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Tong Zhu

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Living Beings

Physiology

Concepts & Ideas

Gene Expression Profiling

Devices

Oligonucleotide Array Sequence Analysis

Genes & Molecular Sequences

Chemicals & Drugs

Disorders

Plant Diseases

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Co-Publications
Name
25
Chang, Hur-Song
8
Chen, Wenqiong
7
Wang, Xun
5
Wang, Xun
5
Rothstein, Steven
5
Glazebrook, Jane
5
Bi, Yong-Mei
5
Keim, Paul
4
Kreps, Joel
3
Casal, Jorge
3
Tepperman, James
3
Zou, Guangzhou
3
Provart, Nicholas
3
Quail, Peter
3
Luan, Sheng

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Publications

TOP 3
Bi Yong-Mei; Kant Surya; Clark Joseph; Gidda Satinder; Ming Feng; Xu Jianyao; Rochon Amanda; Shelp Barry J; Hao Lixin; Zhao Rong; Mullen Robert T; Zhu Tong; Rothstein Steven J
Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.
Kant Surya; Bi Yong-Mei; Zhu Tong; Rothstein Steven J
SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice.
Beatty Perrin H; Shrawat Ashok K; Carroll Rebecka T; Zhu Tong; Good Allen G
Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase.

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All Publications

2009: Bi Yong-Mei; Kant Surya; Clark Joseph; Gidda Satinder; Ming Feng; Xu Jianyao; Rochon Amanda; Shelp Barry J; Hao Lixin; Zhao Rong; Mullen Robert T; Zhu Tong; Rothstein Steven J
Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling.
Plant, cell & environment 2009;32(12):1749-60.
2009: Kant Surya; Bi Yong-Mei; Zhu Tong; Rothstein Steven J
SAUR39, a small auxin-up RNA gene, acts as a negative regulator of auxin synthesis and transport in rice.
Plant physiology 2009;151(2):691-701.
2009: Beatty Perrin H; Shrawat Ashok K; Carroll Rebecka T; Zhu Tong; Good Allen G
Transcriptome analysis of nitrogen-efficient rice over-expressing alanine aminotransferase.
Plant biotechnology journal 2009;7(6):562-76.
2009: Wan Yongfang; Underwood Claudia; Toole Geraldine; Skeggs Peter; Zhu Tong; Leverington Michelle; Griffiths Simon; Wheeler Tim; Gooding Mike; Poole Rebecca; Edwards Keith J; Gezan Salvador; Welham Sue; Snape John; Mills E N Clare; Mitchell Rowan A C; Shewry Peter R
A novel transcriptomic approach to identify candidate genes for grain quality traits in wheat.
Plant biotechnology journal 2009;7(5):401-10.
2009: Xie Weibo; Chen Ying; Zhou Gang; Wang Lei; Zhang Chengjun; Zhang Jianwei; Xiao Jinghua; Zhu Tong; Zhang Qifa
Single feature polymorphisms between two rice cultivars detected using a median polish method.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2009;119(1):151-64.
2009: Pawlowski Wojciech P; Wang Chung-Ju Rachel; Golubovskaya Inna N; Szymaniak Jessica M; Shi Liang; Hamant Olivier; Zhu Tong; Harper Lisa; Sheridan William F; Cande W Zacheus
Maize AMEIOTIC1 is essential for multiple early meiotic processes and likely required for the initiation of meiosis.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(9):3603-8.
2009: Chae Lee; Sudat Sylvia; Dudoit Sandrine; Zhu Tong; Luan Sheng
Diverse transcriptional programs associated with environmental stress and hormones in the Arabidopsis receptor-like kinase gene family.
Molecular plant 2009;2(1):84-107.
2009: Sim Sung-Chur; Robbins Matthew D; Chilcott Charles; Zhu Tong; Francis David M
Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding.
BMC genomics 2009;10():466.
2008: Ghassemian Majid; Lutes Jason; Chang Hur-Song; Lange Iris; Chen Wenqiong; Zhu Tong; Wang Xun; Lange B Markus
Abscisic acid-induced modulation of metabolic and redox control pathways in Arabidopsis thaliana.
Phytochemistry 2008;69(17):2899-911.
2008: Ghiglione Hernán O; Gonzalez Fernanda G; Serrago Román; Maldonado Sara B; Chilcott Charles; Curá José A; Miralles Daniel J; Zhu Tong; Casal Jorge J
Autophagy regulated by day length determines the number of fertile florets in wheat.
The Plant journal : for cell and molecular biology 2008;55(6):1010-24.
2007: Peng Mingsheng; Bi Yong-Mei; Zhu Tong; Rothstein Steven J
Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA.
Plant molecular biology 2007;65(6):775-97.
2007: Ge Xiaochun; Li Guo-Jing; Wang Sheng-Bing; Zhu Huifen; Zhu Tong; Wang Xun; Xia Yiji
AtNUDT7, a negative regulator of basal immunity in Arabidopsis, modulates two distinct defense response pathways and is involved in maintaining redox homeostasis.
Plant physiology 2007;145(1):204-15.
2007: Cai Xiaoning; Ballif Jenny; Endo Saori; Davis Elizabeth; Liang Mingxiang; Chen Dong; DeWald Daryll; Kreps Joel; Zhu Tong; Wu Yajun
A putative CCAAT-binding transcription factor is a regulator of flowering timing in Arabidopsis.
Plant physiology 2007;145(1):98-105.
2007: Sugio Akiko; Yang Bing; Zhu Tong; White Frank F
Two type III effector genes of Xanthomonas oryzae pv. oryzae control the induction of the host genes OsTFIIAgamma1 and OsTFX1 during bacterial blight of rice.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(25):10720-5.
2007: Zhu Tong; Salmeron John
High-definition genome profiling for genetic marker discovery.
Trends in plant science 2007;12(5):196-202.
2007: Eulgem Thomas; Tsuchiya Tokuji; Wang Xiao-Jun; Beasley Britt; Cuzick Alayne; Tör Mahmut; Zhu Tong; McDowell John M; Holub Eric; Dangl Jeffery L
EDM2 is required for RPP7-dependent disease resistance in Arabidopsis and affects RPP7 transcript levels.
The Plant journal : for cell and molecular biology 2007;49(5):829-39.
2007: Coneva Viktoriya; Zhu Tong; Colasanti Joseph
Expression differences between normal and indeterminate1 maize suggest downstream targets of ID1, a floral transition regulator in maize.
Journal of experimental botany 2007;58(13):3679-93.
2007: Bi Yong-Mei; Wang Rong-Lin; Zhu Tong; Rothstein Steven J
Global transcription profiling reveals differential responses to chronic nitrogen stress and putative nitrogen regulatory components in Arabidopsis.
BMC genomics 2007;8():281.
2006: Habu Yoshiki; Mathieu Olivier; Tariq Muhammad; Probst Aline V; Smathajitt Chotika; Zhu Tong; Paszkowski Jerzy
Epigenetic regulation of transcription in intermediate heterochromatin.
EMBO reports 2006;7(12):1279-84.
2006: Singer Tatjana; Fan Yiping; Chang Hur-Song; Zhu Tong; Hazen Samuel P; Briggs Steven P
A high-resolution map of Arabidopsis recombinant inbred lines by whole-genome exon array hybridization.
PLoS genetics 2006;2(9):e144.
2006: Zeng Li-Rong; Vega-Sánchez Miguel E; Zhu Tong; Wang Guo-Liang
Ubiquitination-mediated protein degradation and modification: an emerging theme in plant-microbe interactions.
Cell research 2006;16(5):413-26.
2006: Ghassemian Majid; Lutes Jason; Tepperman James M; Chang Hur-Song; Zhu Tong; Wang Xun; Quail Peter H; Lange B Markus
Integrative analysis of transcript and metabolite profiling data sets to evaluate the regulation of biochemical pathways during photomorphogenesis.
Archives of biochemistry and biophysics 2006;448(1-2):45-59.
2006: Jiang Keni; Zhang Shibo; Lee Stanley; Tsai George; Kim Kyungpil; Huang Haiyan; Chilcott Charles; Zhu Tong; Feldman Lewis J
Transcription profile analyses identify genes and pathways central to root cap functions in maize.
Plant molecular biology 2006;60(3):343-63.
2006: Clarke Joseph D; Zhu Tong
Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives.
The Plant journal : for cell and molecular biology 2006;45(4):630-50.
2006: Bethke Paul C; Hwang Yong-Sic; Zhu Tong; Jones Russell L
Global patterns of gene expression in the aleurone of wild-type and dwarf1 mutant rice.
Plant physiology 2006;140(2):484-98.
2006: Zhu Tong; Chang Sherman H; Gil Pedro
Target preparation for DNA microarray hybridization.
Methods in molecular biology (Clifton, N.J.) 2006;323():349-57.
2005: Bi Yong-Mei; Zhang Yu; Signorelli Tara; Zhao Rong; Zhu Tong; Rothstein Steven
Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity.
The Plant journal : for cell and molecular biology 2005;44(4):680-92.
2005: Mazzella María Agustina; Arana María Verónica; Staneloni Roberto J; Perelman Susana; Rodriguez Batiller María J; Muschietti Jorge; Cerdán Pablo D; Chen Kunhua; Sánchez Rodolfo A; Zhu Tong; Chory Joanne; Casal Jorge J
Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light.
The Plant cell 2005;17(9):2507-16.
2005: Devoto Alessandra; Ellis Christine; Magusin Andreas; Chang Hur-Song; Chilcott Charles; Zhu Tong; Turner John G
Expression profiling reveals COI1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions.
Plant molecular biology 2005;58(4):497-513.
2005: Hwang Yong-Sic; Bethke Paul C; Cheong Yong Hwa; Chang Hur-Song; Zhu Tong; Jones Russell L
A gibberellin-regulated calcineurin B in rice localizes to the tonoplast and is implicated in vacuole function.
Plant physiology 2005;138(3):1347-58.
2005: Güimil Sonia; Chang Hur-Song; Zhu Tong; Sesma Ane; Osbourn Anne; Roux Christophe; Ioannidis Vassilios; Oakeley Edward J; Docquier Mylène; Descombes Patrick; Briggs Steven P; Paszkowski Uta
Comparative transcriptomics of rice reveals an ancient pattern of response to microbial colonization.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(22):8066-70.
2005: Hazen Samuel P; Pathan M Safiullah; Sanchez Alma; Baxter Ivan; Dunn Molly; Estes Bram; Chang Hur-Song; Zhu Tong; Kreps Joel A; Nguyen Henry T
Expression profiling of rice segregating for drought tolerance QTLs using a rice genome array.
Functional & integrative genomics 2005;5(2):104-16.
2005: Chen Wenqiong J; Chang Sherman H; Hudson Matthew E; Kwan Wai-King; Li Jingqiu; Estes Bram; Knoll Daniel; Shi Liang; Zhu Tong
Contribution of transcriptional regulation to natural variations in Arabidopsis.
Genome biology 2005;6(4):R32.
2004: Chen Wenqiong J; Zhu Tong
Networks of transcription factors with roles in environmental stress response.
Trends in plant science 2004;9(12):591-6.
2004: Moggs Jonathan G; Tinwell Helen; Spurway Tracey; Chang Hur-Song; Pate Ian; Lim Fei Ling; Moore David J; Soames Anthony; Stuckey Ruth; Currie Richard; Zhu Tong; Kimber Ian; Ashby John; Orphanides George
Phenotypic anchoring of gene expression changes during estrogen-induced uterine growth.
Environmental health perspectives 2004;112(16):1589-606.
2004: Verhagen Bas W M; Glazebrook Jane; Zhu Tong; Chang Hur-Song; van Loon L C; Pieterse Corné M J
The transcriptome of rhizobacteria-induced systemic resistance in arabidopsis.
Molecular plant-microbe interactions : MPMI 2004;17(8):895-908.
2004: Hass Claudia; Lohrmann Jens; Albrecht Verónica; Sweere Uta; Hummel Florian; Yoo Sang Dong; Hwang Ildoo; Zhu Tong; Schäfer Eberhard; Kudla Jörg; Harter Klaus
The response regulator 2 mediates ethylene signalling and hormone signal integration in Arabidopsis.
The EMBO journal 2004;23(16):3290-302.
2004: Eulgem Thomas; Weigman Victor J; Chang Hur-Song; McDowell John M; Holub Eric B; Glazebrook Jane; Zhu Tong; Dangl Jeffery L
Gene expression signatures from three genetically separable resistance gene signaling pathways for downy mildew resistance.
Plant physiology 2004;135(2):1129-44.
2004: Tepperman James M; Hudson Matthew E; Khanna Rajnish; Zhu Tong; Chang Sherman H; Wang Xun; Quail Peter H
Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation.
The Plant journal : for cell and molecular biology 2004;38(5):725-39.
2003: Perelman Susana; Mazzella María Agustina; Muschietti Jorge; Zhu Tong; Casal Jorge J
Finding unexpected patterns in microarray data.
Plant physiology 2003;133(4):1717-25.
2003: Wintz Henri; Fox Tama; Wu Ying-Ying; Feng Victoria; Chen Wenqiong; Chang Hur-Song; Zhu Tong; Vulpe Chris
Expression profiles of Arabidopsis thaliana in mineral deficiencies reveal novel transporters involved in metal homeostasis.
The Journal of biological chemistry 2003;278(48):47644-53.
2003: Zhu Tong
Global analysis of gene expression using GeneChip microarrays.
Current opinion in plant biology 2003;6(5):418-25.
2003: Anderson Abraham; Hudson Matthew; Chen Wenqiong; Zhu Tong
Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data.
BMC genomics 2003;4(1):26.
2003: Provart Nicholas J; Gil Pedro; Chen Wenqiong; Han Bin; Chang Hur-Song; Wang Xun; Zhu Tong
Gene expression phenotypes of Arabidopsis associated with sensitivity to low temperatures.
Plant physiology 2003;132(2):893-906.
2003: van Wees Saskia C M; Chang Hur-Song; Zhu Tong; Glazebrook Jane
Characterization of the early response of Arabidopsis to Alternaria brassicicola infection using expression profiling.
Plant physiology 2003;132(2):606-17.
2003: Laule Oliver; Fürholz Andreas; Chang Hur-Song; Zhu Tong; Wang Xun; Heifetz Peter B; Gruissem Wilhelm; Lange Markus
Crosstalk between cytosolic and plastidial pathways of isoprenoid biosynthesis in Arabidopsis thaliana.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6866-71.
2003: Glazebrook Jane; Chen Wenqiong; Estes Bram; Chang Hur-Song; Nawrath Christiane; Métraux Jean-Pierre; Zhu Tong; Katagiri Fumiaki
Topology of the network integrating salicylate and jasmonate signal transduction derived from global expression phenotyping.
The Plant journal : for cell and molecular biology 2003;34(2):217-28.
2003: Borevitz Justin O; Liang David; Plouffe David; Chang Hur-Song; Zhu Tong; Weigel Detlef; Berry Charles C; Winzeler Elizabeth; Chory Joanne
Large-scale identification of single-feature polymorphisms in complex genomes.
Genome research 2003;13(3):513-23.
2003: Moon Yong-Hwan; Chen Lingjing; Pan Rong Long; Chang Hur-Song; Zhu Tong; Maffeo Daniel M; Sung Z Renee
EMF genes maintain vegetative development by repressing the flower program in Arabidopsis.
The Plant cell 2003;15(3):681-93.
2003: Tao Yi; Xie Zhiyi; Chen Wenqiong; Glazebrook Jane; Chang Hur-Song; Han Bin; Zhu Tong; Zou Guangzhou; Katagiri Fumiaki
Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae.
The Plant cell 2003;15(2):317-30.
2003: Zhu Tong; Budworth Paul; Chen Wenqiong; Provart Nicholas; Chang Hur-Song; Guimil Sonia; Su Wenpei; Estes Bram; Zou Guangzhou; Wang Xun
Transcriptional control of nutrient partitioning during rice grain filling.
Plant biotechnology journal 2003;1(1):59-70.
2003: Whitham Steven A; Quan Sheng; Chang Hur-Song; Cooper Bret; Estes Bram; Zhu Tong; Wang Xun; Hou Yu-Ming
Diverse RNA viruses elicit the expression of common sets of genes in susceptible Arabidopsis thaliana plants.
The Plant journal : for cell and molecular biology 2003;33(2):271-83.
2002: Kreps Joel A; Wu Yajun; Chang Hur-Song; Zhu Tong; Wang Xun; Harper Jeff F
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress.
Plant physiology 2002;130(4):2129-41.
2002: Ulm Roman; Ichimura Kazuya; Mizoguchi Tsuyoshi; Peck Scott C; Zhu Tong; Wang Xun; Shinozaki Kazuo; Paszkowski Jerzy
Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1.
The EMBO journal 2002;21(23):6483-93.
2002: Moseyko Nick; Zhu Tong; Chang Hur-Song; Wang Xun; Feldman Lewis J
Transcription profiling of the early gravitropic response in Arabidopsis using high-density oligonucleotide probe microarrays.
Plant physiology 2002;130(2):720-8.
2002: Cheong Yong Hwa; Chang Hur-Song; Gupta Rajeev; Wang Xun; Zhu Tong; Luan Sheng
Transcriptional profiling reveals novel interactions between wounding, pathogen, abiotic stress, and hormonal responses in Arabidopsis.
Plant physiology 2002;129(2):661-77.
2002: Chen Wenqiong; Provart Nicholas J; Glazebrook Jane; Katagiri Fumiaki; Chang Hur-Song; Eulgem Thomas; Mauch Felix; Luan Sheng; Zou Guangzhou; Whitham Steve A; Budworth Paul R; Tao Yi; Xie Zhiyi; Chen Xi; Lam Steve; Kreps Joel A; Harper Jeffery F; Si-Ammour Azzedine; Mauch-Mani Brigitte; Heinlein Manfred; Kobayashi Kappei; Hohn Thomas; Dangl Jeffery L; Wang Xun; Zhu Tong
Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses.
The Plant cell 2002;14(3):559-74.
2002: Li Bi-Yu; Kwan Wai King; Turgeon Gillian; Wu Jianguo; Wang Xun; Li E; Zhu Tong; Shi Liang
Analysis of differential gene expression by ligation specificity-based transcript profiling.
Omics : a journal of integrative biology 2002;6(2):175-85.
2001: Tepperman J M; Zhu T; Chang H S; Wang X; Quail P H
Multiple transcription-factor genes are early targets of phytochrome A signaling.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(16):9437-42.
2000: Harmer S L; Hogenesch J B; Straume M; Chang H S; Han B; Zhu T; Wang X; Kreps J A; Kay S A
Orchestrated transcription of key pathways in Arabidopsis by the circadian clock.
Science (New York, N.Y.) 2000;290(5499):2110-3.
2000: Zhu T; Wang X
Large-scale profiling of the Arabidopsis transcriptome.
Plant physiology 2000;124(4):1472-6.
2000: Zhu T; Mettenburg K; Peterson D J; Tagliani L; Baszczynski C L
Engineering herbicide-resistant maize using chimeric RNA/DNA oligonucleotides.
Nature biotechnology 2000;18(5):555-8.
1999: Zhu T; Peterson D J; Tagliani L; St Clair G; Baszczynski C L; Bowen B
Targeted manipulation of maize genes in vivo using chimeric RNA/DNA oligonucleotides.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(15):8768-73.
1997: Morgante M; Jurman I; Shi L; Zhu T; Keim P; Rafalski J A
The STR120 satellite DNA of soybean: organization, evolution and chromosomal specificity.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 1997;5(6):363-73.
1996: Zhu T; Shi I; Funke R P; Gresshoff P M; Keim P
Characterization and application of soybean YACs to molecular cytogenetics.
Molecular & general genetics : MGG 1996;252(4):483-8.
1996: Shi L; Zhu T; Morgante M; Rafalski J A; Keim P
Soybean chromosome painting: a strategy for somatic cytogenetics.
The Journal of heredity 1996;87(4):308-13.
1995: Vahedian M; Shi L; Zhu T; Okimoto R; Danna K; Keim P
Genomic organization and evolution of the soybean SB92 satellite sequence.
Plant molecular biology 1995;29(4):857-62.
1994: Zhu T; Schupp J M; Oliphant A; Keim P
Hypomethylated sequences: characterization of the duplicate soybean genome.
Molecular & general genetics : MGG 1994;244(6):638-45.
1992: Zhu T; Mogensen H L; Smith S E
Heritable paternal cytoplasmic organelles in alfalfa sperm cells: ultrastructural reconstruction and quantitative cytology.
European journal of cell biology 1992;59(1):211-8.

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