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Fabien Campagne

Research Profile

Activities & Behaviors

Genes & Molecular Sequences

Amino Acid Sequences

Occupations

Computational Biology

Concepts & Ideas

Procedures

Sequence Alignment

Chemicals & Drugs

Living Beings

Mouse

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Publications

TOP 3
J-E Oh; Rita Shaknovich; S Andrews; Fabien Campagne; N Chambwe; J Gal; G Gleason; S Klein; A Melnick; M Toth
Differential gene body methylation and reduced expression of cell adhesion and neurotransmitter receptor genes in adverse maternal environment.
Jeremy Koppel; Dan Rujescu; Valérie Vingtdeux; Fabien Campagne; Julien Chapuis; Erica Christen; Peter Davies; Ute Dreses-Werringloer; Michael Ewers; Marc Gordon; Blaine Greenwald; Harald Hampel; Philippe Marambaud
CALHM1 P86L polymorphism modulates CSF Aβ levels in cognitively healthy individuals at risk for Alzheimer's disease.
Kevin C Dorff; Nyasha Chambwe; Marko Srdanovic; Fabien Campagne
BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.

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All Publications

2013: J-E Oh; Rita Shaknovich; S Andrews; Fabien Campagne; N Chambwe; J Gal; G Gleason; S Klein; A Melnick; M Toth
Differential gene body methylation and reduced expression of cell adhesion and neurotransmitter receptor genes in adverse maternal environment.
Translational psychiatry 2013;3():e218.
2011: Jeremy Koppel; Dan Rujescu; Valérie Vingtdeux; Fabien Campagne; Julien Chapuis; Erica Christen; Peter Davies; Ute Dreses-Werringloer; Michael Ewers; Marc Gordon; Blaine Greenwald; Harald Hampel; Philippe Marambaud
CALHM1 P86L polymorphism modulates CSF Aβ levels in cognitively healthy individuals at risk for Alzheimer's disease.
Molecular medicine (Cambridge, Mass.) 2011;17(9-10):974-9.
2010: Kevin C Dorff; Nyasha Chambwe; Marko Srdanovic; Fabien Campagne
BDVal: reproducible large-scale predictive model development and validation in high-throughput datasets.
Bioinformatics (Oxford, England) 2010;26(19):2472-3.
2010: George Khelashvili; Kevin Dorff; Jufang Shan; Marta Camacho-Artacho; Lucy Skrabanek; Bas Vroling; Michel Bouvier; Lakshmi A Devi; Susan R George; Jonathan A Javitch; Martin J Lohse; Graeme Milligan; Richard Neubig; Krzysztof Palczewski; Marc Parmentier; Jean-Philippe Pin; Gert Vriend; Fabien Campagne; Marta Filizola
GPCR-OKB: the G Protein Coupled Receptor Oligomer Knowledge Base.
Bioinformatics (Oxford, England) 2010;26(14):1804-5.
2010: Maria E Figueroa; Sanne Lugthart; Yushan Li; Claudia Erpelinck-Verschueren; Xutao Deng; Paul J Christos; Elizabeth Schifano; James Booth; Wim van Putten; Lucy Skrabanek; Fabien Campagne; Madhu Mazumdar; John M Greally; Peter J M Valk; Bob Löwenberg; Ruud Delwel; Ari Melnick
DNA methylation signatures identify biologically distinct subtypes in acute myeloid leukemia.
Cancer cell 2010;17(1):13-27.
2010: Xutao Deng; Fabien Campagne
Introduction to the development and validation of predictive biomarker models from high-throughput data sets.
Methods in molecular biology (Clifton, N.J.) 2010;620():435-70.
2009: Susana B Salvarezza; sylvie deborde; Ryan Schreiner; Fabien Campagne; Michael kessels; Britta Qualmann; Alfredo Caceres; Geri Kreitzer; Enrique Rodriguez-Boulan
LIM kinase 1 and cofilin regulate actin filament population required for dynamin-dependent apical carrier fission from the trans-Golgi network.
Molecular biology of the cell 2009;20(1):438-51.
2008: jean-charles lambert; Fabien Campagne; Philippe Marambaud
[CALHM1, a novel gene to blame in Alzheimer disease].
Médecine sciences : M/S 2008;24(11):923-4.
2008: Ute Dreses-Werringloer; jean-charles lambert; Valérie Vingtdeux; Haitian Zhao; Horia Vais; Adam Siebert; Ankit Jain; Jeremy Koppel; Anne Rovelet-Lecrux; Didier Hannequin; Florence Pasquier; Daniela Galimberti; Elio Scarpini; D M A Mann; Corinne Lendon; Dominique Campion; Philippe Amouyel; Peter Davies; J Kevin Foskett; Fabien Campagne; Philippe Marambaud
A polymorphism in CALHM1 influences Ca2+ homeostasis, Abeta levels, and Alzheimer's disease risk.
Cell 2008;133(7):1149-61.
2008: Daniel Aguilar; Lucy Skrabanek; Steven S Gross; Baldo Oliva; Fabien Campagne
Beyond tissueInfo: functional prediction using tissue expression profile similarity searches.
Nucleic acids research 2008;36(11):3728-37.
2008: Fabien Campagne
Objective and automated protocols for the evaluation of biomedical search engines using No Title Evaluation protocols.
BMC bioinformatics 2008;9():132.
2007: Lucy Skrabanek; Marta Murcia; Michel Bouvier; Lakshmi Devi; Susan R George; Martin J Lohse; Graeme Milligan; Richard Neubig; Krzysztof Palczewski; Marc Parmentier; Jean-Philippe Pin; Gert Vriend; Jonathan A Javitch; Fabien Campagne; Marta Filizola
Requirements and ontology for a G protein-coupled receptor oligomerization knowledge base.
BMC bioinformatics 2007;8():177.
2006: Stephen Rohan; Jiangling J Tu; Jean Kao; Piali Mukherjee; Fabien Campagne; Xi K Zhou; Elizabeth Hyjek; Miguel A Alonso; Yao-Tseng Chen
Gene expression profiling separates chromophobe renal cell carcinoma from oncocytoma and identifies vesicular transport and cell junction proteins as differentially expressed genes.
Clinical cancer research : an official journal of the American Association for Cancer Research 2006;12(23):6937-45.
2006: Gang Hao; Derakhshan Behrad; Lei Shi; Fabien Campagne; Steven S Gross
SNOSID, a proteomic method for identification of cysteine S-nitrosylation sites in complex protein mixtures.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(4):1012-7.
2006: Fabien Campagne; Lucy Skrabanek
Mining expressed sequence tags identifies cancer markers of clinical interest.
BMC bioinformatics 2006;7():481.
2005: Nicolas Le Novère; Andrew Finney; Michael Hucka; Upinder S Bhalla; Fabien Campagne; Julio Collado-Vides; Edmund J Crampin; Matt Halstead; Edda Klipp; Pedro Mendes; Poul Fønss Nielsen; Herbert M Sauro; Bruce Shapiro; Jacky L Snoep; Hugh D Spence; Barry L Wanner
Minimum information requested in the annotation of biochemical models (MIRIAM).
Nature biotechnology 2005;23(12):1509-15.
2005: Michelle Carter; Xu Chen; Bozena Slowinska; Sharon Minnerath; sara glickstein; Lei Shi; Fabien Campagne; HAREL WEINSTEIN; M Elizabeth Ross
Crooked tail (Cd) model of human folate-responsive neural tube defects is mutated in Wnt coreceptor lipoprotein receptor-related protein 6.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(36):12843-8.
2005: Marco Palma; Juan Zurita; Julian A Ferreras; Stefan Worgall; Davise H Larone; Lei Shi; Fabien Campagne; Luis E N Quadri
Pseudomonas aeruginosa SoxR does not conform to the archetypal paradigm for SoxR-dependent regulation of the bacterial oxidative stress adaptive response.
Infection and immunity 2005;73(5):2958-66.
2005: Lei Shi; Fabien Campagne
Building a protein name dictionary from full text: a machine learning term extraction approach.
BMC bioinformatics 2005;6():88.
2005: Marko Srdanovic; Ulf Schenk; Michael Schwieger; Fabien Campagne
Critical evaluation of the JDO API for the persistence and portability requirements of complex biological databases.
BMC bioinformatics 2005;6():5.
2004: Fabien Campagne; Susana R Neves; Chiung-wen Chang; Lucy Skrabanek; Prahlad T Ram; Ravi Iyengar; HAREL WEINSTEIN
Quantitative information management for the biochemical computation of cellular networks.
Science's STKE : signal transduction knowledge environment 2004;2004(248):pl11.
2004: Nathalie Dutheil; Miran Yoon-Robarts; Peter Ward; Els Henckaerts; Lucy Skrabanek; Kenneth I Berns; Fabien Campagne; R Michael Linden
Characterization of the mouse adeno-associated virus AAVS1 ortholog.
Journal of virology 2004;78(16):8917-21.
2003: Fabien Campagne; Emmanuel Bettler; Gert Vriend; HAREL WEINSTEIN
Batch mode generation of residue-based diagrams of proteins.
Bioinformatics (Oxford, England) 2003;19(14):1854-5.
2003: Lucy Skrabanek; Fabien Campagne; HAREL WEINSTEIN
Building protein diagrams on the web with the residue-based diagram editor RbDe.
Nucleic acids research 2003;31(13):3856-8.
2003: Florence Horn; Emmanuel Bettler; Laerte Oliveira; Fabien Campagne; Fred Cohen; Gert Vriend
GPCRDB information system for G protein-coupled receptors.
Nucleic acids research 2003;31(1):294-7.
2002: Fabien Campagne
Interoperability calls for an unusual mix of skills.
Nature 2002;418(6894):125.
2001: Lucy Skrabanek; Fabien Campagne
TissueInfo: high-throughput identification of tissue expression profiles and specificity.
Nucleic acids research 2001;29(21):E102-2.
2001: Marianna Max; Y G Shanker; Liquan Huang; Minqing Rong; Zhan Liu; Fabien Campagne; HAREL WEINSTEIN; Sami Damak; Robert Margolskee
Tas1r3, encoding a new candidate taste receptor, is allelic to the sweet responsiveness locus Sac.
Nature genetics 2001;28(1):58-63.
2000: Fabien Campagne
Clustalnet: the joining of Clustal and CORBA.
Bioinformatics (Oxford, England) 2000;16(7):606-12.
2000: K Konvicka; Fabien Campagne; HAREL WEINSTEIN
Interactive construction of residue-based diagrams of proteins: the RbDe web service.
Protein engineering 2000;13(6):395-6.
1999: Fabien Campagne; R Jestin; JL Reversat; JM Bernassau; Bernard Maigret
Visualisation and integration of G protein-coupled receptor related information help the modelling: description and applications of the Viseur program.
Journal of computer-aided molecular design 1999;13(6):625-43.
1999: Fabien Campagne; HAREL WEINSTEIN
Schematic representation of residue-based protein context-dependent data: an application to transmembrane proteins.
Journal of molecular graphics & modelling 1999;17(3-4):207-13.
1998: Fabien Campagne; Bernard Maigret
Multiple sequence alignment in HTML: colored, possibly hyperlinked, compact representations.
Journal of molecular graphics & modelling 1998;16(1):6-10, 34-5.
1998: Florence Horn; J Weare; Margot W Beukers; S Hörsch; Amos Bairoch; W Chen; Oyvind Edvardsen; Fabien Campagne; Gert Vriend
GPCRDB: an information system for G protein-coupled receptors.
Nucleic acids research 1998;26(1):275-9.