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Owen White

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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  • Co-Publications

    Name

  • 24

    Eisen, Jonathan

  • 20

    Giglio, Michelle

  • 18

    Wortman, Jennifer

  • 18

    Paulsen, Ian

  • 17

    Salzberg, Steven

  • 17

    Smith, Hamilton

  • 16

    Fraser-Liggett, Claire

  • 11

    Venter, Craig

  • 10

    Tettelin, Hervé

  • 8

    Haft, Daniel

  • 7

    Fleischmann, Robert

  • 7

    Adams, Mark

  • 7

    Nene, Vishvanath

  • 6

    Haas, Brian

  • 6

    Heidelberg, John
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Publications

  • TOP 3
  • Myers G S A; Mathews S A; Eppinger M; Mitchell C; O'Brien K K; White O R; Benahmed F; Brunham R C; Read T D; Ravel J; Bavoil P M; Timms P
    Evidence that human Chlamydia pneumoniae was zoonotically acquired.
  • Carlton Jane M; Adams John H; Silva Joana C; Bidwell Shelby L; Lorenzi Hernan; Caler Elisabet; Crabtree Jonathan; Angiuoli Samuel V; Merino Emilio F; Amedeo Paolo; Cheng Qin; Coulson Richard M R; Crabb Brendan S; Del Portillo Hernando A; Essien Kobby; Feldblyum Tamara V; Fernandez-Becerra Carmen; Gilson Paul R; Gueye Amy H; Guo Xiang; Kang'a Simon; Kooij Taco W A; Korsinczky Michael; Meyer Esmeralda V-S; Nene Vish; Paulsen Ian; White Owen; Ralph Stuart A; Ren Qinghu; Sargeant Tobias J; Salzberg Steven L; Stoeckert Christian J; Sullivan Steven A; Yamamoto Marcio M; Hoffman Stephen L; Wortman Jennifer R; Gardner Malcolm J; Galinski Mary R; Barnwell John W; Fraser-Liggett Claire M
    Comparative genomics of the neglected human malaria parasite Plasmodium vivax.
  • Garrity George M; Field Dawn; Kyrpides Nikos; Hirschman Lynette; Sansone Susanna-Assunta; Angiuoli Samuel; Cole James R; Glöckner Frank Oliver; Kolker Eugene; Kowalchuk George; Moran Mary Ann; Ussery Dave; White Owen
    Toward a standards-compliant genomic and metagenomic publication record.
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All Publications

  • 2009: Myers G S A; Mathews S A; Eppinger M; Mitchell C; O'Brien K K; White O R; Benahmed F; Brunham R C; Read T D; Ravel J; Bavoil P M; Timms P
    Evidence that human Chlamydia pneumoniae was zoonotically acquired.
    Journal of bacteriology 2009;191(23):7225-33.
  • 2008: Carlton Jane M; Adams John H; Silva Joana C; Bidwell Shelby L; Lorenzi Hernan; Caler Elisabet; Crabtree Jonathan; Angiuoli Samuel V; Merino Emilio F; Amedeo Paolo; Cheng Qin; Coulson Richard M R; Crabb Brendan S; Del Portillo Hernando A; Essien Kobby; Feldblyum Tamara V; Fernandez-Becerra Carmen; Gilson Paul R; Gueye Amy H; Guo Xiang; Kang'a Simon; Kooij Taco W A; Korsinczky Michael; Meyer Esmeralda V-S; Nene Vish; Paulsen Ian; White Owen; Ralph Stuart A; Ren Qinghu; Sargeant Tobias J; Salzberg Steven L; Stoeckert Christian J; Sullivan Steven A; Yamamoto Marcio M; Hoffman Stephen L; Wortman Jennifer R; Gardner Malcolm J; Galinski Mary R; Barnwell John W; Fraser-Liggett Claire M
    Comparative genomics of the neglected human malaria parasite Plasmodium vivax.
    Nature 2008;455(7214):757-63.
  • 2008: Garrity George M; Field Dawn; Kyrpides Nikos; Hirschman Lynette; Sansone Susanna-Assunta; Angiuoli Samuel; Cole James R; Glöckner Frank Oliver; Kolker Eugene; Kowalchuk George; Moran Mary Ann; Ussery Dave; White Owen
    Toward a standards-compliant genomic and metagenomic publication record.
    Omics : a journal of integrative biology 2008;12(2):157-60.
  • 2008: Field Dawn; Garrity George M; Sansone Susanna-Assunta; Sterk Peter; Gray Tanya; Kyrpides Nikos; Hirschman Lynette; Glöckner Frank Oliver; Kottmann Renzo; Angiuoli Sam; White Owen; Dawyndt Peter; Thomson Nick; Gil Inigo San; Morrison Norman; Tatusova Tatiana; Mizrachi Ilene; Vaughan Robert; Cochrane Guy; Kagan Leonid; Murphy Sean; Schriml Lynn;
    Meeting report: the fifth Genomic Standards Consortium (GSC) workshop.
    Omics : a journal of integrative biology 2008;12(2):109-13.
  • 2008: Angiuoli Samuel V; Gussman Aaron; Klimke William; Cochrane Guy; Field Dawn; Garrity George; Kodira Chinnappa D; Kyrpides Nikos; Madupu Ramana; Markowitz Victor; Tatusova Tatiana; Thomson Nick; White Owen
    Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation.
    Omics : a journal of integrative biology 2008;12(2):137-41.
  • 2008: Field Dawn; Garrity George; Gray Tanya; Morrison Norman; Selengut Jeremy; Sterk Peter; Tatusova Tatiana; Thomson Nicholas; Allen Michael J; Angiuoli Samuel V; Ashburner Michael; Axelrod Nelson; Baldauf Sandra; Ballard Stuart; Boore Jeffrey; Cochrane Guy; Cole James; Dawyndt Peter; De Vos Paul; DePamphilis Claude; Edwards Robert; Faruque Nadeem; Feldman Robert; Gilbert Jack; Gilna Paul; Glöckner Frank Oliver; Goldstein Philip; Guralnick Robert; Haft Dan; Hancock David; Hermjakob Henning; Hertz-Fowler Christiane; Hugenholtz Phil; Joint Ian; Kagan Leonid; Kane Matthew; Kennedy Jessie; Kowalchuk George; Kottmann Renzo; Kolker Eugene; Kravitz Saul; Kyrpides Nikos; Leebens-Mack Jim; Lewis Suzanna E; Li Kelvin; Lister Allyson L; Lord Phillip; Maltsev Natalia; Markowitz Victor; Martiny Jennifer; Methe Barbara; Mizrachi Ilene; Moxon Richard; Nelson Karen; Parkhill Julian; Proctor Lita; White Owen; Sansone Susanna-Assunta; Spiers Andrew; Stevens Robert; Swift Paul; Taylor Chris; Tateno Yoshio; Tett Adrian; Turner Sarah; Ussery David; Vaughan Bob; Ward Naomi; Whetzel Trish; San Gil Ingio; Wilson Gareth; Wipat Anil
    The minimum information about a genome sequence (MIGS) specification.
    Nature biotechnology 2008;26(5):541-7.
  • 2008: Fedorova Natalie D; Khaldi Nora; Joardar Vinita S; Maiti Rama; Amedeo Paolo; Anderson Michael J; Crabtree Jonathan; Silva Joana C; Badger Jonathan H; Albarraq Ahmed; Angiuoli Sam; Bussey Howard; Bowyer Paul; Cotty Peter J; Dyer Paul S; Egan Amy; Galens Kevin; Fraser-Liggett Claire M; Haas Brian J; Inman Jason M; Kent Richard; Lemieux Sebastien; Malavazi Iran; Orvis Joshua; Roemer Terry; Ronning Catherine M; Sundaram Jaideep P; Sutton Granger; Turner Geoff; Venter J Craig; White Owen R; Whitty Brett R; Youngman Phil; Wolfe Kenneth H; Goldman Gustavo H; Wortman Jennifer R; Jiang Bo; Denning David W; Nierman William C
    Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.
    PLoS genetics 2008;4(4):e1000046.
  • 2007: Brayton Kelly A; Lau Audrey O T; Herndon David R; Hannick Linda; Kappmeyer Lowell S; Berens Shawn J; Bidwell Shelby L; Brown Wendy C; Crabtree Jonathan; Fadrosh Doug; Feldblum Tamara; Forberger Heather A; Haas Brian J; Howell Jeanne M; Khouri Hoda; Koo Hean; Mann David J; Norimine Junzo; Paulsen Ian T; Radune Diana; Ren Qinghu; Smith Roger K; Suarez Carlos E; White Owen; Wortman Jennifer R; Knowles Donald P; McElwain Terry F; Nene Vishvanath M
    Genome sequence of Babesia bovis and comparative analysis of apicomplexan hemoprotozoa.
    PLoS pathogens 2007;3(10):1401-13.
  • 2007: Ghedin Elodie; Wang Shiliang; Spiro David; Caler Elisabet; Zhao Qi; Crabtree Jonathan; Allen Jonathan E; Delcher Arthur L; Guiliano David B; Miranda-Saavedra Diego; Angiuoli Samuel V; Creasy Todd; Amedeo Paolo; Haas Brian; El-Sayed Najib M; Wortman Jennifer R; Feldblyum Tamara; Tallon Luke; Schatz Michael; Shumway Martin; Koo Hean; Salzberg Steven L; Schobel Seth; Pertea Mihaela; Pop Mihai; White Owen; Barton Geoffrey J; Carlow Clotilde K S; Crawford Michael J; Daub Jennifer; Dimmic Matthew W; Estes Chris F; Foster Jeremy M; Ganatra Mehul; Gregory William F; Johnson Nicholas M; Jin Jinming; Komuniecki Richard; Korf Ian; Kumar Sanjay; Laney Sandra; Li Ben-Wen; Li Wen; Lindblom Tim H; Lustigman Sara; Ma Dong; Maina Claude V; Martin David M A; McCarter James P; McReynolds Larry; Mitreva Makedonka; Nutman Thomas B; Parkinson John; Peregrín-Alvarez José M; Poole Catherine; Ren Qinghu; Saunders Lori; Sluder Ann E; Smith Katherine; Stanke Mario; Unnasch Thomas R; Ware Jenna; Wei Aguan D; Weil Gary; Williams Deryck J; Zhang Yinhua; Williams Steven A; Fraser-Liggett Claire; Slatko Barton; Blaxter Mark L; Scott Alan L
    Draft genome of the filarial nematode parasite Brugia malayi.
    Science (New York, N.Y.) 2007;317(5845):1756-60.
  • 2007: Greene John M; Collins Frank; Lefkowitz Elliot J; Roos David; Scheuermann Richard H; Sobral Bruno; Stevens Rick; White Owen; Di Francesco Valentina
    National Institute of Allergy and Infectious Diseases bioinformatics resource centers: new assets for pathogen informatics.
    Infection and immunity 2007;75(7):3212-9.
  • 2007: Nene Vishvanath; Wortman Jennifer R; Lawson Daniel; Haas Brian; Kodira Chinnappa; Tu Zhijian Jake; Loftus Brendan; Xi Zhiyong; Megy Karyn; Grabherr Manfred; Ren Quinghu; Zdobnov Evgeny M; Lobo Neil F; Campbell Kathryn S; Brown Susan E; Bonaldo Maria F; Zhu Jingsong; Sinkins Steven P; Hogenkamp David G; Amedeo Paolo; Arensburger Peter; Atkinson Peter W; Bidwell Shelby; Biedler Jim; Birney Ewan; Bruggner Robert V; Costas Javier; Coy Monique R; Crabtree Jonathan; Crawford Matt; Debruyn Becky; Decaprio David; Eiglmeier Karin; Eisenstadt Eric; El-Dorry Hamza; Gelbart William M; Gomes Suely L; Hammond Martin; Hannick Linda I; Hogan James R; Holmes Michael H; Jaffe David; Johnston J Spencer; Kennedy Ryan C; Koo Hean; Kravitz Saul; Kriventseva Evgenia V; Kulp David; Labutti Kurt; Lee Eduardo; Li Song; Lovin Diane D; Mao Chunhong; Mauceli Evan; Menck Carlos F M; Miller Jason R; Montgomery Philip; Mori Akio; Nascimento Ana L; Naveira Horacio F; Nusbaum Chad; O'leary Sinéad; Orvis Joshua; Pertea Mihaela; Quesneville Hadi; Reidenbach Kyanne R; Rogers Yu-Hui; Roth Charles W; Schneider Jennifer R; Schatz Michael; Shumway Martin; Stanke Mario; Stinson Eric O; Tubio Jose M C; Vanzee Janice P; Verjovski-Almeida Sergio; Werner Doreen; White Owen; Wyder Stefan; Zeng Qiandong; Zhao Qi; Zhao Yongmei; Hill Catherine A; Raikhel Alexander S; Soares Marcelo B; Knudson Dennis L; Lee Norman H; Galagan James; Salzberg Steven L; Paulsen Ian T; Dimopoulos George; Collins Frank H; Birren Bruce; Fraser-Liggett Claire M; Severson David W
    Genome sequence of Aedes aegypti, a major arbovirus vector.
    Science (New York, N.Y.) 2007;316(5832):1718-23.
  • 2007: Carlton Jane M; Hirt Robert P; Silva Joana C; Delcher Arthur L; Schatz Michael; Zhao Qi; Wortman Jennifer R; Bidwell Shelby L; Alsmark U Cecilia M; Besteiro Sébastien; Sicheritz-Ponten Thomas; Noel Christophe J; Dacks Joel B; Foster Peter G; Simillion Cedric; Van de Peer Yves; Miranda-Saavedra Diego; Barton Geoffrey J; Westrop Gareth D; Müller Sylke; Dessi Daniele; Fiori Pier Luigi; Ren Qinghu; Paulsen Ian; Zhang Hanbang; Bastida-Corcuera Felix D; Simoes-Barbosa Augusto; Brown Mark T; Hayes Richard D; Mukherjee Mandira; Okumura Cheryl Y; Schneider Rachel; Smith Alias J; Vanacova Stepanka; Villalvazo Maria; Haas Brian J; Pertea Mihaela; Feldblyum Tamara V; Utterback Terry R; Shu Chung-Li; Osoegawa Kazutoyo; de Jong Pieter J; Hrdy Ivan; Horvathova Lenka; Zubacova Zuzana; Dolezal Pavel; Malik Shehre-Banoo; Logsdon John M; Henze Katrin; Gupta Arti; Wang Ching C; Dunne Rebecca L; Upcroft Jacqueline A; Upcroft Peter; White Owen; Salzberg Steven L; Tang Petrus; Chiu Cheng-Hsun; Lee Ying-Shiung; Embley T Martin; Coombs Graham H; Mottram Jeremy C; Tachezy Jan; Fraser-Liggett Claire M; Johnson Patricia J
    Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis.
    Science (New York, N.Y.) 2007;315(5809):207-12.
  • 2007: Selengut Jeremy D; Haft Daniel H; Davidsen Tanja; Ganapathy Anurhada; Gwinn-Giglio Michelle; Nelson William C; Richter Alexander R; White Owen
    TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.
    Nucleic acids research 2007;35(Database issue):D260-4.
  • 2007: Crabtree Jonathan; Angiuoli Samuel V; Wortman Jennifer R; White Owen R
    Sybil: methods and software for multiple genome comparison and visualization.
    Methods in molecular biology (Clifton, N.J.) 2007;408():93-108.
  • 2007: Heinicke Sven; Livstone Michael S; Lu Charles; Oughtred Rose; Kang Fan; Angiuoli Samuel V; White Owen; Botstein David; Dolinski Kara
    The Princeton Protein Orthology Database (P-POD): a comparative genomics analysis tool for biologists.
    PloS one 2007;2(1):e766.
  • 2006: Hotopp Julie C Dunning; Lin Mingqun; Madupu Ramana; Crabtree Jonathan; Angiuoli Samuel V; Eisen Jonathan A; Seshadri Rekha; Ren Qinghu; Wu Martin; Utterback Teresa R; Smith Shannon; Lewis Matthew; Khouri Hoda; Zhang Chunbin; Niu Hua; Lin Quan; Ohashi Norio; Zhi Ning; Nelson William; Brinkac Lauren M; Dodson Robert J; Rosovitz M J; Sundaram Jaideep; Daugherty Sean C; Davidsen Tanja; Durkin Anthony S; Gwinn Michelle; Haft Daniel H; Selengut Jeremy D; Sullivan Steven A; Zafar Nikhat; Zhou Liwei; Benahmed Faiza; Forberger Heather; Halpin Rebecca; Mulligan Stephanie; Robinson Jeffrey; White Owen; Rikihisa Yasuko; Tettelin Hervé
    Comparative genomics of emerging human ehrlichiosis agents.
    PLoS genetics 2006;2(2):e21.
  • 2005: Nierman William C; Pain Arnab; Anderson Michael J; Wortman Jennifer R; Kim H Stanley; Arroyo Javier; Berriman Matthew; Abe Keietsu; Archer David B; Bermejo Clara; Bennett Joan; Bowyer Paul; Chen Dan; Collins Matthew; Coulsen Richard; Davies Robert; Dyer Paul S; Farman Mark; Fedorova Nadia; Fedorova Natalie; Feldblyum Tamara V; Fischer Reinhard; Fosker Nigel; Fraser Audrey; García Jose L; García Maria J; Goble Arlette; Goldman Gustavo H; Gomi Katsuya; Griffith-Jones Sam; Gwilliam Ryan; Haas Brian; Haas Hubertus; Harris David; Horiuchi H; Huang Jiaqi; Humphray Sean; Jiménez Javier; Keller Nancy; Khouri Hoda; Kitamoto Katsuhiko; Kobayashi Tetsuo; Konzack Sven; Kulkarni Resham; Kumagai Toshitaka; Lafon Anne; Latgé Jean-Paul; Li Weixi; Lord Angela; Lu Charles; Majoros William H; May Gregory S; Miller Bruce L; Mohamoud Yasmin; Molina Maria; Monod Michel; Mouyna Isabelle; Mulligan Stephanie; Murphy Lee; O'Neil Susan; Paulsen Ian; Peñalva Miguel A; Pertea Mihaela; Price Claire; Pritchard Bethan L; Quail Michael A; Rabbinowitsch Ester; Rawlins Neil; Rajandream Marie-Adele; Reichard Utz; Renauld Hubert; Robson Geoffrey D; Rodriguez de Córdoba Santiago; Rodríguez-Peña Jose M; Ronning Catherine M; Rutter Simon; Salzberg Steven L; Sanchez Miguel; Sánchez-Ferrero Juan C; Saunders David; Seeger Kathy; Squares Rob; Squares Steven; Takeuchi Michio; Tekaia Fredj; Turner Geoffrey; Vazquez de Aldana Carlos R; Weidman Janice; White Owen; Woodward John; Yu Jae-Hyuk; Fraser Claire; Galagan James E; Asai Kiyoshi; Machida Masayuki; Hall Neil; Barrell Bart; Denning David W
    Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.
    Nature 2005;438(7071):1151-6.
  • 2005: Tettelin Hervé; Masignani Vega; Cieslewicz Michael J; Donati Claudio; Medini Duccio; Ward Naomi L; Angiuoli Samuel V; Crabtree Jonathan; Jones Amanda L; Durkin A Scott; Deboy Robert T; Davidsen Tanja M; Mora Marirosa; Scarselli Maria; Margarit y Ros Immaculada; Peterson Jeremy D; Hauser Christopher R; Sundaram Jaideep P; Nelson William C; Madupu Ramana; Brinkac Lauren M; Dodson Robert J; Rosovitz Mary J; Sullivan Steven A; Daugherty Sean C; Haft Daniel H; Selengut Jeremy; Gwinn Michelle L; Zhou Liwei; Zafar Nikhat; Khouri Hoda; Radune Diana; Dimitrov George; Watkins Kisha; O'Connor Kevin J B; Smith Shannon; Utterback Teresa R; White Owen; Rubens Craig E; Grandi Guido; Madoff Lawrence C; Kasper Dennis L; Telford John L; Wessels Michael R; Rappuoli Rino; Fraser Claire M
    Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".
    Proceedings of the National Academy of Sciences of the United States of America 2005;102(39):13950-5.
  • 2005: Joardar Vinita; Lindeberg Magdalen; Jackson Robert W; Selengut Jeremy; Dodson Robert; Brinkac Lauren M; Daugherty Sean C; Deboy Robert; Durkin A Scott; Giglio Michelle Gwinn; Madupu Ramana; Nelson William C; Rosovitz M J; Sullivan Steven; Crabtree Jonathan; Creasy Todd; Davidsen Tanja; Haft Dan H; Zafar Nikhat; Zhou Liwei; Halpin Rebecca; Holley Tara; Khouri Hoda; Feldblyum Tamara; White Owen; Fraser Claire M; Chatterjee Arun K; Cartinhour Sam; Schneider David J; Mansfield John; Collmer Alan; Buell C Robin
    Whole-genome sequence analysis of Pseudomonas syringae pv. phaseolicola 1448A reveals divergence among pathovars in genes involved in virulence and transposition.
    Journal of bacteriology 2005;187(18):6488-98.
  • 2005: Buell C Robin; Yuan Qiaoping; Ouyang Shu; Liu Jia; Zhu Wei; Wang Aihui; Maiti Rama; Haas Brian; Wortman Jennifer; Pertea Mihaela; Jones Kristine M; Kim Mary; Overton Larry; Tsitrin Tamara; Fadrosh Douglas; Bera Jayati; Weaver Bruce; Jin Shaohua; Johri Shivani; Reardon Matt; Webb Kristen; Hill Jessica; Moffat Kelly; Tallon Luke; Van Aken Susan; Lewis Matthew; Utterback Teresa; Feldblyum Tamara; Zismann Victoria; Iobst Stacey; Hsiao Joseph; de Vazeille Aymeric R; Salzberg Steven L; White Owen; Fraser Claire; Yu Yeisoo; Kim HeyRan; Rambo Teri; Currie Jennifer; Collura Kristi; Kernodle-Thompson Shelly; Wei Fusheng; Kudrna Kudrna; Ammiraju Jetty Siva S; Luo Meizhong; Goicoechea Jose Luis; Wing Rod A; Henry David; Oates Ryan; Palmer Michael; Pries Gina; Saski Christopher; Simmons Jessica; Soderlund Carol; Nelson William; de la Bastide Melissa; Spiegel Lori; Nascimento Lidia; Huang Emily; Preston Raymond; Zutavern Theresa; Palmer Lance; O'Shaughnessy Andrew; Dike Sujit; McCombie W Richard; Minx Pat; Cordum Holly; Wilson Richard; Jin Weiwei; Lee Hye-Ran; Jiang Jiming; Jackson Scott;
    Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.
    Genome research 2005;15(9):1284-91.
  • 2005: Berriman Matthew; Ghedin Elodie; Hertz-Fowler Christiane; Blandin Gaëlle; Renauld Hubert; Bartholomeu Daniella C; Lennard Nicola J; Caler Elisabet; Hamlin Nancy E; Haas Brian; Böhme Ulrike; Hannick Linda; Aslett Martin A; Shallom Joshua; Marcello Lucio; Hou Lihua; Wickstead Bill; Alsmark U Cecilia M; Arrowsmith Claire; Atkin Rebecca J; Barron Andrew J; Bringaud Frederic; Brooks Karen; Carrington Mark; Cherevach Inna; Chillingworth Tracey-Jane; Churcher Carol; Clark Louise N; Corton Craig H; Cronin Ann; Davies Rob M; Doggett Jonathon; Djikeng Appolinaire; Feldblyum Tamara; Field Mark C; Fraser Audrey; Goodhead Ian; Hance Zahra; Harper David; Harris Barbara R; Hauser Heidi; Hostetler Jessica; Ivens Al; Jagels Kay; Johnson David; Johnson Justin; Jones Kristine; Kerhornou Arnaud X; Koo Hean; Larke Natasha; Landfear Scott; Larkin Christopher; Leech Vanessa; Line Alexandra; Lord Angela; Macleod Annette; Mooney Paul J; Moule Sharon; Martin David M A; Morgan Gareth W; Mungall Karen; Norbertczak Halina; Ormond Doug; Pai Grace; Peacock Chris S; Peterson Jeremy; Quail Michael A; Rabbinowitsch Ester; Rajandream Marie-Adele; Reitter Chris; Salzberg Steven L; Sanders Mandy; Schobel Seth; Sharp Sarah; Simmonds Mark; Simpson Anjana J; Tallon Luke; Turner C Michael R; Tait Andrew; Tivey Adrian R; Van Aken Susan; Walker Danielle; Wanless David; Wang Shiliang; White Brian; White Owen; Whitehead Sally; Woodward John; Wortman Jennifer; Adams Mark D; Embley T Martin; Gull Keith; Ullu Elisabetta; Barry J David; Fairlamb Alan H; Opperdoes Fred; Barrell Barclay G; Donelson John E; Hall Neil; Fraser Claire M; Melville Sara E; El-Sayed Najib M
    The genome of the African trypanosome Trypanosoma brucei.
    Science (New York, N.Y.) 2005;309(5733):416-22.
  • 2005: El-Sayed Najib M; Myler Peter J; Bartholomeu Daniella C; Nilsson Daniel; Aggarwal Gautam; Tran Anh-Nhi; Ghedin Elodie; Worthey Elizabeth A; Delcher Arthur L; Blandin Gaëlle; Westenberger Scott J; Caler Elisabet; Cerqueira Gustavo C; Branche Carole; Haas Brian; Anupama Atashi; Arner Erik; Aslund Lena; Attipoe Philip; Bontempi Esteban; Bringaud Frédéric; Burton Peter; Cadag Eithon; Campbell David A; Carrington Mark; Crabtree Jonathan; Darban Hamid; da Silveira Jose Franco; de Jong Pieter; Edwards Kimberly; Englund Paul T; Fazelina Gholam; Feldblyum Tamara; Ferella Marcela; Frasch Alberto Carlos; Gull Keith; Horn David; Hou Lihua; Huang Yiting; Kindlund Ellen; Klingbeil Michele; Kluge Sindy; Koo Hean; Lacerda Daniela; Levin Mariano J; Lorenzi Hernan; Louie Tin; Machado Carlos Renato; McCulloch Richard; McKenna Alan; Mizuno Yumi; Mottram Jeremy C; Nelson Siri; Ochaya Stephen; Osoegawa Kazutoyo; Pai Grace; Parsons Marilyn; Pentony Martin; Pettersson Ulf; Pop Mihai; Ramirez Jose Luis; Rinta Joel; Robertson Laura; Salzberg Steven L; Sanchez Daniel O; Seyler Amber; Sharma Reuben; Shetty Jyoti; Simpson Anjana J; Sisk Ellen; Tammi Martti T; Tarleton Rick; Teixeira Santuza; Van Aken Susan; Vogt Christy; Ward Pauline N; Wickstead Bill; Wortman Jennifer; White Owen; Fraser Claire M; Stuart Kenneth D; Andersson Björn
    The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease.
    Science (New York, N.Y.) 2005;309(5733):409-15.
  • 2005: El-Sayed Najib M; Myler Peter J; Blandin Gaëlle; Berriman Matthew; Crabtree Jonathan; Aggarwal Gautam; Caler Elisabet; Renauld Hubert; Worthey Elizabeth A; Hertz-Fowler Christiane; Ghedin Elodie; Peacock Christopher; Bartholomeu Daniella C; Haas Brian J; Tran Anh-Nhi; Wortman Jennifer R; Alsmark U Cecilia M; Angiuoli Samuel; Anupama Atashi; Badger Jonathan; Bringaud Frederic; Cadag Eithon; Carlton Jane M; Cerqueira Gustavo C; Creasy Todd; Delcher Arthur L; Djikeng Appolinaire; Embley T Martin; Hauser Christopher; Ivens Alasdair C; Kummerfeld Sarah K; Pereira-Leal Jose B; Nilsson Daniel; Peterson Jeremy; Salzberg Steven L; Shallom Joshua; Silva Joana C; Sundaram Jaideep; Westenberger Scott; White Owen; Melville Sara E; Donelson John E; Andersson Björn; Stuart Kenneth D; Hall Neil
    Comparative genomics of trypanosomatid parasitic protozoa.
    Science (New York, N.Y.) 2005;309(5733):404-9.
  • 2005: Gardner Malcolm J; Bishop Richard; Shah Trushar; de Villiers Etienne P; Carlton Jane M; Hall Neil; Ren Qinghu; Paulsen Ian T; Pain Arnab; Berriman Matthew; Wilson Robert J M; Sato Shigeharu; Ralph Stuart A; Mann David J; Xiong Zikai; Shallom Shamira J; Weidman Janice; Jiang Lingxia; Lynn Jeffery; Weaver Bruce; Shoaibi Azadeh; Domingo Alexander R; Wasawo Delia; Crabtree Jonathan; Wortman Jennifer R; Haas Brian; Angiuoli Samuel V; Creasy Todd H; Lu Charles; Suh Bernard; Silva Joana C; Utterback Teresa R; Feldblyum Tamara V; Pertea Mihaela; Allen Jonathan; Nierman William C; Taracha Evans L N; Salzberg Steven L; White Owen R; Fitzhugh Henry A; Morzaria Subhash; Venter J Craig; Fraser Claire M; Nene Vishvanath
    Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes.
    Science (New York, N.Y.) 2005;309(5731):134-7.
  • 2005: Ayele Mulu; Haas Brian J; Kumar Nikhil; Wu Hank; Xiao Yongli; Van Aken Susan; Utterback Teresa R; Wortman Jennifer R; White Owen R; Town Christopher D
    Whole genome shotgun sequencing of Brassica oleracea and its application to gene discovery and annotation in Arabidopsis.
    Genome research 2005;15(4):487-95.
  • 2005: Haft Daniel H; Selengut Jeremy D; Brinkac Lauren M; Zafar Nikhat; White Owen
    Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.
    Bioinformatics (Oxford, England) 2005;21(3):293-306.
  • 2005: Bishop Richard; Shah Trushar; Pelle Roger; Hoyle David; Pearson Terry; Haines Lee; Brass Andrew; Hulme Helen; Graham Simon P; Taracha Evans L N; Kanga Simon; Lu Charles; Hass Brian; Wortman Jennifer; White Owen; Gardner Malcolm J; Nene Vishvanath; de Villiers Etienne P
    Analysis of the transcriptome of the protozoan Theileria parva using MPSS reveals that the majority of genes are transcriptionally active in the schizont stage.
    Nucleic acids research 2005;33(17):5503-11.
  • 2005: Haas Brian J; Wortman Jennifer R; Ronning Catherine M; Hannick Linda I; Smith Roger K; Maiti Rama; Chan Agnes P; Yu Chunhui; Farzad Maryam; Wu Dongying; White Owen; Town Christopher D
    Complete reannotation of the Arabidopsis genome: methods, tools, protocols and the final release.
    BMC biology 2005;3():7.
  • 2004: Nierman William C; DeShazer David; Kim H Stanley; Tettelin Herve; Nelson Karen E; Feldblyum Tamara; Ulrich Ricky L; Ronning Catherine M; Brinkac Lauren M; Daugherty Sean C; Davidsen Tanja D; Deboy Robert T; Dimitrov George; Dodson Robert J; Durkin A Scott; Gwinn Michelle L; Haft Daniel H; Khouri Hoda; Kolonay James F; Madupu Ramana; Mohammoud Yasmin; Nelson William C; Radune Diana; Romero Claudia M; Sarria Saul; Selengut Jeremy; Shamblin Christine; Sullivan Steven A; White Owen; Yu Yan; Zafar Nikhat; Zhou Liwei; Fraser Claire M
    Structural flexibility in the Burkholderia mallei genome.
    Proceedings of the National Academy of Sciences of the United States of America 2004;101(39):14246-51.
  • 2004: Ghedin Elodie; Bringaud Frederic; Peterson Jeremy; Myler Peter; Berriman Matthew; Ivens Alasdair; Andersson Björn; Bontempi Esteban; Eisen Jonathan; Angiuoli Sam; Wanless David; Von Arx Anna; Murphy Lee; Lennard Nicola; Salzberg Steven; Adams Mark D; White Owen; Hall Neil; Stuart Kenneth; Fraser Claire M; El-Sayed Najib M A
    Gene synteny and evolution of genome architecture in trypanosomatids.
    Molecular and biochemical parasitology 2004;134(2):183-91.
  • 2004: Venter J Craig; Remington Karin; Heidelberg John F; Halpern Aaron L; Rusch Doug; Eisen Jonathan A; Wu Dongying; Paulsen Ian; Nelson Karen E; Nelson William; Fouts Derrick E; Levy Samuel; Knap Anthony H; Lomas Michael W; Nealson Ken; White Owen; Peterson Jeremy; Hoffman Jeff; Parsons Rachel; Baden-Tillson Holly; Pfannkoch Cynthia; Rogers Yu-Hui; Smith Hamilton O
    Environmental genome shotgun sequencing of the Sargasso Sea.
    Science (New York, N.Y.) 2004;304(5667):66-74.
  • 2004: Nelson Karen E; Fouts Derrick E; Mongodin Emmanuel F; Ravel Jacques; DeBoy Robert T; Kolonay James F; Rasko David A; Angiuoli Samuel V; Gill Steven R; Paulsen Ian T; Peterson Jeremy; White Owen; Nelson William C; Nierman William; Beanan Maureen J; Brinkac Lauren M; Daugherty Sean C; Dodson Robert J; Durkin A Scott; Madupu Ramana; Haft Daniel H; Selengut Jeremy; Van Aken Susan; Khouri Hoda; Fedorova Nadia; Forberger Heather; Tran Bao; Kathariou Sophia; Wonderling Laura D; Uhlich Gaylen A; Bayles Darrell O; Luchansky John B; Fraser Claire M
    Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.
    Nucleic acids research 2004;32(8):2386-95.
  • 2003: Methé B A; Nelson K E; Eisen J A; Paulsen I T; Nelson W; Heidelberg J F; Wu D; Wu M; Ward N; Beanan M J; Dodson R J; Madupu R; Brinkac L M; Daugherty S C; DeBoy R T; Durkin A S; Gwinn M; Kolonay J F; Sullivan S A; Haft D H; Selengut J; Davidsen T M; Zafar N; White O; Tran B; Romero C; Forberger H A; Weidman J; Khouri H; Feldblyum T V; Utterback T R; Van Aken S E; Lovley D R; Fraser C M
    Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.
    Science (New York, N.Y.) 2003;302(5652):1967-9.
  • 2003: Haas Brian J; Delcher Arthur L; Mount Stephen M; Wortman Jennifer R; Smith Roger K; Hannick Linda I; Maiti Rama; Ronning Catherine M; Rusch Douglas B; Town Christopher D; Salzberg Steven L; White Owen
    Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies.
    Nucleic acids research 2003;31(19):5654-66.
  • 2003: Buell C Robin; Joardar Vinita; Lindeberg Magdalen; Selengut Jeremy; Paulsen Ian T; Gwinn Michelle L; Dodson Robert J; Deboy Robert T; Durkin A Scott; Kolonay James F; Madupu Ramana; Daugherty Sean; Brinkac Lauren; Beanan Maureen J; Haft Daniel H; Nelson William C; Davidsen Tanja; Zafar Nikhat; Zhou Liwei; Liu Jia; Yuan Qiaoping; Khouri Hoda; Fedorova Nadia; Tran Bao; Russell Daniel; Berry Kristi; Utterback Teresa; Van Aken Susan E; Feldblyum Tamara V; D'Ascenzo Mark; Deng Wen-Ling; Ramos Adela R; Alfano James R; Cartinhour Samuel; Chatterjee Arun K; Delaney Terrence P; Lazarowitz Sondra G; Martin Gregory B; Schneider David J; Tang Xiaoyan; Bender Carol L; White Owen; Fraser Claire M; Collmer Alan
    The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000.
    Proceedings of the National Academy of Sciences of the United States of America 2003;100(18):10181-6.
  • 2003: Miller Eric S; Heidelberg John F; Eisen Jonathan A; Nelson William C; Durkin A Scott; Ciecko Ann; Feldblyum Tamara V; White Owen; Paulsen Ian T; Nierman William C; Lee Jong; Szczypinski Bridget; Fraser Claire M
    Complete genome sequence of the broad-host-range vibriophage KVP40: comparative genomics of a T4-related bacteriophage.
    Journal of bacteriology 2003;185(17):5220-33.
  • 2003: El-Sayed Najib M A; Ghedin Elodie; Song Jinming; MacLeod Annette; Bringaud Frederic; Larkin Christopher; Wanless David; Peterson Jeremy; Hou Lihua; Taylor Sonya; Tweedie Alison; Biteau Nicolas; Khalak Hanif G; Lin Xiaoying; Mason Tanya; Hannick Linda; Caler Elisabet; Blandin Gaëlle; Bartholomeu Daniella; Simpson Anjana J; Kaul Samir; Zhao Hong; Pai Grace; Van Aken Susan; Utterback Teresa; Haas Brian; Koo Hean L; Umayam Lowell; Suh Bernard; Gerrard Caroline; Leech Vanessa; Qi Rong; Zhou Shiguo; Schwartz David; Feldblyum Tamara; Salzberg Steven; Tait Andrew; Turner C Michael R; Ullu Elisabetta; White Owen; Melville Sara; Adams Mark D; Fraser Claire M; Donelson John E
    The sequence and analysis of Trypanosoma brucei chromosome II.
    Nucleic acids research 2003;31(16):4856-63.
  • 2003: Wortman Jennifer R; Haas Brian J; Hannick Linda I; Smith Roger K; Maiti Rama; Ronning Catherine M; Chan Agnes P; Yu Chunhui; Ayele Mulu; Whitelaw Catherine A; White Owen R; Town Christopher D
    Annotation of the Arabidopsis genome.
    Plant physiology 2003;132(2):461-8.
  • 2003: Read Timothy D; Peterson Scott N; Tourasse Nicolas; Baillie Les W; Paulsen Ian T; Nelson Karen E; Tettelin Hervé; Fouts Derrick E; Eisen Jonathan A; Gill Steven R; Holtzapple Erik K; Okstad Ole Andreas; Helgason Erlendur; Rilstone Jennifer; Wu Martin; Kolonay James F; Beanan Maureen J; Dodson Robert J; Brinkac Lauren M; Gwinn Michelle; DeBoy Robert T; Madpu Ramana; Daugherty Sean C; Durkin A Scott; Haft Daniel H; Nelson William C; Peterson Jeremy D; Pop Mihai; Khouri Hoda M; Radune Diana; Benton Jonathan L; Mahamoud Yasmin; Jiang Lingxia; Hance Ioana R; Weidman Janice F; Berry Kristi J; Plaut Roger D; Wolf Alex M; Watkins Kisha L; Nierman William C; Hazen Alyson; Cline Robin; Redmond Caroline; Thwaite Joanne E; White Owen; Salzberg Steven L; Thomason Brendan; Friedlander Arthur M; Koehler Theresa M; Hanna Philip C; Kolstø Anne-Brit; Fraser Claire M
    The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.
    Nature 2003;423(6935):81-6.
  • 2003: Salzberg Steven; Birney Ewan; Eddy Sean; White Owen
    Unrestricted free access works and must continue.
    Nature 2003;422(6934):801.
  • 2003: Read T D; Myers G S A; Brunham R C; Nelson W C; Paulsen I T; Heidelberg J; Holtzapple E; Khouri H; Federova N B; Carty H A; Umayam L A; Haft D H; Peterson J; Beanan M J; White O; Salzberg S L; Hsia R-c; McClarty G; Rank R G; Bavoil P M; Fraser C M
    Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.
    Nucleic acids research 2003;31(8):2134-47.
  • 2003: Haft Daniel H; Selengut Jeremy D; White Owen
    The TIGRFAMs database of protein families.
    Nucleic acids research 2003;31(1):371-3.
  • 2002: Nelson K E; Weinel C; Paulsen I T; Dodson R J; Hilbert H; Martins dos Santos V A P; Fouts D E; Gill S R; Pop M; Holmes M; Brinkac L; Beanan M; DeBoy R T; Daugherty S; Kolonay J; Madupu R; Nelson W; White O; Peterson J; Khouri H; Hance I; Chris Lee P; Holtzapple E; Scanlan D; Tran K; Moazzez A; Utterback T; Rizzo M; Lee K; Kosack D; Moestl D; Wedler H; Lauber J; Stjepandic D; Hoheisel J; Straetz M; Heim S; Kiewitz C; Eisen J A; Timmis K N; Düsterhöft A; Tümmler B; Fraser C M
    Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440.
    Environmental microbiology 2002;4(12):799-808.
  • 2002: Heidelberg John F; Paulsen Ian T; Nelson Karen E; Gaidos Eric J; Nelson William C; Read Timothy D; Eisen Jonathan A; Seshadri Rekha; Ward Naomi; Methe Barbara; Clayton Rebecca A; Meyer Terry; Tsapin Alexandre; Scott James; Beanan Maureen; Brinkac Lauren; Daugherty Sean; DeBoy Robert T; Dodson Robert J; Durkin A Scott; Haft Daniel H; Kolonay James F; Madupu Ramana; Peterson Jeremy D; Umayam Lowell A; White Owen; Wolf Alex M; Vamathevan Jessica; Weidman Janice; Impraim Marjorie; Lee Kathy; Berry Kristy; Lee Chris; Mueller Jacob; Khouri Hoda; Gill John; Utterback Terry R; McDonald Lisa A; Feldblyum Tamara V; Smith Hamilton O; Venter J Craig; Nealson Kenneth H; Fraser Claire M
    Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis.
    Nature biotechnology 2002;20(11):1118-23.
  • 2002: Gardner Malcolm J; Shallom Shamira J; Carlton Jane M; Salzberg Steven L; Nene Vishvanath; Shoaibi Azadeh; Ciecko Anne; Lynn Jeffery; Rizzo Michael; Weaver Bruce; Jarrahi Behnam; Brenner Michael; Parvizi Babak; Tallon Luke; Moazzez Azita; Granger David; Fujii Claire; Hansen Cheryl; Pederson James; Feldblyum Tamara; Peterson Jeremy; Suh Bernard; Angiuoli Sam; Pertea Mihaela; Allen Jonathan; Selengut Jeremy; White Owen; Cummings Leda M; Smith Hamilton O; Adams Mark D; Venter J Craig; Carucci Daniel J; Hoffman Stephen L; Fraser Claire M
    Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14.
    Nature 2002;419(6906):531-4.
  • 2002: Carlton Jane M; Angiuoli Samuel V; Suh Bernard B; Kooij Taco W; Pertea Mihaela; Silva Joana C; Ermolaeva Maria D; Allen Jonathan E; Selengut Jeremy D; Koo Hean L; Peterson Jeremy D; Pop Mihai; Kosack Daniel S; Shumway Martin F; Bidwell Shelby L; Shallom Shamira J; van Aken Susan E; Riedmuller Steven B; Feldblyum Tamara V; Cho Jennifer K; Quackenbush John; Sedegah Martha; Shoaibi Azadeh; Cummings Leda M; Florens Laurence; Yates John R; Raine J Dale; Sinden Robert E; Harris Michael A; Cunningham Deirdre A; Preiser Peter R; Bergman Lawrence W; Vaidya Akhil B; van Lin Leo H; Janse Chris J; Waters Andrew P; Smith Hamilton O; White Owen R; Salzberg Steven L; Venter J Craig; Fraser Claire M; Hoffman Stephen L; Gardner Malcolm J; Carucci Daniel J
    Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii.
    Nature 2002;419(6906):512-9.
  • 2002: Gardner Malcolm J; Hall Neil; Fung Eula; White Owen; Berriman Matthew; Hyman Richard W; Carlton Jane M; Pain Arnab; Nelson Karen E; Bowman Sharen; Paulsen Ian T; James Keith; Eisen Jonathan A; Rutherford Kim; Salzberg Steven L; Craig Alister; Kyes Sue; Chan Man-Suen; Nene Vishvanath; Shallom Shamira J; Suh Bernard; Peterson Jeremy; Angiuoli Sam; Pertea Mihaela; Allen Jonathan; Selengut Jeremy; Haft Daniel; Mather Michael W; Vaidya Akhil B; Martin David M A; Fairlamb Alan H; Fraunholz Martin J; Roos David S; Ralph Stuart A; McFadden Geoffrey I; Cummings Leda M; Subramanian G Mani; Mungall Chris; Venter J Craig; Carucci Daniel J; Hoffman Stephen L; Newbold Chris; Davis Ronald W; Fraser Claire M; Barrell Bart
    Genome sequence of the human malaria parasite Plasmodium falciparum.
    Nature 2002;419(6906):498-511.
  • 2002: Paulsen Ian T; Seshadri Rekha; Nelson Karen E; Eisen Jonathan A; Heidelberg John F; Read Timothy D; Dodson Robert J; Umayam Lowell; Brinkac Lauren M; Beanan Maureen J; Daugherty Sean C; Deboy Robert T; Durkin A Scott; Kolonay James F; Madupu Ramana; Nelson William C; Ayodeji Bola; Kraul Margaret; Shetty Jyoti; Malek Joel; Van Aken Susan E; Riedmuller Steven; Tettelin Herve; Gill Steven R; White Owen; Salzberg Steven L; Hoover David L; Lindler Luther E; Halling Shirley M; Boyle Stephen M; Fraser Claire M
    The Brucella suis genome reveals fundamental similarities between animal and plant pathogens and symbionts.
    Proceedings of the National Academy of Sciences of the United States of America 2002;99(20):13148-53.
  • 2002: Fleischmann R D; Alland D; Eisen J A; Carpenter L; White O; Peterson J; DeBoy R; Dodson R; Gwinn M; Haft D; Hickey E; Kolonay J F; Nelson W C; Umayam L A; Ermolaeva M; Salzberg S L; Delcher A; Utterback T; Weidman J; Khouri H; Gill J; Mikula A; Bishai W; Jacobs Jr W R; Venter J C; Fraser C M
    Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
    Journal of bacteriology 2002;184(19):5479-90.
  • 2002: Eisen Jonathan A; Nelson Karen E; Paulsen Ian T; Heidelberg John F; Wu Martin; Dodson Robert J; Deboy Robert; Gwinn Michelle L; Nelson William C; Haft Daniel H; Hickey Erin K; Peterson Jeremy D; Durkin A Scott; Kolonay James L; Yang Fan; Holt Ingeborg; Umayam Lowell A; Mason Tanya; Brenner Michael; Shea Terrance P; Parksey Debbie; Nierman William C; Feldblyum Tamara V; Hansen Cheryl L; Craven M Brook; Radune Diana; Vamathevan Jessica; Khouri Hoda; White Owen; Gruber Tanja M; Ketchum Karen A; Venter J Craig; Tettelin Hervé; Bryant Donald A; Fraser Claire M
    The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.
    Proceedings of the National Academy of Sciences of the United States of America 2002;99(14):9509-14.
  • 2002: Galagan James E; Nusbaum Chad; Roy Alice; Endrizzi Matthew G; Macdonald Pendexter; FitzHugh Will; Calvo Sarah; Engels Reinhard; Smirnov Serge; Atnoor Deven; Brown Adam; Allen Nicole; Naylor Jerome; Stange-Thomann Nicole; DeArellano Kurt; Johnson Robin; Linton Lauren; McEwan Paul; McKernan Kevin; Talamas Jessica; Tirrell Andrea; Ye Wenjuan; Zimmer Andrew; Barber Robert D; Cann Isaac; Graham David E; Grahame David A; Guss Adam M; Hedderich Reiner; Ingram-Smith Cheryl; Kuettner H Craig; Krzycki Joseph A; Leigh John A; Li Weixi; Liu Jinfeng; Mukhopadhyay Biswarup; Reeve John N; Smith Kerry; Springer Timothy A; Umayam Lowell A; White Owen; White Robert H; Conway de Macario Everly; Ferry James G; Jarrell Ken F; Jing Hua; Macario Alberto J L; Paulsen Ian; Pritchett Matthew; Sowers Kevin R; Swanson Ronald V; Zinder Steven H; Lander Eric; Metcalf William W; Birren Bruce
    The genome of M. acetivorans reveals extensive metabolic and physiological diversity.
    Genome research 2002;12(4):532-42.
  • 2002: Haas Brian J; Volfovsky Natalia; Town Christopher D; Troukhan Maxim; Alexandrov Nickolai; Feldmann Kenneth A; Flavell Richard B; White Owen; Salzberg Steven L
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome biology 2002;3(6):RESEARCH0029.
  • 2001: Tettelin H; Nelson K E; Paulsen I T; Eisen J A; Read T D; Peterson S; Heidelberg J; DeBoy R T; Haft D H; Dodson R J; Durkin A S; Gwinn M; Kolonay J F; Nelson W C; Peterson J D; Umayam L A; White O; Salzberg S L; Lewis M R; Radune D; Holtzapple E; Khouri H; Wolf A M; Utterback T R; Hansen C L; McDonald L A; Feldblyum T V; Angiuoli S; Dickinson T; Hickey E K; Holt I E; Loftus B J; Yang F; Smith H O; Venter J C; Dougherty B A; Morrison D A; Hollingshead S K; Fraser C M
    Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.
    Science (New York, N.Y.) 2001;293(5529):498-506.
  • 2001: Salzberg S L; White O; Peterson J; Eisen J A
    Microbial genes in the human genome: lateral transfer or gene loss?
    Science (New York, N.Y.) 2001;292(5523):1903-6.
  • 2001: Bevan M; Mayer K; White O; Eisen J A; Preuss D; Bureau T; Salzberg S L; Mewes H W
    Sequence and analysis of the Arabidopsis genome.
    Current opinion in plant biology 2001;4(2):105-10.
  • 2001: Nierman W C; Feldblyum T V; Laub M T; Paulsen I T; Nelson K E; Eisen J A; Heidelberg J F; Alley M R; Ohta N; Maddock J R; Potocka I; Nelson W C; Newton A; Stephens C; Phadke N D; Ely B; DeBoy R T; Dodson R J; Durkin A S; Gwinn M L; Haft D H; Kolonay J F; Smit J; Craven M B; Khouri H; Shetty J; Berry K; Utterback T; Tran K; Wolf A; Vamathevan J; Ermolaeva M; White O; Salzberg S L; Venter J C; Shapiro L; Fraser C M;
    Complete genome sequence of Caulobacter crescentus.
    Proceedings of the National Academy of Sciences of the United States of America 2001;98(7):4136-41.
  • 2001: Ermolaeva M D; White O; Salzberg S L
    Prediction of operons in microbial genomes.
    Nucleic acids research 2001;29(5):1216-21.
  • 2001: Peterson J D; Umayam L A; Dickinson T; Hickey E K; White O
    The Comprehensive Microbial Resource.
    Nucleic acids research 2001;29(1):123-5.
  • 2001: Haft D H; Loftus B J; Richardson D L; Yang F; Eisen J A; Paulsen I T; White O
    TIGRFAMs: a protein family resource for the functional identification of proteins.
    Nucleic acids research 2001;29(1):41-3.
  • 2000: Salanoubat M; Lemcke K; Rieger M; Ansorge W; Unseld M; Fartmann B; Valle G; Blöcker H; Perez-Alonso M; Obermaier B; Delseny M; Boutry M; Grivell L A; Mache R; Puigdomènech P; De Simone V; Choisne N; Artiguenave F; Robert C; Brottier P; Wincker P; Cattolico L; Weissenbach J; Saurin W; Quétier F; Schäfer M; Müller-Auer S; Gabel C; Fuchs M; Benes V; Wurmbach E; Drzonek H; Erfle H; Jordan N; Bangert S; Wiedelmann R; Kranz H; Voss H; Holland R; Brandt P; Nyakatura G; Vezzi A; D'Angelo M; Pallavicini A; Toppo S; Simionati B; Conrad A; Hornischer K; Kauer G; Löhnert T H; Nordsiek G; Reichelt J; Scharfe M; Schön O; Bargues M; Terol J; Climent J; Navarro P; Collado C; Perez-Perez A; Ottenwälder B; Duchemin D; Cooke R; Laudie M; Berger-Llauro C; Purnelle B; Masuy D; de Haan M; Maarse A C; Alcaraz J P; Cottet A; Casacuberta E; Monfort A; Argiriou A; flores M; Liguori R; Vitale D; Mannhaupt G; Haase D; Schoof H; Rudd S; Zaccaria P; Mewes H W; Mayer K F; Kaul S; Town C D; Koo H L; Tallon L J; Jenkins J; Rooney T; Rizzo M; Walts A; Utterback T; Fujii C Y; Shea T P; Creasy T H; Haas B; Maiti R; Wu D; Peterson J; Van Aken S; Pai G; Militscher J; Sellers P; Gill J E; Feldblyum T V; Preuss D; Lin X; Nierman W C; Salzberg S L; White O; Venter J C; Fraser C M; Kaneko T; Nakamura Y; Sato S; Kato T; Asamizu E; Sasamoto S; Kimura T; Idesawa K; Kawashima K; Kishida Y; Kiyokawa C; Kohara M; Matsumoto M; Matsuno A; Muraki A; Nakayama S; Nakazaki N; Shinpo S; Takeuchi C; Wada T; Watanabe A; Yamada M; Yasuda M; Tabata S;
    Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.
    Nature 2000;408(6814):820-2.
  • 2000: Theologis A; Ecker J R; Palm C J; Federspiel N A; Kaul S; White O; Alonso J; Altafi H; Araujo R; Bowman C L; Brooks S Y; Buehler E; Chan A; Chao Q; Chen H; Cheuk R F; Chin C W; Chung M K; Conn L; Conway A B; Conway A R; Creasy T H; Dewar K; Dunn P; Etgu P; Feldblyum T V; Feng J; Fong B; Fujii C Y; Gill J E; Goldsmith A D; Haas B; Hansen N F; Hughes B; Huizar L; Hunter J L; Jenkins J; Johnson-Hopson C; Khan S; Khaykin E; Kim C J; Koo H L; Kremenetskaia I; Kurtz D B; Kwan A; Lam B; Langin-Hooper S; Lee A; Lee J M; Lenz C A; Li J H; Li Y; Lin X; Liu S X; Liu Z A; Luros J S; Maiti R; Marziali A; Militscher J; Miranda M; Nguyen M; Nierman W C; Osborne B I; Pai G; Peterson J; Pham P K; Rizzo M; Rooney T; Rowley D; Sakano H; Salzberg S L; Schwartz J R; Shinn P; Southwick A M; Sun H; Tallon L J; Tambunga G; Toriumi M J; Town C D; Utterback T; Van Aken S; Vaysberg M; Vysotskaia V S; Walker M; Wu D; Yu G; Fraser C M; Venter J C; Davis R W
    Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.
    Nature 2000;408(6814):816-20.
  • 2000: Heidelberg J F; Eisen J A; Nelson W C; Clayton R A; Gwinn M L; Dodson R J; Haft D H; Hickey E K; Peterson J D; Umayam L; Gill S R; Nelson K E; Read T D; Tettelin H; Richardson D; Ermolaeva M D; Vamathevan J; Bass S; Qin H; Dragoi I; Sellers P; McDonald L; Utterback T; Fleishmann R D; Nierman W C; White O; Salzberg S L; Smith H O; Colwell R R; Mekalanos J J; Venter J C; Fraser C M
    DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.
    Nature 2000;406(6795):477-83.
  • 2000: Ermolaeva M D; Khalak H G; White O; Smith H O; Salzberg S L
    Prediction of transcription terminators in bacterial genomes.
    Journal of molecular biology 2000;301(1):27-33.
  • 2000: Tettelin H; Saunders N J; Heidelberg J; Jeffries A C; Nelson K E; Eisen J A; Ketchum K A; Hood D W; Peden J F; Dodson R J; Nelson W C; Gwinn M L; DeBoy R; Peterson J D; Hickey E K; Haft D H; Salzberg S L; White O; Fleischmann R D; Dougherty B A; Mason T; Ciecko A; Parksey D S; Blair E; Cittone H; Clark E B; Cotton M D; Utterback T R; Khouri H; Qin H; Vamathevan J; Gill J; Scarlato V; Masignani V; Pizza M; Grandi G; Sun L; Smith H O; Fraser C M; Moxon E R; Rappuoli R; Venter J C
    Complete genome sequence of Neisseria meningitidis serogroup B strain MC58.
    Science (New York, N.Y.) 2000;287(5459):1809-15.
  • 2000: Read T D; Brunham R C; Shen C; Gill S R; Heidelberg J F; White O; Hickey E K; Peterson J; Utterback T; Berry K; Bass S; Linher K; Weidman J; Khouri H; Craven B; Bowman C; Dodson R; Gwinn M; Nelson W; DeBoy R; Kolonay J; McClarty G; Salzberg S L; Eisen J; Fraser C M
    Genome sequences of Chlamydia trachomatis MoPn and Chlamydia pneumoniae AR39.
    Nucleic acids research 2000;28(6):1397-406.
  • 2000: Casjens S; Palmer N; van Vugt R; Huang W M; Stevenson B; Rosa P; Lathigra R; Sutton G; Peterson J; Dodson R J; Haft D; Hickey E; Gwinn M; White O; Fraser C M
    A bacterial genome in flux: the twelve linear and nine circular extrachromosomal DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi.
    Molecular microbiology 2000;35(3):490-516.
  • 2000: Eisen J A; Heidelberg J F; White O; Salzberg S L
    Evidence for symmetric chromosomal inversions around the replication origin in bacteria.
    Genome biology 2000;1(6):RESEARCH0011.
  • 1999: Lin X; Kaul S; Rounsley S; Shea T P; Benito M I; Town C D; Fujii C Y; Mason T; Bowman C L; Barnstead M; Feldblyum T V; Buell C R; Ketchum K A; Lee J; Ronning C M; Koo H L; Moffat K S; Cronin L A; Shen M; Pai G; Van Aken S; Umayam L; Tallon L J; Gill J E; Adams M D; Carrera A J; Creasy T H; Goodman H M; Somerville C R; Copenhaver G P; Preuss D; Nierman W C; White O; Eisen J A; Salzberg S L; Fraser C M; Venter J C
    Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.
    Nature 1999;402(6763):761-8.
  • 1999: Hutchison C A; Peterson S N; Gill S R; Cline R T; White O; Fraser C M; Smith H O; Venter J C
    Global transposon mutagenesis and a minimal Mycoplasma genome.
    Science (New York, N.Y.) 1999;286(5447):2165-9.
  • 1999: Delcher A L; Harmon D; Kasif S; White O; Salzberg S L
    Improved microbial gene identification with GLIMMER.
    Nucleic acids research 1999;27(23):4636-41.
  • 1999: Makarova K S; Wolf Y I; White O; Minton K; Daly M J
    Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species.
    Research in microbiology 1999;150(9-10):711-24.
  • 1999: White O; Eisen J A; Heidelberg J F; Hickey E K; Peterson J D; Dodson R J; Haft D H; Gwinn M L; Nelson W C; Richardson D L; Moffat K S; Qin H; Jiang L; Pamphile W; Crosby M; Shen M; Vamathevan J J; Lam P; McDonald L; Utterback T; Zalewski C; Makarova K S; Aravind L; Daly M J; Minton K W; Fleischmann R D; Ketchum K A; Nelson K E; Salzberg S; Smith H O; Venter J C; Fraser C M
    Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.
    Science (New York, N.Y.) 1999;286(5444):1571-7.
  • 1999: Lin J; Qi R; Aston C; Jing J; Anantharaman T S; Mishra B; White O; Daly M J; Minton K W; Venter J C; Schwartz D C
    Whole-genome shotgun optical mapping of Deinococcus radiodurans.
    Science (New York, N.Y.) 1999;285(5433):1558-62.
  • 1999: Delcher A L; Kasif S; Fleischmann R D; Peterson J; White O; Salzberg S L
    Alignment of whole genomes.
    Nucleic acids research 1999;27(11):2369-76.
  • 1999: Nelson K E; Clayton R A; Gill S R; Gwinn M L; Dodson R J; Haft D H; Hickey E K; Peterson J D; Nelson W C; Ketchum K A; McDonald L; Utterback T R; Malek J A; Linher K D; Garrett M M; Stewart A M; Cotton M D; Pratt M S; Phillips C A; Richardson D; Heidelberg J; Sutton G G; Fleischmann R D; Eisen J A; White O; Salzberg S L; Smith H O; Venter J C; Fraser C M
    Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
    Nature 1999;399(6734):323-9.
  • 1998: Gardner M J; Tettelin H; Carucci D J; Cummings L M; Aravind L; Koonin E V; Shallom S; Mason T; Yu K; Fujii C; Pederson J; Shen K; Jing J; Aston C; Lai Z; Schwartz D C; Pertea M; Salzberg S; Zhou L; Sutton G G; Clayton R; White O; Smith H O; Fraser C M; Adams M D; Venter J C; Hoffman S L
    Chromosome 2 sequence of the human malaria parasite Plasmodium falciparum.
    Science (New York, N.Y.) 1998;282(5391):1126-32.
  • 1998: Clayton R A; White O; Fraser C M
    Findings emerging from complete microbial genome sequences.
    Current opinion in microbiology 1998;1(5):562-6.
  • 1998: Fraser C M; Norris S J; Weinstock G M; White O; Sutton G G; Dodson R; Gwinn M; Hickey E K; Clayton R; Ketchum K A; Sodergren E; Hardham J M; McLeod M P; Salzberg S; Peterson J; Khalak H; Richardson D; Howell J K; Chidambaram M; Utterback T; McDonald L; Artiach P; Bowman C; Cotton M D; Fujii C; Garland S; Hatch B; Horst K; Roberts K; Sandusky M; Weidman J; Smith H O; Venter J C
    Complete genome sequence of Treponema pallidum, the syphilis spirochete.
    Science (New York, N.Y.) 1998;281(5375):375-88.
  • 1998: Salzberg S L; Delcher A L; Kasif S; White O
    Microbial gene identification using interpolated Markov models.
    Nucleic acids research 1998;26(2):544-8.
  • 1997: Fraser C M; Casjens S; Huang W M; Sutton G G; Clayton R; Lathigra R; White O; Ketchum K A; Dodson R; Hickey E K; Gwinn M; Dougherty B; Tomb J F; Fleischmann R D; Richardson D; Peterson J; Kerlavage A R; Quackenbush J; Salzberg S; Hanson M; van Vugt R; Palmer N; Adams M D; Gocayne J; Weidman J; Utterback T; Watthey L; McDonald L; Artiach P; Bowman C; Garland S; Fuji C; Cotton M D; Horst K; Roberts K; Hatch B; Smith H O; Venter J C
    Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi.
    Nature 1997;390(6660):580-6.
  • 1997: Klenk H P; Clayton R A; Tomb J F; White O; Nelson K E; Ketchum K A; Dodson R J; Gwinn M; Hickey E K; Peterson J D; Richardson D L; Kerlavage A R; Graham D E; Kyrpides N C; Fleischmann R D; Quackenbush J; Lee N H; Sutton G G; Gill S; Kirkness E F; Dougherty B A; McKenney K; Adams M D; Loftus B; Peterson S; Reich C I; McNeil L K; Badger J H; Glodek A; Zhou L; Overbeek R; Gocayne J D; Weidman J F; McDonald L; Utterback T; Cotton M D; Spriggs T; Artiach P; Kaine B P; Sykes S M; Sadow P W; D'Andrea K P; Bowman C; Fujii C; Garland S A; Mason T M; Olsen G J; Fraser C M; Smith H O; Woese C R; Venter J C
    The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.
    Nature 1997;390(6658):364-70.
  • 1997: Tomb J F; White O; Kerlavage A R; Clayton R A; Sutton G G; Fleischmann R D; Ketchum K A; Klenk H P; Gill S; Dougherty B A; Nelson K; Quackenbush J; Zhou L; Kirkness E F; Peterson S; Loftus B; Richardson D; Dodson R; Khalak H G; Glodek A; McKenney K; Fitzegerald L M; Lee N; Adams M D; Hickey E K; Berg D E; Gocayne J D; Utterback T R; Peterson J D; Kelley J M; Cotton M D; Weidman J M; Fujii C; Bowman C; Watthey L; Wallin E; Hayes W S; Borodovsky M; Karp P D; Smith H O; Fraser C M; Venter J C
    The complete genome sequence of the gastric pathogen Helicobacter pylori.
    Nature 1997;388(6642):539-47.
  • 1997: Clayton R A; White O; Ketchum K A; Venter J C
    The first genome from the third domain of life.
    Nature 1997;387(6632):459-62.
  • 1996: Bult C J; White O; Olsen G J; Zhou L; Fleischmann R D; Sutton G G; Blake J A; FitzGerald L M; Clayton R A; Gocayne J D; Kerlavage A R; Dougherty B A; Tomb J F; Adams M D; Reich C I; Overbeek R; Kirkness E F; Weinstock K G; Merrick J M; Glodek A; Scott J L; Geoghagen N S; Venter J C
    Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.
    Science (New York, N.Y.) 1996;273(5278):1058-73.
  • 1996: Kyrpides N C; Olsen G J; Klenk H P; White O; Woese C R
    Methanococcus jannaschii genome: revisited.
    Microbial & comparative genomics 1996;1(4):329-38.
  • 1996: White O; Kerlavage A R
    TDB: new databases for biological discovery.
    Methods in enzymology 1996;266():27-40.
  • 1995: Fraser C M; Gocayne J D; White O; Adams M D; Clayton R A; Fleischmann R D; Bult C J; Kerlavage A R; Sutton G; Kelley J M; Fritchman R D; Weidman J F; Small K V; Sandusky M; Fuhrmann J; Nguyen D; Utterback T R; Saudek D M; Phillips C A; Merrick J M; Tomb J F; Dougherty B A; Bott K F; Hu P C; Lucier T S; Peterson S N; Smith H O; Hutchison C A; Venter J C
    The minimal gene complement of Mycoplasma genitalium.
    Science (New York, N.Y.) 1995;270(5235):397-403.
  • 1995: Adams M D; Kerlavage A R; Fleischmann R D; Fuldner R A; Bult C J; Lee N H; Kirkness E F; Weinstock K G; Gocayne J D; White O
    Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence.
    Nature 1995;377(6547 Suppl):3-174.
  • 1995: Fleischmann R D; Adams M D; White O; Clayton R A; Kirkness E F; Kerlavage A R; Bult C J; Tomb J F; Dougherty B A; Merrick J M
    Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.
    Science (New York, N.Y.) 1995;269(5223):496-512.
  • 1995: White O; FitzHugh W
    A rapid retrieval tool for operating on large, flat archive files.
    Computer applications in the biosciences : CABIOS 1995;11(1):45-7.
  • 1994: Fields C; Adams M D; White O; Venter J C
    How many genes in the human genome?
    Nature genetics 1994;7(3):345-6.
  • 1993: White O; Dunning T; Sutton G; Adams M; Venter J C; Fields C
    A quality control algorithm for DNA sequencing projects.
    Nucleic acids research 1993;21(16):3829-38.
  • 1992: White O; Soderlund C; Shanmugan P; Fields C
    Information contents and dinucleotide compositions of plant intron sequences vary with evolutionary origin.
    Plant molecular biology 1992;19(6):1057-64.
  • 1992: Mount S M; Burks C; Hertz G; Stormo G D; White O; Fields C
    Splicing signals in Drosophila: intron size, information content, and consensus sequences.
    Nucleic acids research 1992;20(16):4255-62.
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