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Stephen Smith

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Gwenaëlle Douaud; Achim Gass; Paul M Matthews; Ricarda A L Menke; Andreas U Monsch; Anil Rao; M Sollberger; Brandon Whitcher; Giovanna Zamboni; Stephen Smith
Brain microstructure reveals early abnormalities more than two years prior to clinical progression from mild cognitive impairment to Alzheimer's disease.
Stephen Smith; Mark W Woolrich; P A Bandettini; Timothy E J Behrens; O David; Karl J Friston; T Liu; Karla L Miller; T E Nichols
The danger of systematic bias in group-level FMRI-lag-based causality estimation.
N Filippini; Klaus P. Ebmeier; Bradley MacIntosh; A J Trachtenberg; Giovanni B Frisoni; Gordon K Wilcock; Christian F Beckmann; Stephen Smith; Paul Matthews; Clare E Mackay
Differential effects of the APOE genotype on brain function across the lifespan.

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All Publications

2013: Gwenaëlle Douaud; Achim Gass; Paul M Matthews; Ricarda A L Menke; Andreas U Monsch; Anil Rao; M Sollberger; Brandon Whitcher; Giovanna Zamboni; Stephen Smith
Brain microstructure reveals early abnormalities more than two years prior to clinical progression from mild cognitive impairment to Alzheimer's disease.
The Journal of neuroscience : the official journal of the Society for Neuroscience 2013;33(5):2147-55.
2012: Stephen Smith; Mark W Woolrich; P A Bandettini; Timothy E J Behrens; O David; Karl J Friston; T Liu; Karla L Miller; T E Nichols
The danger of systematic bias in group-level FMRI-lag-based causality estimation.
NeuroImage 2012;59(2):1228-9.
2011: N Filippini; Klaus P. Ebmeier; Bradley MacIntosh; A J Trachtenberg; Giovanni B Frisoni; Gordon K Wilcock; Christian F Beckmann; Stephen Smith; Paul Matthews; Clare E Mackay
Differential effects of the APOE genotype on brain function across the lifespan.
NeuroImage 2011;54(1):602-10.
2010: Antonio Giorgio; Kate E Watkins; M Chadwick; S James; L Winmill; G Douaud; Nicola de Stefano; Paul Matthews; Stephen Smith; Heidi Johansen-Berg; A C James
Longitudinal changes in grey and white matter during adolescence.
NeuroImage 2010;49(1):94-103.
2009: Gwenaëlle Douaud; Clare Mackay; Jesper Andersson; Susan James; Digby Quested; Manaan Kar Ray; Julie Connell; Neil Roberts; Timothy J Crow; Paul Matthews; Stephen Smith; Anthony James
Schizophrenia delays and alters maturation of the brain in adolescence.
Brain : a journal of neurology 2009;132(Pt 9):2437-48.
2009: Nicola Filippini; Bradley MacIntosh; Morgan G Hough; Guy M Goodwin; Giovanni B Frisoni; Stephen Smith; Paul Matthews; Christian F Beckmann; Clare E Mackay
Distinct patterns of brain activity in young carriers of the APOE-epsilon4 allele.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(17):7209-14.
2009: Gholamreza Salimi-Khorshidi; Stephen Smith; John R Keltner; Tor D Wager; Thomas E Nichols
Meta-analysis of neuroimaging data: a comparison of image-based and coordinate-based pooling of studies.
NeuroImage 2009;45(3):810-23.
2009: Jessica S Damoiseaux; Stephen Smith; Menno P Witter; Ernesto Sanz Arigita; Frederik Barkhof; Philip scheltens; Cornelis Stam; Mojtaba Zarei; Serge A R B Rombouts
White matter tract integrity in aging and Alzheimer's disease.
Human brain mapping 2009;30(4):1051-9.
2009: Mojtaba Zarei; Jeske S Damoiseaux; Ciro Morgese; Christian F Beckmann; Stephen Smith; Paul Matthews; Philip scheltens; Serge A R B Rombouts; Frederik Barkhof
Regional white matter integrity differentiates between vascular dementia and Alzheimer disease.
Stroke; a journal of cerebral circulation 2009;40(3):773-9.
2009: Mark W Woolrich; Saad Jbabdi; Brian Patenaude; Michael Chappell; Salima Makni; timothy wayne behrens; Christian F Beckmann; Mark Jenkinson; Stephen Smith
Bayesian analysis of neuroimaging data in FSL.
NeuroImage 2009;45(1 Suppl):S173-86.
2009: Olga Ciccarelli; Timothy E Behrens; Heidi Johansen-Berg; Kevin Talbot; Richard W Orrell; Robin S Howard; Rita G Nunes; David H Miller; Paul Matthews; Alan J Thompson; Stephen Smith
Investigation of white matter pathology in ALS and PLS using tract-based spatial statistics.
Human brain mapping 2009;30(2):615-24.
2009: Stephen Smith; Thomas E Nichols
Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference.
NeuroImage 2009;44(1):83-98.
2009: Serge A R B Rombouts; Jessica S Damoiseaux; Rutger Goekoop; Frederik Barkhof; Philip scheltens; Stephen Smith; Christian F Beckmann
Model-free group analysis shows altered BOLD FMRI networks in dementia.
Human brain mapping 2009;30(1):256-66.
2008: Natalie L Voets; Morgan G Hough; Gwenaelle Douaud; Paul Matthews; Anthony James; Louise Winmill; Paula Webster; Stephen Smith
Evidence for abnormalities of cortical development in adolescent-onset schizophrenia.
NeuroImage 2008;43(4):665-75.
2008: Antonio Giorgio; Marco Battaglini; Stephen Smith; Nicola de Stefano
Brain atrophy assessment in multiple sclerosis: importance and limitations.
Neuroimaging clinics of North America 2008;18(4):675-86, xi.
2008: A Vogiatzoglou; Helga Refsum; Carole Johnston; Stephen Smith; Kevin M Bradley; Celeste A de Jager; Marc M Budge; A David Smith
Vitamin B12 status and rate of brain volume loss in community-dwelling elderly.
Neurology 2008;71(11):826-32.
2008: R Bosnell; C Wegner; Zsigmond Tamas Kincses; Tijmen Korteweg; Federica Agosta; Olga Ciccarelli; Nicola de Stefano; A Gass; J Hirsch; Heidi Johansen-Berg; L Kappos; Frederik Barkhof; L Mancini; F Manfredonia; S Marino; David H Miller; Xavier Montalban; Jacqueline Palace; M Rocca; Christian Enzinger; Stefan Ropele; A Rovira; Stephen Smith; A Thompson; J Thornton; T Yousry; B Whitcher; Massimo Filippi; Paul Matthews
Reproducibility of fMRI in the clinical setting: implications for trial designs.
NeuroImage 2008;42(2):603-10.
2008: J S Damoiseaux; C F Beckmann; E J Sanz Arigita; F Barkhof; Philip scheltens; Cornelis Stam; Stephen Smith; S A R B Rombouts
Reduced resting-state brain activity in the "default network" in normal aging.
Cerebral cortex (New York, N.Y. : 1991) 2008;18(8):1856-64.
2008: Marco Battaglini; Stephen Smith; Susanna Brogi; Nicola de Stefano
Enhanced brain extraction improves the accuracy of brain atrophy estimation.
NeuroImage 2008;40(2):583-9.
2008: Kate E Watkins; Stephen Smith; Steve Davis; Peter Howell
Structural and functional abnormalities of the motor system in developmental stuttering.
Brain : a journal of neurology 2008;131(Pt 1):50-9.
2008: Antonio Giorgio; Kate E Watkins; G Douaud; A C James; S James; Nicola de Stefano; Paul Matthews; Stephen Smith; Heidi Johansen-Berg
Changes in white matter microstructure during adolescence.
NeuroImage 2008;39(1):52-61.
2007: jasperse bas; Hugo Vrenken; Ernesto Sanz Arigita; Vincent de Groot; Stephen Smith; Chris H Polman; Frederik Barkhof
Regional brain atrophy development is related to specific aspects of clinical dysfunction in multiple sclerosis.
NeuroImage 2007;38(3):529-37.
2007: jasperse bas; Paola Valsasina; Veronica Neacsu; Dirk L Knol; Nicola De Stefano; Christian Enzinger; Stephen Smith; Stefan Ropele; Tijmen Korteweg; Antonio Giorgio; Valerie Anderson; Chris H Polman; Massimo Filippi; David H Miller; Marco Rovaris; Frederik Barkhof; Hugo Vrenken
Intercenter agreement of brain atrophy measurement in multiple sclerosis patients using manually-edited SIENA and SIENAX.
Journal of magnetic resonance imaging : JMRI 2007;26(4):881-5.
2007: Karla L Miller; Stephen Smith; Peter Jezzard; Graham C Wiggins; Christopher J Wiggins
Signal and noise characteristics of SSFP FMRI: a comparison with GRE at multiple field strengths.
NeuroImage 2007;37(4):1227-36.
2007: Gwenaëlle Douaud; Stephen Smith; Mark Jenkinson; timothy wayne behrens; Heidi Johansen-Berg; John Vickers; Susan James; Natalie L Voets; Kate Watkins; Paul Matthews; Anthony James
Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia.
Brain : a journal of neurology 2007;130(Pt 9):2375-86.
2007: Stephen Smith; Anil Rao; Nicola De Stefano; Mark Jenkinson; Jonathan M Schott; Paul Matthews; Nick C Fox
Longitudinal and cross-sectional analysis of atrophy in Alzheimer's disease: cross-validation of BSI, SIENA and SIENAX.
NeuroImage 2007;36(4):1200-6.
2007: Sarah Cader; Heidi Johansen-Berg; Marzena Wylezinska; Jacqueline Palace; Timothy E J Behrens; Stephen Smith; Paul Matthews
Discordant white matter N-acetylasparate and diffusion MRI measures suggest that chronic metabolic dysfunction contributes to axonal pathology in multiple sclerosis.
NeuroImage 2007;36(1):19-27.
2007: Nicola de Stefano; Marco Battaglini; Stephen Smith
Measuring brain atrophy in multiple sclerosis.
Journal of neuroimaging : official journal of the American Society of Neuroimaging 2007;17 Suppl 1():10S-15S.
2007: Heidi Johansen-Berg; Valeria Della-Maggiore; Timothy E J Behrens; Stephen Smith; Tomás Paus
Integrity of white matter in the corpus callosum correlates with bimanual co-ordination skills.
NeuroImage 2007;36 Suppl 2():T16-21.
2007: Stephen Smith; Heidi Johansen-Berg; Mark Jenkinson; Daniel Rueckert; Thomas E Nichols; Karla L Miller; Matthew D Robson; Derek K Jones; Johannes C Klein; Andreas Joachim Bartsch; Timothy E J Behrens
Acquisition and voxelwise analysis of multi-subject diffusion data with tract-based spatial statistics.
Nature protocols 2007;2(3):499-503.
2007: Andreas Joachim Bartsch; György Homola; Armin Biller; Stephen Smith; Heinz-Gerd Weijers; Gerhard A Wiesbeck; Mark Jenkinson; Nicola De Stefano; Laszlo Solymosi; Martin Bendszus
Manifestations of early brain recovery associated with abstinence from alcoholism.
Brain : a journal of neurology 2007;130(Pt 1):36-47.
2007: Stephen Smith; Mark Jenkinson; Christian F Beckmann; Karla Miller; Mark W Woolrich
Meaningful design and contrast estimability in FMRI.
NeuroImage 2007;34(1):127-36.
2006: J S Damoiseaux; Serge A R B Rombouts; F Barkhof; Philip scheltens; Cornelis Stam; Stephen Smith; C F Beckmann
Consistent resting-state networks across healthy subjects.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(37):13848-53.
2006: Stephen Smith; Mark Jenkinson; Heidi Johansen-Berg; Daniel Rueckert; Thomas E Nichols; Clare E Mackay; Kate E Watkins; Olga Ciccarelli; M Zaheer Cader; Paul Matthews; Timothy E J Behrens
Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data.
NeuroImage 2006;31(4):1487-505.
2006: Christian F Beckmann; Mark Jenkinson; Mark W Woolrich; Timothy E J Behrens; David E Flitney; Joseph T Devlin; Stephen Smith
Applying FSL to the FIAC data: model-based and model-free analysis of voice and sentence repetition priming.
Human brain mapping 2006;27(5):380-91.
2006: Timothy E J Behrens; Mark Jenkinson; Matthew D Robson; Stephen Smith; Heidi Johansen-Berg
A consistent relationship between local white matter architecture and functional specialisation in medial frontal cortex.
NeuroImage 2006;30(1):220-7.
2006: M De Luca; Christian F Beckmann; Nicola de Stefano; Paul Matthews; Stephen Smith
fMRI resting state networks define distinct modes of long-distance interactions in the human brain.
NeuroImage 2006;29(4):1359-67.
2006: Karla L Miller; Stephen Smith; Peter Jezzard; John Pauly
High-resolution FMRI at 1.5T using balanced SSFP.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 2006;55(1):161-70.
2005: Rami K Niazy; Christian F Beckmann; Gian Domenico Iannetti; J Michael Brady; Stephen Smith
Removal of FMRI environment artifacts from EEG data using optimal basis sets.
NeuroImage 2005;28(3):720-37.
2005: Sean P David; Marcus R Munafò; Heidi Johansen-Berg; Stephen Smith; Robert D Rogers; Paul Matthews; Robert T Walton
Ventral striatum/nucleus accumbens activation to smoking-related pictorial cues in smokers and nonsmokers: a functional magnetic resonance imaging study.
Biological psychiatry 2005;58(6):488-94.
2005: Christian F Beckmann; Marilena DeLuca; Joseph T Devlin; Stephen Smith
Investigations into resting-state connectivity using independent component analysis.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2005;360(1457):1001-13.
2005: Christian F Beckmann; Stephen Smith
Tensorial extensions of independent component analysis for multisubject FMRI analysis.
NeuroImage 2005;25(1):294-311.
2005: Stephen Smith; Christian F Beckmann; Narender Ramnani; Mark W Woolrich; Peter R Bannister; Mark Jenkinson; Paul Matthews; david mcgonigle
Variability in fMRI: a re-examination of inter-session differences.
Human brain mapping 2005;24(3):248-57.
2005: Mark W Woolrich; Timothy E J Behrens; Christian F Beckmann; Stephen Smith
Mixture models with adaptive spatial regularization for segmentation with an application to FMRI data.
IEEE transactions on medical imaging 2005;24(1):1-11.
2005: Heidi Johansen-Berg; Timothy E J Behrens; Emma Sillery; Olga Ciccarelli; Alan J Thompson; Stephen Smith; Paul Matthews
Functional-anatomical validation and individual variation of diffusion tractography-based segmentation of the human thalamus.
Cerebral cortex (New York, N.Y. : 1991) 2005;15(1):31-9.
2004: Heidi Johansen-Berg; Timothy E J Behrens; Matthew D Robson; Ivana Drobnjak; Matthew F S Rushworth; J Michael Brady; Stephen Smith; D J Higham; Paul Matthews
Changes in connectivity profiles define functionally distinct regions in human medial frontal cortex.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(36):13335-40.
2004: Mark W Woolrich; Timothy E J Behrens; Stephen Smith
Constrained linear basis sets for HRF modelling using Variational Bayes.
NeuroImage 2004;21(4):1748-61.
2004: Mark W Woolrich; Timothy E J Behrens; Christian F Beckmann; Mark Jenkinson; Stephen Smith
Multilevel linear modelling for FMRI group analysis using Bayesian inference.
NeuroImage 2004;21(4):1732-47.
2004: Mark W Woolrich; Mark Jenkinson; J Michael Brady; Stephen Smith
Fully Bayesian spatio-temporal modeling of FMRI data.
IEEE transactions on medical imaging 2004;23(2):213-31.
2004: Christian F Beckmann; Stephen Smith
Probabilistic independent component analysis for functional magnetic resonance imaging.
IEEE transactions on medical imaging 2004;23(2):137-52.
2004: Stephen Smith
Overview of fMRI analysis.
The British journal of radiology 2004;77 Spec No 2():S167-75.
2004: Stephen Smith; Mark Jenkinson; Mark W Woolrich; Christian F Beckmann; Timothy E J Behrens; Heidi Johansen-Berg; Peter R Bannister; Marilena De Luca; Ivana Drobnjak; David E Flitney; Rami K Niazy; James Saunders; John Vickers; Yongyue Zhang; Nicola de Stefano; J Michael Brady; Paul Matthews
Advances in functional and structural MR image analysis and implementation as FSL.
NeuroImage 2004;23 Suppl 1():S208-19.
2003: Allyson M M Parry; Richard B Scott; Jacqueline Palace; Stephen Smith; Paul Matthews
Potentially adaptive functional changes in cognitive processing for patients with multiple sclerosis and their acute modulation by rivastigmine.
Brain : a journal of neurology 2003;126(Pt 12):2750-60.
2003: Timothy E J Behrens; Mark W Woolrich; Mark Jenkinson; Heidi Johansen-Berg; Rita G Nunes; Stuart Clare; Paul Matthews; J Michael Brady; Stephen Smith
Characterization and propagation of uncertainty in diffusion-weighted MR imaging.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 2003;50(5):1077-88.
2003: Christian F Beckmann; Mark Jenkinson; Stephen Smith
General multilevel linear modeling for group analysis in FMRI.
NeuroImage 2003;20(2):1052-63.
2003: Timothy E J Behrens; Heidi Johansen-Berg; Mark W Woolrich; Stephen Smith; Claudia Wheeler-Kingshott; Philip A Boulby; Gareth Barker; Emma Sillery; K Sheehan; Olga Ciccarelli; Alan J Thompson; J Michael Brady; Paul Matthews
Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging.
Nature neuroscience 2003;6(7):750-7.
2003: Jonathan Marchini; Stephen Smith
On bias in the estimation of autocorrelations for fMRI voxel time-series analysis.
NeuroImage 2003;18(1):83-90.
2002: Heidi Johansen-Berg; Helen Dawes; Claire Guy; Stephen Smith; Derick T Wade; Paul Matthews
Correlation between motor improvements and altered fMRI activity after rehabilitative therapy.
Brain : a journal of neurology 2002;125(Pt 12):2731-42.
2002: Shimin Fu; Yiping Chen; Stephen Smith; Susan Iversen; Paul Matthews
Effects of word form on brain processing of written Chinese.
NeuroImage 2002;17(3):1538-48.
2002: Stephen Smith
Fast robust automated brain extraction.
Human brain mapping 2002;17(3):143-55.
2002: Yiping Chen; Shimin Fu; Susan D Iversen; Stephen Smith; Paul Matthews
Testing for dual brain processing routes in reading: a direct contrast of chinese character and pinyin reading using FMRI.
Journal of cognitive neuroscience 2002;14(7):1088-98.
2002: Stephen Smith; Yongyue Zhang; Mark Jenkinson; Jacqueline Chen; Paul Matthews; Antonio Federico; Nicola de Stefano
Accurate, robust, and automated longitudinal and cross-sectional brain change analysis.
NeuroImage 2002;17(1):479-89.
2002: A Parry; Stuart Clare; Mark Jenkinson; Stephen Smith; Jacqueline Palace; Paul Matthews
White matter and lesion T1 relaxation times increase in parallel and correlate with disability in multiple sclerosis.
Journal of neurology 2002;249(9):1279-86.
2002: Valerie L Stevenson; Stephen Smith; Paul Matthews; David H Miller; Alan J Thompson
Monitoring disease activity and progression in primary progressive multiple sclerosis using MRI: sub-voxel registration to identify lesion changes and to detect cerebral atrophy.
Journal of neurology 2002;249(2):171-7.
2002: Susanna Bantick; Richard G Wise; Alexander Ploghaus; Stuart Clare; Stephen Smith; Irene Tracey
Imaging how attention modulates pain in humans using functional MRI.
Brain : a journal of neurology 2002;125(Pt 2):310-9.
2001: Mark W Woolrich; BD Ripley; Michael Brady; Stephen Smith
Temporal autocorrelation in univariate linear modeling of FMRI data.
NeuroImage 2001;14(6):1370-86.
2001: Nikos Evangelou; D Konz; Margaret M Esiri; Stephen Smith; Jacqueline Palace; Paul Matthews
Size-selective neuronal changes in the anterior optic pathways suggest a differential susceptibility to injury in multiple sclerosis.
Brain : a journal of neurology 2001;124(Pt 9):1813-20.
2001: Stephen Smith; N De Stefano; M Jenkinson; Paul Matthews
Normalized accurate measurement of longitudinal brain change.
Journal of computer assisted tomography 2001;25(3):466-75.
2000: Nikos Evangelou; D Konz; Margaret M Esiri; Stephen Smith; Jacqueline Palace; Paul Matthews
Regional axonal loss in the corpus callosum correlates with cerebral white matter lesion volume and distribution in multiple sclerosis.
Brain : a journal of neurology 2000;123 ( Pt 9)():1845-9.
2000: M Lee; H Reddy; Heidi Johansen-Berg; Sarah Pendlebury; Mark Jenkinson; Stephen Smith; Jacqueline Palace; Paul Matthews
The motor cortex shows adaptive functional changes to brain injury from multiple sclerosis.
Annals of neurology 2000;47(5):606-13.
2000: Nikos Evangelou; Margaret M Esiri; Stephen Smith; Jacqueline Palace; Paul Matthews
Quantitative pathological evidence for axonal loss in normal appearing white matter in multiple sclerosis.
Annals of neurology 2000;47(3):391-5.
2000: R Pineiro; Sarah Pendlebury; Stephen Smith; David E Flitney; Andrew M Blamire; Peter Styles; Paul Matthews
Relating MRI changes to motor deficit after ischemic stroke by segmentation of functional motor pathways.
Stroke; a journal of cerebral circulation 2000;31(3):672-9.
1999: M A Lee; Stephen Smith; Jacqueline Palace; Sridar Narayanan; N Silver; L Minicucci; M Filippi; D H Miller; Douglas L Arnold; Paul Matthews
Spatial mapping of T2 and gadolinium-enhancing T1 lesion volumes in multiple sclerosis: evidence for distinct mechanisms of lesion genesis?
Brain : a journal of neurology 1999;122 ( Pt 7)():1261-70.
1998: M A Lee; Stephen Smith; Jacqueline Palace; Paul Matthews
Defining multiple sclerosis disease activity using MRI T2-weighted difference imaging.
Brain : a journal of neurology 1998;121 ( Pt 11)():2095-102.