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Igor Rogozin

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

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Concepts & Ideas

Phenomena

Molecular Evolution

Chemicals & Drugs

Genes & Molecular Sequences

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Mice

Physiology

Anatomy

Eukaryotic Cells

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Co-Publications
Name
68
Koonin, Eugene
25
Wolf, Yuri
17
Pavlov, Youri
13
Makarova, Kira
11
Babenko, Vladimir
9
Carmel, Liran
8
Kolchanov, Nikolay
8
Glazko, Galina
8
Sverdlov, Alexander
6
Tatusov, Roman
6
Jordan, King
6
Nesterova, Tatyana
5
Malyarchuk, Boris
5
Kunkel, Thomas
5
Mayorov, Vladimir

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Publications

TOP 3
Stone Jana E; Kissling Grace E; Lujan Scott A; Rogozin Igor B; Stith Carrie M; Burgers Peter M J; Kunkel Thomas A
Low-fidelity DNA synthesis by the L979F mutator derivative of Saccharomyces cerevisiae DNA polymerase zeta.
Basu Malay Kumar; Poliakov Eugenia; Rogozin Igor B
Domain mobility in proteins: functional and evolutionary implications.
Rotskaya U N; Rogozin I B; Vasyunina E A; Kolosova N G; Malyarchuk B A; Nevinsky G A; Sinitsyna O I
Analysis of mitochondrial DNA somatic mutations in OXYS and Wistar strain rats.

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All Publications

2009: Stone Jana E; Kissling Grace E; Lujan Scott A; Rogozin Igor B; Stith Carrie M; Burgers Peter M J; Kunkel Thomas A
Low-fidelity DNA synthesis by the L979F mutator derivative of Saccharomyces cerevisiae DNA polymerase zeta.
Nucleic acids research 2009;37(11):3774-87.
2009: Basu Malay Kumar; Poliakov Eugenia; Rogozin Igor B
Domain mobility in proteins: functional and evolutionary implications.
Briefings in bioinformatics 2009;10(3):205-16.
2009: Rotskaya U N; Rogozin I B; Vasyunina E A; Kolosova N G; Malyarchuk B A; Nevinsky G A; Sinitsyna O I
Analysis of mitochondrial DNA somatic mutations in OXYS and Wistar strain rats.
Biochemistry. Biokhimii?a 2009;74(4):430-7.
2009: Carmel Liran; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
A maximum likelihood method for reconstruction of the evolution of eukaryotic gene structure.
Methods in molecular biology (Clifton, N.J.) 2009;541():357-71.
2009: Resch Alissa M; Ogurtsov Aleksey Y; Rogozin Igor B; Shabalina Svetlana A; Koonin Eugene V
Evolution of alternative and constitutive regions of mammalian 5'UTRs.
BMC genomics 2009;10():162.
2009: Tahirov Tahir H; Makarova Kira S; Rogozin Igor B; Pavlov Youri I; Koonin Eugene V
Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol epsilon and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors.
Biology direct 2009;4():11.
2008: Basu Malay Kumar; Rogozin Igor B; Koonin Eugene V
Primordial spliceosomal introns were probably U2-type.
Trends in genetics : TIG 2008;24(11):525-8.
2008: Baranovskiy Andrey G; Babayeva Nigar D; Liston Victoria G; Rogozin Igor B; Koonin Eugene V; Pavlov Youri I; Vassylyev Dmitry G; Tahirov Tahir H
X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.
Cell cycle (Georgetown, Tex.) 2008;7(19):3026-36.
2008: Arana Mercedes E; Seki Mineaki; Wood Richard D; Rogozin Igor B; Kunkel Thomas A
Low-fidelity DNA synthesis by human DNA polymerase theta.
Nucleic acids research 2008;36(11):3847-56.
2008: Csurös Miklós; Rogozin Igor B; Koonin Eugene V
Extremely intron-rich genes in the alveolate ancestors inferred with a flexible maximum-likelihood approach.
Molecular biology and evolution 2008;25(5):903-11.
2008: Basu Malay Kumar; Carmel Liran; Rogozin Igor B; Koonin Eugene V
Evolution of protein domain promiscuity in eukaryotes.
Genome research 2008;18(3):449-61.
2008: Bhattacharya Palash; Grigera Fernando; Rogozin Igor B; McCarty Thomas; Morse Herbert C; Kenter Amy L
Identification of murine B cell lines that undergo somatic hypermutation focused to A:T and G:C residues.
European journal of immunology 2008;38(1):227-39.
2008: Basu Malay Kumar; Rogozin Igor B; Deusch Oliver; Dagan Tal; Martin William; Koonin Eugene V
Evolutionary dynamics of introns in plastid-derived genes in plants: saturation nearly reached but slow intron gain continues.
Molecular biology and evolution 2008;25(1):111-9.
2008: Rogozin Igor B; Makarova Kira S; Pavlov Youri I; Koonin Eugene V
A highly conserved family of inactivated archaeal B family DNA polymerases.
Biology direct 2008;3():32.
2008: Churbanov Alexander; Winters-Hilt Stephen; Koonin Eugene V; Rogozin Igor B
Accumulation of GC donor splice signals in mammals.
Biology direct 2008;3():30.
2008: Elisaphenko Eugeny A; Kolesnikov Nikolay N; Shevchenko Alexander I; Rogozin Igor B; Nesterova Tatyana B; Brockdorff Neil; Zakian Suren M
A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements.
PloS one 2008;3(6):e2521.
2008: Basu Malay Kumar; Makalowski Wojciech; Rogozin Igor B; Koonin Eugene V
U12 intron positions are more strongly conserved between animals and plants than U2 intron positions.
Biology direct 2008;3():19.
2008: Rogozin Igor B; Thomson Karen; Csürös Miklós; Carmel Liran; Koonin Eugene V
Homoplasy in genome-wide analysis of rare amino acid replacements: the molecular-evolutionary basis for Vavilov's law of homologous series.
Biology direct 2008;3():7.
2007: Rogozin Igor B; Wolf Yuri I; Carmel Liran; Koonin Eugene V
Analysis of rare amino acid replacements supports the Coelomata clade.
Molecular biology and evolution 2007;24(12):2594-7.
2007: Zheng Jie; Rogozin Igor B; Koonin Eugene V; Przytycka Teresa M
Support for the Coelomata clade of animals from a rigorous analysis of the pattern of intron conservation.
Molecular biology and evolution 2007;24(11):2583-92.
2007: Lada A G; Iyer L M; Rogozin I B; Aravind L; Pavlov Iu I
[Vertebrate immunity: mutator proteins and their evolution]
Genetika 2007;43(10):1311-27.
2007: Vitushkina Maria V; Rogozin Igor B; Jelkmann Wilhelm; Koonin Eugene V; Agranovsky Alexey A
Completion of the mapping of transcription start sites for the five-gene block subgenomic RNAs of Beet yellows Closterovirus and identification of putative subgenomic promoters.
Virus research 2007;128(1-2):153-8.
2007: Resch Alissa M; Carmel Liran; Mariño-Ramírez Leonardo; Ogurtsov Aleksey Y; Shabalina Svetlana A; Rogozin Igor B; Koonin Eugene V
Widespread positive selection in synonymous sites of mammalian genes.
Molecular biology and evolution 2007;24(8):1821-31.
2007: Csurös Miklós; Holey J Andrew; Rogozin Igor B
In search of lost introns.
Bioinformatics (Oxford, England) 2007;23(13):i87-96.
2007: Carmel Liran; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
Evolutionarily conserved genes preferentially accumulate introns.
Genome research 2007;17(7):1045-50.
2007: Carmel Liran; Wolf Yuri I; Rogozin Igor B; Koonin Eugene V
Three distinct modes of intron dynamics in the evolution of eukaryotes.
Genome research 2007;17(7):1034-44.
2007: Rogozin Igor B; Iyer Lakshminarayan M; Liang Lizhi; Glazko Galina V; Liston Victoria G; Pavlov Youri I; Aravind L; Pancer Zeev
Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase.
Nature immunology 2007;8(6):647-56.
2007: Rogozin Igor B; Wolf Yuri I; Carmel Liran; Koonin Eugene V
Ecdysozoan clade rejected by genome-wide analysis of rare amino acid replacements.
Molecular biology and evolution 2007;24(4):1080-90.
2007: Xiao Zheng; Ray Madhumita; Jiang Chuancang; Clark Alan B; Rogozin Igor B; Diaz Marilyn
Known components of the immunoglobulin A:T mutational machinery are intact in Burkitt lymphoma cell lines with G:C bias.
Molecular immunology 2007;44(10):2659-66.
2007: Sverdlov Alexander V; Csuros Miklos; Rogozin Igor B; Koonin Eugene V
A glimpse of a putative pre-intron phase of eukaryotic evolution.
Trends in genetics : TIG 2007;23(3):105-8.
2007: Carmel Liran; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
Patterns of intron gain and conservation in eukaryotic genes.
BMC evolutionary biology 2007;7():192.
2006: Rogozin Igor B; Pavlov Youri I
The cytidine deaminase AID exhibits similar functional properties in yeast and mammals.
Molecular immunology 2006;43(9):1481-4.
2006: Pavlov Youri I; Shcherbakova Polina V; Rogozin Igor B
Roles of DNA polymerases in replication, repair, and recombination in eukaryotes.
International review of cytology 2006;255():41-132.
2006: Dewey Colin N; Rogozin Igor B; Koonin Eugene V
Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns.
BMC genomics 2006;7():311.
2006: Churbanov Alexander; Rogozin Igor B; Deogun Jitender S; Ali Hesham
Method of predicting splice sites based on signal interactions.
Biology direct 2006;1():10.
2006: Glazko Galina V; Babenko Vladimir N; Koonin Eugene V; Rogozin Igor B
Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection.
Biology direct 2006;1():4.
2006: Babenko Vladimir N; Basu Malay K; Kondrashov Fyodor A; Rogozin Igor B; Koonin Eugene V
Signs of positive selection of somatic mutations in human cancers detected by EST sequence analysis.
BMC cancer 2006;6():36.
2005: Alder Matthew N; Rogozin Igor B; Iyer Lakshminarayan M; Glazko Galina V; Cooper Max D; Pancer Zeev
Diversity and function of adaptive immune receptors in a jawless vertebrate.
Science (New York, N.Y.) 2005;310(5756):1970-3.
2005: Rogozin Igor B; Basu Malay K; Jordan I King; Pavlov Youri I; Koonin Eugene V
APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis.
Cell cycle (Georgetown, Tex.) 2005;4(9):1281-5.
2005: Kravchenko Julia E; Rogozin Igor B; Koonin Eugene V; Chumakov Peter M
Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin.
Nature 2005;436(7051):735-9.
2005: Kochetov Alex V; Sarai Akinori; Rogozin Igor B; Shumny Vladimir K; Kolchanov Nikolay A
The role of alternative translation start sites in the generation of human protein diversity.
Molecular genetics and genomics : MGG 2005;273(6):491-6.
2005: Malyarchuk Boris A; Papuga Marta; Grzybowski Tomasz; Rogozin Igor B; Wozniak Marcin; Derenko Miroslava V; Rychkov Serge Yu; Czarny Jakub; Zakharov Ilia A; Miscicka-Sliwka Danuta
Low variability of the POLG (CAG)n repeat in north Eurasian populations.
Human biology; an international record of research 2005;77(3):355-65.
2005: Rogozin Igor B; Sverdlov Alexander V; Babenko Vladimir N; Koonin Eugene V
Analysis of evolution of exon-intron structure of eukaryotic genes.
Briefings in bioinformatics 2005;6(2):118-34.
2005: Mayorov Vladimir I; Rogozin Igor B; Adkison Linda R; Gearhart Patricia J
DNA polymerase eta contributes to strand bias of mutations of A versus T in immunoglobulin genes.
Journal of immunology (Baltimore, Md. : 1950) 2005;174(12):7781-6.
2005: Koonin Eugene V; Rogozin Igor B; Glazko Galina V
p53 gain-of-function: tumor biology and bioinformatics come together.
Cell cycle (Georgetown, Tex.) 2005;4(5):686-8.
2005: Glazko Galina V; Koonin Eugene V; Rogozin Igor B
Molecular dating: ape bones agree with chicken entrails.
Trends in genetics : TIG 2005;21(2):89-92.
2005: Churbanov Alexander; Rogozin Igor B; Babenko Vladimir N; Ali Hesham; Koonin Eugene V
Evolutionary conservation suggests a regulatory function of AUG triplets in 5'-UTRs of eukaryotic genes.
Nucleic acids research 2005;33(17):5512-20.
2005: Mayorov Vladimir I; Rogozin Igor B; Adkison Linda R; Frahm Christin; Kunkel Thomas A; Pavlov Youri I
Expression of human AID in yeast induces mutations in context similar to the context of somatic hypermutation at G-C pairs in immunoglobulin genes.
BMC immunology 2005;6(1):10.
2005: Sverdlov Alexander V; Rogozin Igor B; Babenko Vladimir N; Koonin Eugene V
Conservation versus parallel gains in intron evolution.
Nucleic acids research 2005;33(6):1741-8.
2005: Rogozin Igor B; Malyarchuk Boris A; Pavlov Youri I; Milanesi Luciano
From context-dependence of mutations to molecular mechanisms of mutagenesis.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2005;():409-20.
2004: Malyarchuk Boris A; Rogozin Igor B
On the Etruscan mitochondrial DNA contribution to modern humans.
American journal of human genetics 2004;75(5):920-3; author reply 923-7.
2004: Sverdlov Alexander V; Rogozin Igor B; Babenko Vladimir N; Koonin Eugene V
Reconstruction of ancestral protosplice sites.
Current biology : CB 2004;14(16):1505-8.
2004: Sverdlov Alexander V; Babenko Vladimir N; Rogozin Igor B; Koonin Eugene V
Preferential loss and gain of introns in 3' portions of genes suggests a reverse-transcription mechanism of intron insertion.
Gene 2004;338(1):85-91.
2004: Glazko Galina V; Koonin Eugene V; Rogozin Igor B
Mutation hotspots in the p53 gene in tumors of different origin: correlation with evolutionary conservation and signs of positive selection.
Biochimica et biophysica acta 2004;1679(2):95-106.
2004: Malyarchuk B A; Rogozin I B
Mutagenesis by transient misalignment in the human mitochondrial DNA control region.
Annals of human genetics 2004;68(Pt 4):324-39.
2004: Rogozin Igor B; Makarova Kira S; Wolf Yuri I; Koonin Eugene V
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes.
Briefings in bioinformatics 2004;5(2):131-49.
2004: Rogozin Igor B; Diaz Marilyn
Cutting edge: DGYW/WRCH is a better predictor of mutability at G:C bases in Ig hypermutation than the widely accepted RGYW/WRCY motif and probably reflects a two-step activation-induced cytidine deaminase-triggered process.
Journal of immunology (Baltimore, Md. : 1950) 2004;172(6):3382-4.
2004: Kouprina Natalay; Mullokandov Michael; Rogozin Igor B; Collins N Keith; Solomon Greg; Otstot John; Risinger John I; Koonin Eugene V; Barrett J Carl; Larionov Vladimir
The SPANX gene family of cancer/testis-specific antigens: rapid evolution and amplification in African great apes and hominids.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(9):3077-82.
2004: Kondrashov Alexey S; Rogozin Igor B
Context of deletions and insertions in human coding sequences.
Human mutation 2004;23(2):177-85.
2004: Wolf Yuri I; Rogozin Igor B; Koonin Eugene V
Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis.
Genome research 2004;14(1):29-36.
2004: Babenko Vladimir N; Rogozin Igor B; Mekhedov Sergei L; Koonin Eugene V
Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
Nucleic acids research 2004;32(12):3724-33.
2004: Shabalina Svetlana A; Ogurtsov Aleksey Y; Rogozin Igor B; Koonin Eugene V; Lipman David J
Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.
Nucleic acids research 2004;32(5):1774-82.
2004: Koonin Eugene V; Fedorova Natalie D; Jackson John D; Jacobs Aviva R; Krylov Dmitri M; Makarova Kira S; Mazumder Raja; Mekhedov Sergei L; Nikolskaya Anastasia N; Rao B Sridhar; Rogozin Igor B; Smirnov Sergei; Sorokin Alexander V; Sverdlov Alexander V; Vasudevan Sona; Wolf Yuri I; Yin Jodie J; Natale Darren A
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.
Genome biology 2004;5(2):R7.
2003: Sverdlov Alexander V; Rogozin Igor B; Babenko Vladimir N; Koonin Eugene V
Evidence of splice signal migration from exon to intron during intron evolution.
Current biology : CB 2003;13(24):2170-4.
2003: Naykova Tatiana M; Kondrakhin Yuri V; Rogozin Igor B; Voevoda Mikhail I; Yudin Nikolai S; Romaschenko Aida G
Concerted changes in the nucleotide sequences of the intragenic promoter regions of eukaryotic genes for tRNAs of all specificities.
Journal of molecular evolution 2003;57(5):520-32.
2003: Krylov Dmitri M; Wolf Yuri I; Rogozin Igor B; Koonin Eugene V
Gene loss, protein sequence divergence, gene dispensability, expression level, and interactivity are correlated in eukaryotic evolution.
Genome research 2003;13(10):2229-35.
2003: Shcherbakova Polina V; Pavlov Youri I; Chilkova Olga; Rogozin Igor B; Johansson Erik; Kunkel Thomas A
Unique error signature of the four-subunit yeast DNA polymerase epsilon.
The Journal of biological chemistry 2003;278(44):43770-80.
2003: Rogozin Igor B; Babenko Vladimir N; Milanesi Luciano; Pavlov Youri I
Computational analysis of mutation spectra.
Briefings in bioinformatics 2003;4(3):210-27.
2003: Rogozin Igor B; Wolf Yuri I; Sorokin Alexander V; Mirkin Boris G; Koonin Eugene V
Remarkable interkingdom conservation of intron positions and massive, lineage-specific intron loss and gain in eukaryotic evolution.
Current biology : CB 2003;13(17):1512-7.
2003: Rogozin Igor B; Pavlov Youri I
Theoretical analysis of mutation hotspots and their DNA sequence context specificity.
Mutation research 2003;544(1):65-85.
2003: McDonald John P; Frank Ekaterina G; Plosky Brian S; Rogozin Igor B; Masutani Chikahide; Hanaoka Fumio; Woodgate Roger; Gearhart Patricia J
129-derived strains of mice are deficient in DNA polymerase iota and have normal immunoglobulin hypermutation.
The Journal of experimental medicine 2003;198(4):635-43.
2003: Dufresne Alexis; Salanoubat Marcel; Partensky Frédéric; Artiguenave François; Axmann Ilka M; Barbe Valérie; Duprat Simone; Galperin Michael Y; Koonin Eugene V; Le Gall Florence; Makarova Kira S; Ostrowski Martin; Oztas Sophie; Robert Catherine; Rogozin Igor B; Scanlan David J; Tandeau de Marsac Nicole; Weissenbach Jean; Wincker Patrick; Wolf Yuri I; Hess Wolfgang R
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(17):10020-5.
2003: Milanesi Luciano; Rogozin Igor B
ESTMAP: a system for expressed sequence tags mapping on genomic sequences.
IEEE transactions on nanobioscience 2003;2(2):75-8.
2003: Liu Yongqing; Zhou Jizhong; Omelchenko Marina V; Beliaev Alex S; Venkateswaran Amudhan; Stair Julia; Wu Liyou; Thompson Dorothea K; Xu Dong; Rogozin Igor B; Gaidamakova Elena K; Zhai Min; Makarova Kira S; Koonin Eugene V; Daly Michael J
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(7):4191-6.
2003: Yang Wei; Rogozin Igor B; Koonin Eugene V
Yeast POL5 is an evolutionarily conserved regulator of rDNA transcription unrelated to any known DNA polymerases.
Cell cycle (Georgetown, Tex.) 2003;2(2):120-2.
2003: Glazko Galina V; Koonin Eugene V; Rogozin Igor B; Shabalina Svetlana A
A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions.
Trends in genetics : TIG 2003;19(3):119-24.
2003: Rogozin Igor B; Aravind L; Koonin Eugene V
Differential action of natural selection on the N and C-terminal domains of 2'-5' oligoadenylate synthetases and the potential nuclease function of the C-terminal domain.
Journal of molecular biology 2003;326(5):1449-61.
2003: Kouprina N; Ebersole T; Koriabine M; Pak E; Rogozin I B; Katoh M; Oshimura M; Ogi K; Peredelchuk M; Solomon G; Brown W; Barrett J C; Larionov V
Cloning of human centromeres by transformation-associated recombination in yeast and generation of functional human artificial chromosomes.
Nucleic acids research 2003;31(3):922-34.
2003: Jordan I King; Rogozin Igor B; Glazko Galina V; Koonin Eugene V
Origin of a substantial fraction of human regulatory sequences from transposable elements.
Trends in genetics : TIG 2003;19(2):68-72.
2003: Rogozin I B; Babenko V N; Fedorova N D; Jackson J D; Jacobs A R; Krylov D M; Makarova K S; Mazumder R; Mekhedov S L; Mirkin B G; Nikolskaya A N; Rao B S; Smirnov S; Sorokin A V; Sverdlov A V; Vasudevan S; Wolf Y I; Yin J J; Natale D A; Koonin E V
Evolution of eukaryotic gene repertoire and gene structure: discovering the unexpected dynamics of genome evolution.
Cold Spring Harbor symposia on quantitative biology 2003;68():293-301.
2003: Omelchenko Marina V; Makarova Kira S; Wolf Yuri I; Rogozin Igor B; Koonin Eugene V
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.
Genome biology 2003;4(9):R55.
2003: Koonin Eugene V; Rogozin Igor B
Getting positive about selection.
Genome biology 2003;4(8):331.
2003: Koonin Eugene V; Makarova Kira S; Rogozin Igor B; Davidovic Laetitia; Letellier Marie-Claude; Pellegrini Luca
The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers.
Genome biology 2003;4(3):R19.
2002: Rogozin Igor B; Makarova Kira S; Natale Darren A; Spiridonov Alexey N; Tatusov Roman L; Wolf Yuri I; Yin Jodie; Koonin Eugene V
Congruent evolution of different classes of non-coding DNA in prokaryotic genomes.
Nucleic acids research 2002;30(19):4264-71.
2002: Wolf Yuri I; Rogozin Igor B; Grishin Nick V; Koonin Eugene V
Genome trees and the tree of life.
Trends in genetics : TIG 2002;18(9):472-9.
2002: Perelygin Andrey A; Kondrashov Fyodor A; Rogozin Igor B; Brinton Margo A
Evolution of the mouse polyubiquitin-C gene.
Journal of molecular evolution 2002;55(2):202-10.
2002: Kochetov A V; Syrnik O A; Rogozin I B; Glazko G V; Komarova M L; Shumnyi V K
[Context organization of mRNA 5'-untranslated regions of higher plants]
Molekuliarnaia biologiia 2002;36(4):649-56.
2002: Malyarchuk Boris A; Rogozin Igor B; Berikov Vladimir B; Derenko Miroslava V
Analysis of phylogenetically reconstructed mutational spectra in human mitochondrial DNA control region.
Human genetics 2002;111(1):46-53.
2002: Pavlov Youri I; Rogozin Igor B; Galkin Alexey P; Aksenova Anna Y; Hanaoka Fumio; Rada Christina; Kunkel Thomas A
Correlation of somatic hypermutation specificity and A-T base pair substitution errors by DNA polymerase eta during copying of a mouse immunoglobulin kappa light chain transgene.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(15):9954-9.
2002: Jordan I King; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
Microevolutionary genomics of bacteria.
Theoretical population biology 2002;61(4):435-47.
2002: Jordan I King; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
Essential genes are more evolutionarily conserved than are nonessential genes in bacteria.
Genome research 2002;12(6):962-8.
2002: Rogozin Igor B; Spiridonov Alexey N; Sorokin Alexander V; Wolf Yuri I; Jordan I King; Tatusov Roman L; Koonin Eugene V
Purifying and directional selection in overlapping prokaryotic genes.
Trends in genetics : TIG 2002;18(5):228-32.
2002: Rogozin Igor B; Makarova Kira S; Murvai Janos; Czabarka Eva; Wolf Yuri I; Tatusov Roman L; Szekely Laszlo A; Koonin Eugene V
Connected gene neighborhoods in prokaryotic genomes.
Nucleic acids research 2002;30(10):2212-23.
2002: Slesarev Alexei I; Mezhevaya Katja V; Makarova Kira S; Polushin Nikolai N; Shcherbinina Olga V; Shakhova Vera V; Belova Galina I; Aravind L; Natale Darren A; Rogozin Igor B; Tatusov Roman L; Wolf Yuri I; Stetter Karl O; Malykh Andrei G; Koonin Eugene V; Kozyavkin Sergei A
The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(7):4644-9.
2002: Rogozin Igor B; Kunkel Thomas A; Pavlov Youri I
Double-strand breaks in DNA during somatic hypermutation of Ig genes: cause or consequence?
Trends in immunology 2002;23(1):12-3.
2002: Makarova Kira S; Aravind L; Grishin Nick V; Rogozin Igor B; Koonin Eugene V
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis.
Nucleic acids research 2002;30(2):482-96.
2002: Biunno Ida; Castiglioni Bianca; Rogozin Igor B; DeBellis Gianluca; Malferrari Giulia; Cattaneo Monica
Cross-species conservation of SEL1L, a human pancreas-specific expressing gene.
Omics : a journal of integrative biology 2002;6(2):187-98.
2002: Kondrashov Fyodor A; Rogozin Igor B; Wolf Yuri I; Koonin Eugene V
Selection in the evolution of gene duplications.
Genome biology 2002;3(2):RESEARCH0008.
2001: Avedisov S N; Rogozin I B; Koonin E V; Thomas B J
Rapid evolution of a cyclin A inhibitor gene, roughex, in Drosophila.
Molecular biology and evolution 2001;18(11):2110-8.
2001: Wolf Y I; Rogozin I B; Grishin N V; Tatusov R L; Koonin E V
Genome trees constructed using five different approaches suggest new major bacterial clades.
BMC evolutionary biology 2001;1():8.
2001: Rogozin I B; Kochetov A V; Kondrashov F A; Koonin E V; Milanesi L
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
Bioinformatics (Oxford, England) 2001;17(10):890-900.
2001: Matsuda T; Bebenek K; Masutani C; Rogozin I B; Hanaoka F; Kunkel T A
Error rate and specificity of human and murine DNA polymerase eta.
Journal of molecular biology 2001;312(2):335-46.
2001: Rogozin I B; Berikov V B; Vasiunina E A; Sinitsina O I
[Study of the DNA primary structure effect on induction of mutations by alkylating agents]
Genetika 2001;37(6):854-61.
2001: Rogozin I B; Pavlov Y I; Bebenek K; Matsuda T; Kunkel T A
Somatic mutation hotspots correlate with DNA polymerase eta error spectrum.
Nature immunology 2001;2(6):530-6.
2001: Nesterova T B; Slobodyanyuk S Y; Elisaphenko E A; Shevchenko A I; Johnston C; Pavlova M E; Rogozin I B; Kolesnikov N N; Brockdorff N; Zakian S M
Characterization of the genomic Xist locus in rodents reveals conservation of overall gene structure and tandem repeats but rapid evolution of unique sequence.
Genome research 2001;11(5):833-49.
2001: Konstantinov Y; Tarasenko V I; Rogozin I B
Redox modulation of the activity of DNA topoisomerase I from carrot (Daucus carota) mitochondria.
Doklady. Biochemistry and biophysics 2001;377():82-4.
2001: Wolf Y I; Rogozin I B; Kondrashov A S; Koonin E V
Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
Genome research 2001;11(3):356-72.
2001: Glazko G V; Rogozin I B; Glazkov M V
Comparative study and prediction of DNA fragments associated with various elements of the nuclear matrix.
Biochimica et biophysica acta 2001;1517(3):351-64.
2001: Rogozin I; Kondrashov F; Glazko G
Use of mutation spectra analysis software.
Human mutation 2001;17(2):83-102.
2001: Kulikov V V; Derkatch I L; Noskov V N; Tarunina O V; Chernoff Y O; Rogozin I B; Pavlov Y I
Mutagenic specificity of the base analog 6-N-hydroxylaminopurine in the LYS2 gene of yeast Saccharomyces cerevisiae.
Mutation research 2001;473(2):151-61.
2001: Cattaneo M; Sorio C; Malferrari G; Rogozin I B; Bernard L; Scarpa A; Zollo M; Biunno I
Cloning and functional analysis of SEL1L promoter region, a pancreas-specific gene.
DNA and cell biology 2001;20(1):1-9.
2001: Jordan I K; Kondrashov F A; Rogozin I B; Tatusov R L; Wolf Y I; Koonin E V
Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins.
Genome biology 2001;2(12):RESEARCH0053.
2000: Rogozin I B; Lyons-Weiler J; Koonin E V
Intron sliding in conserved gene families.
Trends in genetics : TIG 2000;16(10):430-2.
2000: Rogozin I B; Mayorov V I; Lavrentieva M V; Milanesi L; Adkison L R
Prediction and phylogenetic analysis of mammalian short interspersed elements (SINEs).
Briefings in bioinformatics 2000;1(3):260-74.
2000: Nei M; Rogozin I B; Piontkivska H
Purifying selection and birth-and-death evolution in the ubiquitin gene family.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(20):10866-71.
2000: Rogozin I B; Glazko G V; Glazkov M V
Computer prediction of sites associated with various elements of the nuclear matrix.
Briefings in bioinformatics 2000;1(1):33-44.
2000: Mayorov V I; Rogozin I B; Elisaphenko E A; Adkison L R
B2 elements present in the human genome.
Mammalian genome : official journal of the International Mammalian Genome Society 2000;11(2):177-9.
2000: Glazko G V; Rogozin I B; Glazkov M V
[Computer prediction of DNa binding sites involved in interaction with different nuclear matrix elements]
Molekuliarnaia biologiia 2000;34(1):5-10.
1999: Khromov-Borisov N N; Rogozin I B; Pêgas Henriques J A; de Serres F J
Similarity pattern analysis in mutational distributions.
Mutation research 1999;430(1):55-74.
1999: Babenko V N; Rogozin I B
[Use of a rank correlation coefficient for comparing mutational spectra]
Biofizika 1999;44(4):632-8.
1999: Milanesi L; D'Angelo D; Rogozin I B
GeneBuilder: interactive in silico prediction of gene structure.
Bioinformatics (Oxford, England) 1999;15(7-8):612-21.
1999: Berikov V B; Rogozin I B
Regression trees for analysis of mutational spectra in nucleotide sequences.
Bioinformatics (Oxford, England) 1999;15(7-8):553-62.
1999: Mayorov V I; Rogozin I B; Adkison L R
Characterization of several LINE-1 elements in Microtus kirgisorum.
Mammalian genome : official journal of the International Mammalian Genome Society 1999;10(7):724-9.
1999: Glazko G V; Rogozin I B; Sozinov A A
[The mutational spectra of gene p53 in different types of tumors]
T?Sitologii?a i genetika 1999;33(3):14-20.
1999: Rogozin I B; D'Angelo D; Milanesi L
Protein-coding regions prediction combining similarity searches and conservative evolutionary properties of protein-coding sequences.
Gene 1999;226(1):129-37.
1998: Krapov E A; Elisafenko E A; Rogozin I B; Pavlova S V; Vorob'eva N V; Serdiukova N A; Sablina O V; Grafodatskii A S; Zakiian S M
[Characteristics of new family of tandemly organized repeats STR47 in common voles]
Molekuliarnaia biologiia 1998;32(6):987-91.
1998: Flood W D; Rogozin I B; Ruvinsky A
A novel subfamily of LINE-derived elements in mice.
Mammalian genome : official journal of the International Mammalian Genome Society 1998;9(11):881-5.
1998: Glazkov M V; Rogozin I B; Glazko G V
[Comparative study of fragments of chromosomal DNA, isolated from the nuclear lamina, core of rosette-like structures (elementary chromomeres), MARs/SARs and synaptonemal complex using a series of simple nucleotide motifs]
Molekuliarnaia biologiia 1998;32(5):883-94.
1998: Fedorova E V; Rogozin I B; Ptitsyn A A; Cheriaukene O V; Kaftanovskaia E M
[The isolation and analysis of the highly repetitive DNA from the argali]
T?Sitologii?a i genetika 1998;32(5):67-74.
1998: Elisaphenko E A; Nesterova T B; Duthie S M; Ruldugina O V; Rogozin I B; Brockdorff N; Zakian S M
Repetitive DNA sequences in the common vole: cloning, characterization and chromosome localization of two novel complex repeats MS3 and MS4 from the genome of the East European vole Microtus rossiaemeridionalis.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 1998;6(5):351-60.
1998: Glazko G B; Milanesi L; Rogozin I B
The subclass approach for mutational spectrum analysis: application of the SEM algorithm.
Journal of theoretical biology 1998;192(4):475-87.
1998: Kozmin S G; Schaaper R M; Shcherbakova P V; Kulikov V N; Noskov V N; Guetsova M L; Alenin V V; Rogozin I B; Makarova K S; Pavlov Y I
Multiple antimutagenesis mechanisms affect mutagenic activity and specificity of the base analog 6-N-hydroxylaminopurine in bacteria and yeast.
Mutation research 1998;402(1-2):41-50.
1997: Pozdniakov M A; Rogozin I B; Babenko V N; Kolchanov N A
[Neighboring base effect on emergence of spontaneous mutations in human pseudogenes]
Doklady Akademii nauk / [Rossiiskaia akademii nauk] 1997;356(4):566-8.
1997: Glazko G V; Rogozin I B; Glazko V I; Zelenaia L B; Sozinov A A
[Experimental and calculated spectra of the amplicons UBC-85 and UBC-126 (RAPD-PCR)]
T?Sitologii?a i genetika 1997;31(5):79-87.
1997: Rogozin I B; Milanesi L
Analysis of donor splice sites in different eukaryotic organisms.
Journal of molecular evolution 1997;45(1):50-9.
1997: Mostardini M; Appierto V; Pergolizzi R; Zucchi I; Mumm S; DeBellis G; Milanesi L; Rogozin I B; Biunno I
Identification of a U7snRNA homologue mapping to the human Xq27.1 region, between the DXS1232 and DXS119 loci.
Gene 1997;187(2):221-4.
1997: Biunno I; Rogozin I B; Appierto V; Milanesi L; Mostardini M; Mumm S; Pergolizzi R; Zucchi I; De Bellis G
Sequence and gene content in 35 kb genomic clone mapping in the human Xq27.1 region.
DNA sequence : the journal of DNA sequencing and mapping 1997;8(1-2):1-15.
1996: Mayorov V I; Adkison L R; Vorobyeva N V; Khrapov E A; Kholodhov N G; Rogozin I B; Nesterova T B; Protopopov A I; Sablina O V; Graphodatsky A S; Zakian S M
Organization and chromosomal localization of a B1-like containing repeat of Microtus subarvalis.
Mammalian genome : official journal of the International Mammalian Genome Society 1996;7(8):593-7.
1996: Rogozin I B; Milanesi L; Kolchanov N A
Gene structure prediction using information on homologous protein sequence.
Computer applications in the biosciences : CABIOS 1996;12(3):161-70.
1996: Rogozin I B; Sredneva N E; Kolchanov N A
Somatic hypermutagenesis in immunoglobulin genes. III. Somatic mutations in the chicken light chain locus.
Biochimica et biophysica acta 1996;1306(2-3):171-8.
1996: Ptitsyn A A; Rogozin I B; Grigorovich D A; Strelets V B; Kel' A E; Milanezi L; Kolchanov N A
[Computer system "AutoGene" for automatic analysis of nucleotide sequences]
Molekuliarnaia biologiia 1996;30(2):432-41.
1995: Rogozin I B; Glasko G V; Latkin E I
Subclass approach for mutational spectrum analysis.
Proceedings / ... International Conference on Intelligent Systems for Molecular Biology ; ISMB. International Conference on Intelligent Systems for Molecular Biology 1995;3():309-13.
1993: Kholodilov N G; Mayorov V I; Mullokandov M R; Cheryaukene O V; Nesterova T B; Rogozin I B; Zakian S M
LINE-1 element in the vole Microtus subarvalis.
Mammalian genome : official journal of the International Mammalian Genome Society 1993;4(10):624-6.
1992: Rogozin I B; Kolchanov N A
Somatic hypermutagenesis in immunoglobulin genes. II. Influence of neighbouring base sequences on mutagenesis.
Biochimica et biophysica acta 1992;1171(1):11-8.
1992: Fillippov V A; Fedorova E V; Rogozin I B; Kholodilov N G; Ruvinskii A O
[Structure and evolution of the D17LeH80-like locus in the murine t-complex]
Genetika 1992;28(5):124-35.
1992: Filippov V A; Fedorova E V; Rogozin I B; Kholodilov N G; Ruvinsky A O
Molecular organization and evolution of the D17Leh80-like loci in the mouse t complex.
Mammalian genome : official journal of the International Mammalian Genome Society 1992;3(1):11-6.
1992: Kholodilov N G; Maiorov V I; Mullakandov M R; Cheriaukene O V; Nesterova T B; Rogozin I B; Zakiian S M
[The L1-element of the vole, Microtus subarvalis]
Doklady Akademii nauk / [Rossiiskaia akademii nauk] 1992;323(5):963-5.
1991: Rogozin I B; Solovyov V V; Kolchanov N A
Somatic hypermutagenesis in immunoglobulin genes. I. Correlation between somatic mutations and repeats. Somatic mutation properties and clonal selection.
Biochimica et biophysica acta 1991;1089(2):175-82.
1991: Lavrentieva M V; Rivkin M I; Shilov A G; Kobetz M L; Rogozin I B; Serov O L
B2-like repetitive sequence from the X chromosome of the American mink (Mustela vison).
Mammalian genome : official journal of the International Mammalian Genome Society 1991;1(3):165-70.
1991: Lavrent'eva M V; Rivkin M I; Godovikov A A; Rogozin I B; Serov O L
[An unusual structure of the B2-like repeat of the American mink]
Doklady Akademii nauk SSSR 1991;320(3):726-8.
1990: Naiakshin A M; Belousov E S; Taranin A V; Bogachev S S; Rogozin I B; Baranov O K
[Cloning and sequencing of immunoglobin lambda-chain cDNA in american mink (Mustela vison]
Genetika 1990;26(8):1527-31.
1990: Serov O L; Zhdanova N S; Pack S D; Lavrentieva M V; Shilov A G; Rivkin M I; Matyakhina L D; Dráber P; Kerkis A Y; Rogozin I B
The mink X chromosome: organization and inactivation.
Progress in clinical and biological research 1990;344():589-618.
1989: Kolchanov N A; Rogozin I B; Solov'ev V V
[Theoretical analysis of mechanisms of spontaneous and induced mutations in DNA based on repeated sequences]
Genetika 1989;25(9):1690-8.
1989: Lavrent'eva M V; Rivkin M I; Shilov A G; Kobets M L; Rogozin I B; Serov O L
[B2-like repetitive sequence in the genome of the American mink]
Doklady Akademii nauk SSSR 1989;307(1):226-8.
1989: Rogozin I B; Solov'ev V V
[Somatic hypermutagenesis in immunoglobulin genes. II. Properties of somatic mutations and clonal selection]
Molekuliarnaia biologiia 1989;23(3):795-802.
1987: Kolchanov N A; Solovyov V V; Rogozin I B
Peculiarities of immunoglobulin gene structures as a basis for somatic mutation emergence.
FEBS letters 1987;214(1):87-91.
1985: Kolchanov N A; Solov'ev V V; Rogozin I B
[Molecular mechanism of somatic hypermutagenesis in immunoglobulin genes]
Doklady Akademii nauk SSSR 1985;281(4):994-9.

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