramanian G; Thomas P D; Zhang J; Gabor Miklos G L; Nelson C; Broder S; Clark A G; Nadeau J; McKusick V A; Zinder N; Levine A J; Roberts R J; Simon M; Slayman C; Hunkapiller M; Bolanos R; Delcher A; Dew I; Fasulo D; Flanigan M; Florea L; Halpern A; Hannenhalli S; Kravitz S; Levy S; Mobarry C; Reinert K; Remington K; Abu-Threideh J; Beasley E; Biddick K; Bonazzi V; Brandon R; Cargill M; Chandramouliswaran I; Charlab R; Chaturvedi K; Deng Z; Di Francesco V; Dunn P; Eilbeck K; Evangelista C; Gabrielian A E; Gan W; Ge W; Gong F; Gu Z; Guan P; Heiman T J; Higgins M E; Ji R R; Ke Z; Ketchum K A; Lai Z; Lei Y; Li Z; Li J; Liang Y; Lin X; Lu F; Merkulov G V; Milshina N; Moore H M; Naik A K; Narayan V A; Neelam B; Nusskern D; Rusch D B; Salzberg S; Shao W; Shue B; Sun J; Wang Z; Wang A; Wang X; Wang J; Wei M; Wides R; Xiao C; Yan C; Yao A; Ye J; Zhan M; Zhang W; Zhang H; Zhao Q; Zheng L; Zhong F; Zhong W; Zhu S; Zhao S; Gilbert D; Baumhueter S; Spier G; Carter C; Cravchik A; Woodage T; Ali F; An H; Awe A; Baldwin D; Baden H; Barnstead M; Barrow I; Beeson K; Busam D; Carver A; Center A; Cheng M L; Curry L; Danaher S; Davenport L; Desilets R; Dietz S; Dodson K; Doup L; Ferriera S; Garg N; Gluecksmann A; Hart B; Haynes J; Haynes C; Heiner C; Hladun S; Hostin D; Houck J; Howland T; Ibegwam C; Johnson J; Kalush F; Kline L; Koduru S; Love A; Mann F; May D; McCawley S; McIntosh T; McMullen I; Moy M; Moy L; Murphy B; Nelson K; Pfannkoch C; Pratts E; Puri V; Qureshi H; Reardon M; Rodriguez R; Rogers Y H; Romblad D; Ruhfel B; Scott R; Sitter C; Smallwood M; Stewart E; Strong R; Suh E; Thomas R; Tint N N; Tse S; Vech C; Wang G; Wetter J; Williams S; Williams M; Windsor S; Winn-Deen E; Wolfe K; Zaveri J; Zaveri K; Abril J F; Guigó R; Campbell M J; Sjolander K V; Karlak B; Kejariwal A; Mi H; Lazareva B; Hatton T; Narechania A; Diemer K; Muruganujan A; Guo N; Sato S; Bafna V; Istrail S; Lippert R; Schwartz R; Walenz B; Yooseph S; Allen D; Basu A; Baxendale J; Blick L; Caminha M; Carnes-Stine J; Caulk P; Chiang Y H; Coyne M; Dahlke C; Mays A; Dombroski M; Donnelly M; Ely D; Esparham S; Fosler C; Gire H; Glanowski S; Glasser K; Glodek A; Gorokhov M; Graham K; Gropman B; Harris M; Heil J; Henderson S; Hoover J; Jennings D; Jordan C; Jordan J; Kasha J; Kagan L; Kraft C; Levitsky A; Lewis M; Liu X; Lopez J; Ma D; Majoros W; McDaniel J; Murphy S; Newman M; Nguyen T; Nguyen N; Nodell M; Pan S; Peck J; Peterson M; Rowe W; Sanders R; Scott J; Simpson M; Smith T; Sprague A; Stockwell T; Turner R; Venter E; Wang M; Wen M; Wu D; Wu M; Xia A; Zandieh A; Zhu X
The sequence of the human genome.
Science (New York, N.Y.) 2001;291(5507):1304-51.
2000: Begun D J; Whitley P; Todd B L; Waldrip-Dail H M; Clark A G
Molecular population genetics of male accessory gland proteins in Drosophila.
Genetics 2000;156(4):1879-88.
2000: Civetta A; Clark A G
Correlated effects of sperm competition and postmating female mortality.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13162-5.
2000: Carvalho A B; Lazzaro B P; Clark A G
Y chromosomal fertility factors kl-2 and kl-3 of Drosophila melanogaster encode dynein heavy chain polypeptides.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(24):13239-44.
2000: Nickerson D A; Taylor S L; Fullerton S M; Weiss K M; Clark A G; Stengård J H; Salomaa V; Boerwinkle E; Sing C F
Sequence diversity and large-scale typing of SNPs in the human apolipoprotein E gene.
Genome research 2000;10(10):1532-45.
2000: Tishkoff S A; Pakstis A J; Stoneking M; Kidd J R; Destro-Bisol G; Sanjantila A; Lu R B; Deinard A S; Sirugo G; Jenkins T; Kidd K K; Clark A G
Short tandem-repeat polymorphism/alu haplotype variation at the PLAT locus: implications for modern human origins.
American journal of human genetics 2000;67(4):901-25.
2000: Fullerton S M; Clark A G; Weiss K M; Nickerson D A; Taylor S L; Stengârd J H; Salomaa V; Vartiainen E; Perola M; Boerwinkle E; Sing C F
Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism.
American journal of human genetics 2000;67(4):881-900.
2000: Clark A G; Dermitzakis E T; Civetta A
Nontransitivity of sperm precedence in Drosophila.
Evolution; international journal of organic evolution 2000;54(3):1030-5.
2000: Civetta A; Clark A G
Chromosomal effects on male and female components of sperm precedence in Drosophila.
Genetical research 2000;75(2):143-51.
2000: Dermitzakis E T; Masly J P; Waldrip H M; Clark A G
Non-Mendelian segregation of sex chromosomes in heterospecific Drosophila males.
Genetics 2000;154(2):687-94.
2000: Prout T; Clark A G
Seminal fluid causes temporarily reduced egg hatch in previously mated females.
Proceedings. Biological sciences / The Royal Society 2000;267(1439):201-3.
2000: Clark A G; Civetta A
Evolutionary biology. Protamine wars.
Nature 2000;403(6767):261, 263.
2000: Templeton A R; Clark A G; Weiss K M; Nickerson D A; Boerwinkle E; Sing C F
Recombinational and mutational hotspots within the human lipoprotein lipase gene.
American journal of human genetics 2000;66(1):69-83.
1999: Clark A G
The size distribution of homozygous segments in the human genome.
American journal of human genetics 1999;65(6):1489-92.
1999: Carvalho A B; Clark A G
Intron size and natural selection.
Nature 1999;401(6751):344.
1999: Clark A G
Chips for chimps.
Nature genetics 1999;22(2):119-20.
1999: Rieder M J; Taylor S L; Clark A G; Nickerson D A
Sequence variation in the human angiotensin converting enzyme.
Nature genetics 1999;22(1):59-62.
1999: Clark A G; Begun D J; Prout T
Female x male interactions in Drosophila sperm competition.
Science (New York, N.Y.) 1999;283(5399):217-20.
1998: Dermitzakis E T; Clark A G; Batargias C; Magoulas A; Zouros E
Negative covariance suggests mutation bias in a two-locus microsatellite system in the fish Sparus aurata.
Genetics 1998;150(4):1567-75.
1998: Clark A G; Fucito C D
Stress tolerance and metabolic response to stress in Drosophila melanogaster.
Heredity 1998;81 ( Pt 5)():514-27.
1998: Clark A G; Weiss K M; Nickerson D A; Taylor S L; Buchanan A; Stengård J; Salomaa V; Vartiainen E; Perola M; Boerwinkle E; Sing C F
Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase.
American journal of human genetics 1998;63(2):595-612.
1998: Nickerson D A; Taylor S L; Weiss K M; Clark A G; Hutchinson R G; Stengård J; Salomaa V; Vartiainen E; Boerwinkle E; Sing C F
DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene.
Nature genetics 1998;19(3):233-40.
1998: Clark A G; Begun D J
Female genotypes affect sperm displacement in Drosophila.
Genetics 1998;149(3):1487-93.
1998: Spencer H G; Feldman M W; Clark A G
Genetic conflicts, multiple paternity and the evolution of genomic imprinting.
Genetics 1998;148(2):893-904.
1998: Clark A G
Mutation-selection balance with multiple alleles.
Genetica 1998;102-103(1-6):41-7.
1997: Thomas G H; Newbern E C; Korte C C; Bales M A; Muse S V; Clark A G; Kiehart D P
Intragenic duplication and divergence in the spectrin superfamily of proteins.
Molecular biology and evolution 1997;14(12):1285-95.
1997: Clark A G; Wang L
Molecular population genetics of Drosophila immune system genes.
Genetics 1997;147(2):713-24.
1997: Clark A G; Wang L
Epistasis in measured genotypes: Drosophila P-element insertions.
Genetics 1997;147(1):157-63.
1997: Clark A G
Neutral behavior of shared polymorphism.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(15):7730-4.
1997: Muse S V; Clark A G; Thomas G H
Comparisons of the nucleotide substitution process among repetitive segments of the alpha- and beta-spectrin genes.
Journal of molecular evolution 1997;44(5):492-500.
1997: Clark A G
Stress and metabolic regulation in Drosophila.
EXS 1997;83():117-32.
1996: Prout T; Clark A G
Polymorphism in genes that influence sperm displacement.
Genetics 1996;144(1):401-8.
1996: Clark A G; Leicht B G; Muse S V
Length variation and secondary structure of introns in the Mlc1 gene in six species of Drosophila.
Molecular biology and evolution 1996;13(3):471-82.
1995: Goldstein D B; Clark A G
Microsatellite variation in North American populations of Drosophila melanogaster.
Nucleic acids research 1995;23(19):3882-6.
1995: Wang L; Clark A G
Physiological genetics of the response to a high-sucrose diet by Drosophila melanogaster.
Biochemical genetics 1995;33(5-6):149-65.
1995: Clark A G; Wang L; Hulleberg T
Spontaneous mutation rate of modifiers of metabolism in Drosophila.
Genetics 1995;139(2):767-79.
1995: Clark A G; Wang L; Hulleberg T
P-element-induced variation in metabolic regulation in Drosophila.
Genetics 1995;139(1):337-48.
1995: Clark A G; Aguadé M; Prout T; Harshman L G; Langley C H
Variation in sperm displacement and its association with accessory gland protein loci in Drosophila melanogaster.
Genetics 1995;139(1):189-201.
1995: Leicht B G; Muse S V; Hanczyc M; Clark A G
Constraints on intron evolution in the gene encoding the myosin alkali light chain in Drosophila.
Genetics 1995;139(1):299-308.
1995: Clark A G; Guadalupe R N
Probing the evolution of senescence in Drosophila melanogaster with P-element tagging.
Genetica 1995;96(3):225-34.
1995: Clark A G; Hamilton J F; Chambers G K
Inference of population subdivision from the VNTR distributions of New Zealanders.
Genetica 1995;96(1-2):37-49.
1994: Clark A G
Invasion and maintenance of a gene duplication.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(8):2950-4.
1994: Clark A G; Silveria S; Meyers W; Langley C H
Nature screen: an efficient method for screening natural populations of Drosophila for targeted P-element insertions.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(2):719-22.
1993: Clark A G; Lanigan C M
Prospects for estimating nucleotide divergence with RAPDs.
Molecular biology and evolution 1993;10(5):1096-111.
1993: Leicht B G; Lyckegaard E M; Benedict C M; Clark A G
Conservation of alternative splicing and genomic organization of the myosin alkali light-chain (Mlc1) gene among Drosophila species.
Molecular biology and evolution 1993;10(4):769-90.
1992: Clark A G; Whittam T S
Sequencing errors and molecular evolutionary analysis.
Molecular biology and evolution 1992;9(4):744-52.
1991: Merriwether D A; Clark A G; Ballinger S W; Schurr T G; Soodyall H; Jenkins T; Sherry S T; Wallace D C
The structure of human mitochondrial DNA variation.
Journal of molecular evolution 1991;33(6):543-55.
1991: Clark A G; Kao T H
Excess nonsynonymous substitution of shared polymorphic sites among self-incompatibility alleles of Solanaceae.
Proceedings of the National Academy of Sciences of the United States of America 1991;88(21):9823-7.
1991: Clark A G
Mutation-selection balance and metabolic control theory.
Genetics 1991;129(3):909-23.
1991: Clark A G; Szumski F M; Lyckegaard E M
Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates.
Genetical research 1991;58(1):7-13.
1991: Lyckegaard E M; Clark A G
Evolution of ribosomal RNA gene copy number on the sex chromosomes of Drosophila melanogaster.
Molecular biology and evolution 1991;8(4):458-74.
1991: Krane D E; Clark A G; Cheng J F; Hardison R C
Subfamily relationships and clustering of rabbit C repeats.
Molecular biology and evolution 1991;8(1):1-30.
1990: Ioerger T R; Clark A G; Kao T H
Polymorphism at the self-incompatibility locus in Solanaceae predates speciation.
Proceedings of the National Academy of Sciences of the United States of America 1990;87(24):9732-5.
1990: Clark A G; Szumski F M; Bell K A; Keith L E; Houtz S; Merriwether D A
Direct and correlated responses to artificial selection on lipid and glycogen contents in Drosophila melanogaster.
Genetical research 1990;56(1):49-56.
1990: Clark A G
Two tests of Y chromosomal variation in male fertility of Drosophila melanogaster.
Genetics 1990;125(3):527-34.
1990: Clark A G
Inference of haplotypes from PCR-amplified samples of diploid populations.
Molecular biology and evolution 1990;7(2):111-22.
1989: Clark A G
Causes and consequences of variation in energy storage in Drosophila melanogaster.
Genetics 1989;123(1):131-44.
1989: Clark A G; Keith L E
Rapid enzyme kinetic assays of individual Drosophila and comparisons of field-caught D. melanogaster and D. simulans.
Biochemical genetics 1989;27(5-6):263-77.
1989: Lyckegaard E M; Clark A G
Ribosomal DNA and Stellate gene copy number variation on the Y chromosome of Drosophila melanogaster.
Proceedings of the National Academy of Sciences of the United States of America 1989;86(6):1944-8.
1988: Clark A G
The evolution of the Y chromosome with X-Y recombination.
Genetics 1988;119(3):711-20.
1988: Clark A G; Keith L E
Variation among extracted lines of Drosophila melanogaster in triacylglycerol and carbohydrate storage.
Genetics 1988;119(3):595-607.
1988: Clark A G; Lyckegaard E M
Natural selection with nuclear and cytoplasmic transmission. III. Joint analysis of segregation and mtDNA in Drosophila melanogaster.
Genetics 1988;118(3):471-81.
1987: Clark A G
Neutrality tests of highly polymorphic restriction-fragment-length polymorphisms.
American journal of human genetics 1987;41(5):948-56.

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