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David Rocke

Research Profile

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Gene Expression Profiling

Disorders

Concepts & Ideas

Activities & Behaviors

Computer Simulation

Occupations

Physiology

Phenomena

Radiation, Ionizing

Anatomy

Keratinocytes

Co-author Network

Publications

TOP 3
Robert H Rice; Blythe P Durbin-Johnson; Brett R Winters; David Rocke
Chicken corneocyte cross-linked proteome.
Joseph A Kitterman; Rolf Morhart; Jeannie Peeper; Robert J Pignolo; David Rocke; Eileen M Shore; Jennifer Snow; Jonathan B Strober; Amanda Cali; Patricia L R Delai; Lixin Kan; Frederick S Kaplan
Neurological symptoms in individuals with fibrodysplasia ossificans progressiva.
Reem Yunis; Shiquan Wu; Huguette Albrecht; Karen M Kalanetra; David Rocke
Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation.

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All Publications

2013: Robert H Rice; Blythe P Durbin-Johnson; Brett R Winters; David Rocke
Chicken corneocyte cross-linked proteome.
Journal of proteome research 2013;12(2):771-6.
2012: Joseph A Kitterman; Rolf Morhart; Jeannie Peeper; Robert J Pignolo; David Rocke; Eileen M Shore; Jennifer Snow; Jonathan B Strober; Amanda Cali; Patricia L R Delai; Lixin Kan; Frederick S Kaplan
Neurological symptoms in individuals with fibrodysplasia ossificans progressiva.
Journal of neurology 2012;259(12):2636-43.
2012: Reem Yunis; Shiquan Wu; Huguette Albrecht; Karen M Kalanetra; David Rocke
Genomic characterization of a three-dimensional skin model following exposure to ionizing radiation.
Journal of radiation research 2012;53(6):860-75.
2012: Robert H Rice; David Rocke; Katie M Bradshaw; Blythe P Durbin-Johnson; Richard A Eigenheer; Brett Phinney; John P Sundberg
Differentiating inbred mouse strains from each other and those with single gene mutations using hair proteomics.
PloS one 2012;7(12):e51956.
2012: Monika Ray; Xiucui Chen; Reem Yunis; David Rocke
Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.
BMC genomics 2012;13():190.
2012: Heather M Fritz; David Rocke; Kerry R Buchholz; Xiucui Chen; Patricia A Conrad; Blythe Durbin-Johnson; John C Boothroyd
Transcriptomic analysis of toxoplasma development reveals many novel functions and structures specific to sporozoites and oocysts.
PloS one 2012;7(2):e29998.
2012: Huguette Albrecht; Karen M Kalanetra; Thomas R Stevenson; Reem Yunis; Shiquan Wu; Blythe Durbin-Johnson; Rachel Chen; David Rocke
Transcriptional response of ex vivo human skin to ionizing radiation: comparison between low- and high-dose effects.
Radiation research 2012;177(1):69-83.
2011: Kerry R Buchholz; Xiucui Chen; Patricia A Conrad; Blythe Durbin-Johnson; David J Ferguson; Heather M Fritz; David Rocke; John C Boothroyd
Identification of tissue cyst wall components by transcriptome analysis of in vivo and in vitro Toxoplasma gondii bradyzoites.
Eukaryotic cell 2011;10(12):1637-47.
2011: Patrick S Romano; Xiaowei D Yang; James P Marcin; David Rocke; Jian J Dai; Madan Dharmar; Richard Kravitz; Zhongmin Li
Impact of public reporting of coronary artery bypass graft surgery performance data on market share, mortality, and patient selection.
Medical care 2011;49(12):1118-25.
2011: Alaa M Afify; Stacey Tate; Blythe Durbin-Johnson; David Rocke; Thomas Konia
Expression of CD44s and CD44v6 in lung cancer and their correlation with prognostic factors.
The International journal of biological markers 2011;26(1):50-7.
2010: Frederick S Kaplan; Michael A Zasloff; Joseph A Kitterman; Eileen M Shore; Charles C Hong; David Rocke
Early mortality and cardiorespiratory failure in patients with fibrodysplasia ossificans progressiva.
The Journal of bone and joint surgery. American volume 2010;92(3):686-91.
2010: Jill L Maron; Kirby L Johnson; David Rocke; Michael G Cohen; Albert J Liley; Diana W Bianchi
Neonatal salivary analysis reveals global developmental gene expression changes in the premature infant.
Clinical chemistry 2010;56(3):409-16.
2010: Donald A Barkauskas; David Rocke
A general-purpose baseline estimation algorithm for spectroscopic data.
Analytica chimica acta 2010;657(2):191-7.
2009: Robert H Rice; David Rocke; Hua-Sheng Tsai; Kathleen A Silva; Young Jin Lee; John P Sundberg
Distinguishing mouse strains by proteomic analysis of pelage hair.
The Journal of investigative dermatology 2009;129(9):2120-5.
2009: Donald A Barkauskas; Scott R Kronewitter; Carlito B Lebrilla; David Rocke
Analysis of MALDI FT-ICR mass spectrometry data: a time series approach.
Analytica chimica acta 2009;648(2):207-14.
2009: C A Wheeler; S R Jafarzadeh; David Rocke; Alan J Grodzinsky
IGF-1 does not moderate the time-dependent transcriptional patterns of key homeostatic genes induced by sustained compression of bovine cartilage.
Osteoarthritis and cartilage / OARS, Osteoarthritis Research Society 2009;17(7):944-52.
2009: Blythe A Corbett; Laura J Constantine; Robert L Hendren; David Rocke; Sally Ozonoff
Examining executive functioning in children with autism spectrum disorder, attention deficit hyperactivity disorder and typical development.
Psychiatry research 2009;166(2-3):210-22.
2009: Susanne R Berglund; Alison R Santana; Dan Li; Robert H Rice; David Rocke; Zelanna Goldberg
Proteomic analysis of low dose arsenic and ionizing radiation exposure on keratinocytes.
Proteomics 2009;9(7):1925-38.
2009: Donald A Barkauskas; Hyun Joo An; Scott R Kronewitter; Maria Lorna de Leoz; Helen K Chew; Ralph W deVere White; Gary S Leiserowitz; Suzanne Miyamoto; Carlito B Lebrilla; David Rocke
Detecting glycan cancer biomarkers in serum samples using MALDI FT-ICR mass spectrometry data.
Bioinformatics (Oxford, England) 2009;25(2):251-7.
2009: Raja K Sivamani; Christine E Pullar; Catherine G Manabat-Hidalgo; David Rocke; Richard C Carlsen; David G Greenhalgh; R Rivkah Isseroff
Stress-mediated increases in systemic and local epinephrine impair skin wound healing: potential new indication for beta blockers.
PLoS medicine 2009;6(1):e12.
2009: Baoqing Li; Dan Li; Derick H Lau; D Gregory Farwell; Quang Luu; David Rocke; Kathleen Newman; Jean Courquin; James A Purdy; Allen M Chen
Clinical-dosimetric analysis of measures of dysphagia including gastrostomy-tube dependence among head and neck cancer patients treated definitively by intensity-modulated radiotherapy with concurrent chemotherapy.
Radiation oncology (London, England) 2009;4():52.
2009: Gilles Clermont; Charles Auffray; Yves Moreau; David Rocke; Daniel Dalevi; Devdatt Dubhashi; Dana R. Marshall; Peter Raasch; Frank Dehne; Paolo Provero; Jesper Tegner; Bruce Aronow; Michael A Langston; Mikael Benson
Bridging the gap between systems biology and medicine.
Genome medicine 2009;1(9):88.
2009: Federico Martinelli; Sandra L Uratsu; Russell L Reagan; Ying Chen; David Tricoli; Oliver Fiehn; David Rocke; Charles S Gasser; Abhaya M Dandekar
Gene regulation in parthenocarpic tomato fruit.
Journal of experimental botany 2009;60(13):3873-90.
2008: Marike Zwienenberg-Lee; Jonathan Hartman; Nancy Rudisill; Lori Kennedy Madden; Karen Smith; Joseph Eskridge; David Newell; Bon Verweij; Ross Bullock; Andrew Baker; William M Coplin; Robert Mericle; Jian Dai; David Rocke; J Paul Muizelaar
Effect of prophylactic transluminal balloon angioplasty on cerebral vasospasm and outcome in patients with Fisher grade III subarachnoid hemorrhage: results of a phase II multicenter, randomized, clinical trial.
Stroke; a journal of cerebral circulation 2008;39(6):1759-65.
2008: James P Marcin; Zhongmin Li; Richard Kravitz; Jian J Dai; David Rocke; Patrick S Romano
The CABG surgery volume-outcome relationship: temporal trends and selection effects in California, 1998-2004.
Health services research 2008;43(1 Pt 1):174-92.
2008: Zhongmin Li; Richard Kravitz; James P Marcin; Patrick S Romano; David Rocke; Timothy A Denton; Ralph G Brindis; Jian Dai; Ezra A Amsterdam
Survival enhancing indications for coronary artery bypass graft surgery in California.
BMC health services research 2008;8():257.
2008: Ki-Hong Jung; Chris Dardick; Laura E Bartley; Peijian Cao; Jirapa Phetsom; Patrick Canlas; Young-Su Seo; Michael Shultz; Shu Ouyang; Qiaoping Yuan; Bryan C Frank; Eugene Ly; Li Zheng; Yi Jia; An-Ping Hsia; Kyungsook An; Hui-Hsien Chou; David Rocke; Geun Cheol Lee; Patrick S Schnable; Gynheung An; C Robin Buell; Pamela C Ronald
Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy.
PloS one 2008;3(10):e3337.
2008: Yuanxin Xi; David Rocke
Baseline correction for NMR spectroscopic metabolomics data analysis.
BMC bioinformatics 2008;9():324.
2008: Ruixiao Lu; Geun-Cheol Lee; Michael Shultz; Chris Dardick; Kihong Jung; Jirapa Phetsom; Yi Jia; Robert H Rice; Zelanna Goldberg; Patrick S Schnable; Pamela Ronald; David Rocke
Assessing probe-specific dye and slide biases in two-color microarray data.
BMC bioinformatics 2008;9():314.
2008: Susanne R Berglund; David Rocke; Jian Dai; Chad W Schwietert; Alison Santana; Robin L Stern; Joerg Lehmann; Christine Hartmann Siantar; Zelanna Goldberg
Transient genome-wide transcriptional response to low-dose ionizing radiation in vivo in humans.
International journal of radiation oncology, biology, physics 2008;70(1):229-34.
2007: Blythe A Corbett; A B Kantor; H Schulman; W L Walker; Lisa Lit; Paul Ashwood; David Rocke; Frank R Sharp
A proteomic study of serum from children with autism showing differential expression of apolipoproteins and complement proteins.
Molecular psychiatry 2007;12(3):292-306.
2007: Jingjing Ye; Hao Liu; Crystal Kirmiz; Carlito B Lebrilla; David Rocke
On the analysis of glycomics mass spectrometry data via the regularized area under the ROC curve.
BMC bioinformatics 2007;8():477.
2006: Miguel A Rea; Lei Zhou; Qin Qin; Yann Barrandon; Karen W Easley; Sarah F Gungner; Marjorie A Phillips; William S Holland; Paul H Gumerlock; David Rocke; Robert H Rice
Spontaneous immortalization of human epidermal cells with naturally elevated telomerase.
The Journal of investigative dermatology 2006;126(11):2507-15.
2006: Hyun Joo An; John S Tillinghast; David L Woodruff; David Rocke; Carlito B Lebrilla
A new computer program (GlycoX) to determine simultaneously the glycosylation sites and oligosaccharide heterogeneity of glycoproteins.
Journal of proteome research 2006;5(10):2800-8.
2006: Zelanna Goldberg; David Rocke; Chad W Schwietert; Susanne R Berglund; Alison Santana; Angela Jones; Joerg Lehmann; Robin Stern; Ruixiao Lu; Christine Hartmann Siantar
Human in vivo dose-response to controlled, low-dose low linear energy transfer ionizing radiation exposure.
Clinical cancer research : an official journal of the American Association for Cancer Research 2006;12(12):3723-9.
2006: Joerg Lehmann; Robin L Stern; Thomas P Daly; David Rocke; Chad W Schwietert; Gregory E Jones; Michelle L Arnold; Christine L Hartmann Siantar; Zelanna Goldberg
Dosimetry for quantitative analysis of the effects of low-dose ionizing radiation in radiation therapy patients.
Radiation research 2006;165(2):240-7.
2006: Jian J Dai; Linh Lieu; David Rocke
Dimension reduction for classification with gene expression microarray data.
Statistical applications in genetics and molecular biology 2006;5():Article6.
2005: Joseph A Kitterman; Sharon Kantanie; David Rocke; Frederick S Kaplan
Iatrogenic harm caused by diagnostic errors in fibrodysplasia ossificans progressiva.
Pediatrics 2005;116(5):e654-61.
2005: Lei Zhou; David Rocke
An expression index for Affymetrix GeneChips based on the generalized logarithm.
Bioinformatics (Oxford, England) 2005;21(21):3983-9.
2005: David Rocke; Zelanna Goldberg; Chad Schweitert; Alison Santana
A method for detection of differential gene expression in the presence of inter-individual variability in response.
Bioinformatics (Oxford, England) 2005;21(21):3990-2.
2005: Kristina Abel; David Rocke; Barinderpal Chohan; Linda Fritts; Christopher J Miller
Temporal and anatomic relationship between virus replication and cytokine gene expression after vaginal simian immunodeficiency virus infection.
Journal of virology 2005;79(19):12164-72.
2004: David Rocke
Design and analysis of experiments with high throughput biological assay data.
Seminars in cell & developmental biology 2004;15(6):703-13.
2004: Richard F Scarlett; David Rocke; Sharon Kantanie; Jean B Patel; Eileen M Shore; Frederick S Kaplan
Influenza-like viral illnesses and flare-ups of fibrodysplasia ossificans progressiva.
Clinical orthopaedics and related research 2004;(423):275-9.
2004: Blythe Durbin; David Rocke
Variance-stabilizing transformations for two-color microarrays.
Bioinformatics (Oxford, England) 2004;20(5):660-7.
2004: Parul V Purohit; David Rocke; Mark R Viant; David L Woodruff
Discrimination models using variance-stabilizing transformation of metabolomic NMR data.
Omics : a journal of integrative biology 2004;8(2):118-30.
2003: Sue C Geller; Jeffrey P Gregg; Paul J Hagerman; David Rocke
Transformation and normalization of oligonucleotide microarray data.
Bioinformatics (Oxford, England) 2003;19(14):1817-23.
2003: Parul V Purohit; David Rocke
Discriminant models for high-throughput proteomics mass spectrometer data.
Proteomics 2003;3(9):1699-703.
2003: David Rocke; Blythe Durbin; Machelle Wilson; Henry D Kahn
Modeling uncertainty in the measurement of low-level analytes in environmental analysis.
Ecotoxicology and environmental safety 2003;56(1):78-92.
2003: Joseph A Caruso; B Klaue; B Michalke; David Rocke
Group assessment: elemental speciation.
Ecotoxicology and environmental safety 2003;56(1):32-44.
2003: Blythe Durbin; David Rocke
Estimation of transformation parameters for microarray data.
Bioinformatics (Oxford, England) 2003;19(11):1360-7.
2003: David Rocke; Blythe Durbin
Approximate variance-stabilizing transformations for gene-expression microarray data.
Bioinformatics (Oxford, England) 2003;19(8):966-72.
2002: Yihua Zhao; Benjamin P C Chen; Hui Miao; Suli Yuan; Yi-Shuan Li; Yingli Hu; David Rocke; Shu Chien
Improved significance test for DNA microarray data: temporal effects of shear stress on endothelial genes.
Physiological genomics 2002;12(1):1-11.
2002: Danh V Nguyen; David Rocke
Partial least squares proportional hazard regression for application to DNA microarray survival data.
Bioinformatics (Oxford, England) 2002;18(12):1625-32.
2002: Geoffrey Jones; David Rocke
Multivariate survival analysis with doubly-censored data: application to the assessment of Accutane treatment for fibrodysplasia ossificans progressiva.
Statistics in medicine 2002;21(17):2547-62.
2002: Danh V Nguyen; David Rocke
Multi-class cancer classification via partial least squares with gene expression profiles.
Bioinformatics (Oxford, England) 2002;18(9):1216-26.
2002: Blythe Durbin; J S Hardin; D M Hawkins; David Rocke
A variance-stabilizing transformation for gene-expression microarray data.
Bioinformatics (Oxford, England) 2002;18 Suppl 1():S105-10.
2002: Danh V Nguyen; David Rocke
Tumor classification by partial least squares using microarray gene expression data.
Bioinformatics (Oxford, England) 2002;18(1):39-50.
2001: G Jones; David Rocke
Analyte identification in multivariate calibration.
Biometrics 2001;57(2):571-6.
2001: David Rocke; Blythe Durbin
A model for measurement error for gene expression arrays.
Journal of computational biology : a journal of computational molecular cell biology 2001;8(6):557-69.
2000: Bruce Leistikow; DC Martin; J Jacobs; David Rocke; K Noderer
Smoking as a risk factor for accident death: a meta-analysis of cohort studies.
Accident; analysis and prevention 2000;32(3):397-405.
1998: Bruce Leistikow; DC Martin; J Jacobs; David Rocke
Smoking as a risk factor for injury death: a meta-analysis of cohort studies.
Preventive medicine 1998;27(6):871-8.
1998: J R Sawyer; JJ Klimkiewicz; Joseph P Iannotti; David Rocke
Mechanism for superior subluxation of the glenohumeral joint in fibrodysplasia ossificans progressiva.
Clinical orthopaedics and related research 1998;(346):130-3.
1998: Michael Zasloff; David Rocke; L J Crofford; GV Hahn; Frederick S Kaplan
Treatment of patients who have fibrodysplasia ossificans progressiva with isotretinoin.
Clinical orthopaedics and related research 1998;(346):121-9.
1998: David L Glaser; David Rocke; Frederick S Kaplan
Catastrophic falls in patients who have fibrodysplasia ossificans progressiva.
Clinical orthopaedics and related research 1998;(346):110-6.
1998: F Kaplan; J Sawyer; Stephanie A Connors; K Keough; Eileen M Shore; F Gannon; Dale Glaser; David Rocke; Michael Zasloff; J Folkman
Urinary basic fibroblast growth factor. A biochemical marker for preosseous fibroproliferative lesions in patients with fibrodysplasia ossificans progressiva.
Clinical orthopaedics and related research 1998;(346):59-65.
1996: G Jones; M Wortberg; S B Kreissig; Bruce D Hammock; David Rocke
Application of the bootstrap to calibration experiments.
Analytical chemistry 1996;68(5):763-70.
1996: WT Luchetti; R B Cohen; GV Hahn; David Rocke; Mark L Helpin; M Zasloff; Frederick S Kaplan
Severe restriction in jaw movement after routine injection of local anesthetic in patients who have fibrodysplasia ossificans progressiva.
Oral surgery, oral medicine, oral pathology, oral radiology, and endodontics 1996;81(1):21-5.
1995: T F Lanchoney; R B Cohen; David Rocke; Michael Zasloff; Frederick S Kaplan
Permanent heterotopic ossification at the injection site after diphtheria-tetanus-pertussis immunizations in children who have fibrodysplasia ossificans progressiva.
The Journal of pediatrics 1995;126(5 Pt 1):762-4.
1995: L M Kauvar; Deborah L Higgins; Hugo Villar; J R Sportsman; A Engqvist-Goldstein; R Bukar; K E Bauer; H Dilley; David Rocke
Predicting ligand binding to proteins by affinity fingerprinting.
Chemistry & biology 1995;2(2):107-18.
1994: G Jones; M Wortberg; S B Kreissig; D S Bunch; Shirley J Gee; Bruce D Hammock; David Rocke
Extension of the four-parameter logistic model for ELISA to multianalyte analysis.
Journal of immunological methods 1994;177(1-2):1-7.
1994: David Rocke; M Zasloff; J Peeper; R B Cohen; Frederick S Kaplan
Age- and joint-specific risk of initial heterotopic ossification in patients who have fibrodysplasia ossificans progressiva.
Clinical orthopaedics and related research 1994;(301):243-8.
1991: David Rocke
Robustness and balance in the mixed model.
Biometrics 1991;47(1):303-9.
1990: D S Bunch; David Rocke; R O Harrison
Statistical design of ELISA protocols.
Journal of immunological methods 1990;132(2):247-54.
1984: David Rocke
On testing for bioequivalence.
Biometrics 1984;40(1):225-30.
1983: G W DOwns; David Rocke
Designed experiments for classification problems.
The Journal of the Operational Research Society 1983;34(11):1069-77.