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Richard Kumaran Kandasamy

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Harsh Pawar; Santosh Renuse; Nandini A Sahasrabuddhe; Nirujogi Raja Sekhar; Jyoti Sharma; Abhilash Venugopal; Milind S Patole; Raghothama Chaerkady; H C Harsha; Richard Kumaran Kandasamy; Shivakumar Keerthikumar; Dhanashree S Kelkar; Sweta N Khobragade; Ghantasala S Sameer Kumar; Babylakshmi Muthusamy; Harshal Nemade; Akhilesh Pandey
A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani.
Raghothama Chaerkady; Aditya P Dash; Bernard Delanghe; Sutopa B Dwivedi; Derese Getnet; Richard Kumaran Kandasamy; Dhanashree S Kelkar; T S Keshava Prasad; Min-Sik Kim; Ashwani Kumar; Nirbhay Kumar; Robert M MacCallum; Godfree Mlambo; Ajeet Kumar Mohanty; Babylakshmi Muthusamy; Mobolaji Okulate; Harsh Pawar; Sneha M Pinto; Santosh Renuse; Nandini A Sahasrabuddhe; Nirujogi Raja Sekhar; Rakesh Sharma; Yi Yang; Jun Zhong; Akhilesh Pandey
A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.
Harsh Pawar; Thotterthodi Subrahmanya Keshava Prasad; Chennagiri Shrinivasamurthy Premalatha; Sudha Rajagopalan; Santosh Renuse; Nandini A Sahasrabuddhe; Jyoti Sharma; M Vijayakumar; Raghothama Chaerkady; H C Harsha; Richard Kumaran Kandasamy; Manoj Kumar Kashyap; Kariyanakatte Veeraiah Veerendra Kumar; Praveen Kumar; Rekha V Kumar; Rekha V Kumar; Jagadeesha Maharudraiah; Arivusudar Marimuthu; Bipin Nair; Akhilesh Pandey
Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery.

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All Publications

2012: Harsh Pawar; Santosh Renuse; Nandini A Sahasrabuddhe; Nirujogi Raja Sekhar; Jyoti Sharma; Abhilash Venugopal; Milind S Patole; Raghothama Chaerkady; H C Harsha; Richard Kumaran Kandasamy; Shivakumar Keerthikumar; Dhanashree S Kelkar; Sweta N Khobragade; Ghantasala S Sameer Kumar; Babylakshmi Muthusamy; Harshal Nemade; Akhilesh Pandey
A proteogenomic approach to map the proteome of an unsequenced pathogen - Leishmania donovani.
Proteomics 2012;12(6):832-44.
2011: Raghothama Chaerkady; Aditya P Dash; Bernard Delanghe; Sutopa B Dwivedi; Derese Getnet; Richard Kumaran Kandasamy; Dhanashree S Kelkar; T S Keshava Prasad; Min-Sik Kim; Ashwani Kumar; Nirbhay Kumar; Robert M MacCallum; Godfree Mlambo; Ajeet Kumar Mohanty; Babylakshmi Muthusamy; Mobolaji Okulate; Harsh Pawar; Sneha M Pinto; Santosh Renuse; Nandini A Sahasrabuddhe; Nirujogi Raja Sekhar; Rakesh Sharma; Yi Yang; Jun Zhong; Akhilesh Pandey
A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry.
Genome research 2011;21(11):1872-81.
2011: Harsh Pawar; Thotterthodi Subrahmanya Keshava Prasad; Chennagiri Shrinivasamurthy Premalatha; Sudha Rajagopalan; Santosh Renuse; Nandini A Sahasrabuddhe; Jyoti Sharma; M Vijayakumar; Raghothama Chaerkady; H C Harsha; Richard Kumaran Kandasamy; Manoj Kumar Kashyap; Kariyanakatte Veeraiah Veerendra Kumar; Praveen Kumar; Rekha V Kumar; Rekha V Kumar; Jagadeesha Maharudraiah; Arivusudar Marimuthu; Bipin Nair; Akhilesh Pandey
Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery.
Cancer biology & therapy 2011;12(6):510-22.
2011: Min-Sik Kim; Bernard Delanghe; Richard Kumaran Kandasamy; Jun Zhong; Akhilesh Pandey
Systematic evaluation of alternating CID and ETD fragmentation for phosphorylated peptides.
Proteomics 2011;11(12):2568-72.
2011: Jun Zhong; Raghothama Chaerkady; Richard Kumaran Kandasamy; Marjan Gucek; Robert N Cole; Akhilesh Pandey
The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC.
Journal of proteomics 2011;74(3):294-303.
2010: Manoj Kumar Kashyap; H C Harsha; Santosh Renuse; Harsh Pawar; Nandini A Sahasrabuddhe; Min-Sik Kim; Arivusudar Marimuthu; Shivakumar Keerthikumar; Babylakshmi Muthusamy; Richard Kumaran Kandasamy; Yashwanth Subbannayya; Thottethodi Subrahmanya Keshava Prasad; Riaz Mahmood; Raghothama Chaerkady; Meltzer Stephen J.; Rekha V Kumar; Anil K Rustgi; Akhilesh Pandey
SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome.
Cancer biology & therapy 2010;10(8):796-810.
2010: Yi Yang; Raghothama Chaerkady; Richard Kumaran Kandasamy; Tai-Chung Huang; Lakshmi Dhevi N Selvan; Sutopa B Dwivedi; Oliver A Kent; Joshua T Mendell; Akhilesh Pandey
Identifying targets of miR-143 using a SILAC-based proteomic approach.
Molecular bioSystems 2010;6(10):1873-82.
2010: Emek Demir; Michael P Cary; Suzanne Paley; Ken Fukuda; Christian Lemer; Imre Vastrik; Guanming Wu; Peter D'Eustachio; Carl Schaefer; Joanne Luciano; Frank Schacherer; Irma Martinez-Flores; Zhenjun Hu; Veronica Jimenez-Jacinto; Geeta Joshi-Tope; Richard Kumaran Kandasamy; Alejandra C Lopez-Fuentes; Huaiyu Mi; Elgar Pichler; Igor Rodchenkov; Andrea Splendiani; Sasha Tkachev; Jeremy Zucker; Gopal Gopinath; Harsha Rajasimha; Ranjani Ramakrishnan; Imran Shah; Mustafa Syed; Nadia Anwar; Ozgün Babur; Michael Blinov; Erik Brauner; Dan Corwin; Sylva Donaldson; Frank Gibbons; Robert Goldberg; Peter Hornbeck; Augustin Luna; Peter Murray-Rust; Eric Neumann; Oliver Reubenacker; Matthias Samwald; Martijn van Iersel; Sarala Wimalaratne; Keith Allen; Burk Braun; Michelle Whirl-Carrillo; Kei-Hoi Cheung; Kam Dahlquist; Andrew Finney; Marc Gillespie; Elizabeth Glass; Li Gong; Robin Haw; Michael Honig; Olivier Hubaut; David Kane; Shiva Krupa; Martina Kutmon; Julie Leonard; Debbie Marks; David Merberg; Victoria Petri; Alex Pico; Dean Ravenscroft; Liya Ren; Nigam Shah; Margot Sunshine; Rebecca Tang; Ryan Whaley; Stan Letovksy; Kenneth H Buetow; Andrey Rzhetsky; Vincent Schachter; Bruno S Sobral; Ugur Dogrusoz; Shannon McWeeney; Mirit Aladjem; Ewan Birney; Julio Collado-Vides; Susumu Goto; Michael Hucka; Nicolas Le Novère; Natalia Maltsev; Akhilesh Pandey; Paul Thomas; Edgar Wingender; Peter D Karp; Chris Sander; Oliver Ruebenacker; Gary D Bader
The BioPAX community standard for pathway data sharing.
Nature biotechnology 2010;28(9):935-42.
2010: Min-Sik Kim; Richard Kumaran Kandasamy; Raghothama Chaerkady; Akhilesh Pandey
Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer.
Journal of the American Society for Mass Spectrometry 2010;21(9):1606-11.
2010: Raghothama Chaerkady; Candace Kerr; Richard Kumaran Kandasamy; Arivusudar Marimuthu; John D Gearhart; Akhilesh Pandey
Comparative proteomics of human embryonic stem cells and embryonal carcinoma cells.
Proteomics 2010;10(7):1359-73.
2010: Richard Kumaran Kandasamy; S Sujatha Mohan; Rajesh Raju; Shivakumar Keerthikumar; Ghantasala S Sameer Kumar; Abhilash K Venugopal; Deepthi Telikicherla; J Daniel Navarro; M Suresh; Christian Pecquet; Sashi Kanth Gollapudi; Sudhir Gopal Tattikota; Shyam Mohan; Hariprasad Padhukasahasram; Yashwanth Subbannayya; renu goel; Harrys K C Jacob; Jun Zhong; Raja Sekhar; Vishalakshi Nanjappa; Lavanya Balakrishnan; Roopashree Subbaiah; Y L Ramachandra; B Abdul Rahiman; T S Keshava Prasad; Jian-Xin Lin; Jon C D Houtman; Stephen Desiderio; Jean-Christophe Renauld; Stefan N Constantinescu; Osamu Ohara; Toshio Hirano; Masato Kubo; Sujay Singh; Purvesh Khatri; Sorin Draghici; Gary D Bader; Chris Sander; Warren J Leonard; Akhilesh Pandey
NetPath: a public resource of curated signal transduction pathways.
Genome biology 2010;11(1):R3.
2009: Shivakumar Keerthikumar; Sahely Bhadra; Richard Kumaran Kandasamy; Rajesh Raju; Y L Ramachandra; Chiranjib Bhattacharyya; Kohsuke Imai; Osamu Ohara; Sujatha Mohan; Akhilesh Pandey
Prediction of candidate primary immunodeficiency disease genes using a support vector machine learning approach.
DNA research : an international journal for rapid publication of reports on genes and genomes 2009;16(6):345-51.
2009: Richard Kumaran Kandasamy; Shivakumar Keerthikumar; Rajesh Raju; T S Keshava Prasad; Y L Ramachandra; Sujatha Mohan; Akhilesh Pandey
PathBuilder--open source software for annotating and developing pathway resources.
Bioinformatics (Oxford, England) 2009;25(21):2860-2.
2009: Richard Kumaran Kandasamy; Akhilesh Pandey; Henrik Molina
Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
Analytical chemistry 2009;81(17):7170-80.
2009: H C Harsha; Richard Kumaran Kandasamy; Prathibha Ranganathan; Sandhya Rani; Subhashri Ramabadran; Sashikanth Gollapudi; Lavanya Balakrishnan; Sutopa B Dwivedi; Deepthi Telikicherla; Lakshmi Dhevi N Selvan; renu goel; M Suresh; Arivusudar Marimuthu; Manoj Kashyap; Robert F Vizza; Robert J Mayer; James A Decaprio; sudhir srivastava; Samir M Hanash; Ralph Hruban; Akhilesh Pandey
A compendium of potential biomarkers of pancreatic cancer.
PLoS medicine 2009;6(4):e1000046.
2009: T S Keshava Prasad; Richard Kumaran Kandasamy; Akhilesh Pandey
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.
Methods in molecular biology (Clifton, N.J.) 2009;577():67-79.
2009: T S Keshava Prasad; renu goel; Richard Kumaran Kandasamy; Shivakumar Keerthikumar; Sameer Kumar; M Suresh; Deepthi Telikicherla; Rajesh Raju; Beema Shafreen; Abhilash Venugopal; Lavanya Balakrishnan; Arivusudar Marimuthu; Sutopa Banerjee; Devi S Somanathan; Aimy Sebastian; Sandhya Rani; Somak Ray; C J Harrys Kishore; Sashi Kanth; Mukhtar Ahmed; Manoj K Kashyap; Riaz Mohmood; Y L Ramachandra; V Krishna; B Abdul Rahiman; Sujatha Mohan; Prathibha Ranganathan; Subhashri Ramabadran; Raghothama Chaerkady; Akhilesh Pandey
Human Protein Reference Database--2009 update.
Nucleic acids research 2009;37(Database issue):D767-72.
2009: Richard Kumaran Kandasamy; Shivakumar Keerthikumar; renu goel; M Suresh; Nandini Patankar; Beema Shafreen; Santosh Renuse; Harsh Pawar; Y L Ramachandra; Pradip Acharya; Prathibha Ranganathan; Raghothama Chaerkady; T S Keshava Prasad; Akhilesh Pandey
Human Proteinpedia: a unified discovery resource for proteomics research.
Nucleic acids research 2009;37(Database issue):D773-81.
2009: Shivakumar Keerthikumar; Rajesh Raju; Richard Kumaran Kandasamy; Atsushi Hijikata; Subhashri Ramabadran; Lavanya Balakrishnan; Mukhtar Ahmed; Sandhya Rani; Lakshmi Dhevi N Selvan; Devi S Somanathan; Somak Ray; Mitali Bhattacharjee; Sashikanth Gollapudi; Y L Ramachandra; Sahely Bhadra; Chiranjib Bhattacharyya; Kohsuke Imai; Shigeaki Nonoyama; Hirokazu Kanegane; Toshio Miyawaki; Akhilesh Pandey; Osamu Ohara; Sujatha Mohan
RAPID: Resource of Asian Primary Immunodeficiency Diseases.
Nucleic acids research 2009;37(Database issue):D863-7.
2008: Henrik Molina; Rune Matthiesen; Richard Kumaran Kandasamy; Akhilesh Pandey
Comprehensive comparison of collision induced dissociation and electron transfer dissociation.
Analytical chemistry 2008;80(13):4825-35.
2008: M Suresh; Mukhtar Ahmed; Natalie G Ahn; Hainard Alexandre; Ramars Amanchy; Philip C Andrews; Joel S Bader; Brian M Balgley; Marcus Bantscheff; Keiryn Bennett; Erik Björling; Blagoy Blagoev; Ron Bose; Samir K Brahmachari; Alma S Burlingame; Xosé R Bustelo; Gerard Cagney; Greg T Cantin; Helene L Cardasis; Julio E Celis; Raghothama Chaerkady; Feixia Chu; Philip A Cole; Catherine E Costello; Robert J Cotter; David Crockett; James P DeLany; Angelo M DeMarzo; Leroi V DeSouza; Eric W Deutsch; Eric Dransfield; Gerard Drewes; Arnaud Droit; Michael J Dunn; Kojo Seys John Elenitoba-Johnson; Rob M Ewing; Jennifer E Van Eyk; Vitor Faca; Jayson Falkner; Xiangming Fang; Catherine Fenselau; Daniel Figeys; Pierre Gagné; Cecilia Gelfi; Kris Gevaert; Jeffrey M Gimble; Florian Gnad; renu goel; Pavel Gromov; Samir M Hanash; William S Hancock; H C Harsha; Gerald W Hart; Faith Hays; Fuchu He; Prashantha Hebbar; Kenny Helsens; Heiko Hermeking; Winston Hide; Karin Hjernø; Denis F Hochstrasser; Oliver Hofmann; David M Horn; Ralph Hruban; Nieves Ibarrola; Peter James; Ole N Jensen; Pia Hønnerup Jensen; Peter Jung; Richard Kumaran Kandasamy; Indu Kheterpal; Reiko F Kikuno; Ulrike Korf; Roman Körner; Bernhard Kuster; Min-Seok Kwon; Hyoung-Joo Lee; Young-Jin Lee; Michael Lefevre; Minna Lehvaslaiho; Pierre Lescuyer; Fredrik Levander; Megan S Lim; Christian Löbke; Joseph A Loo; Matthias Mann; Lennart Martens; Juan Martinez-Heredia; Mark McComb; James McRedmond; Alexander Mehrle; Rajasree Menon; Christine A Miller; Harald Mischak; S Sujatha Mohan; Riaz Mohmood; Henrik Molina; Michael F Moran; James D Morgan; Robert Moritz; Martine Morzel; David C Muddiman; Anuradha Nalli; J Daniel Navarro; Thomas A Neubert; Osamu Ohara; Rafael Oliva; Gilbert S Omenn; Masaaki Oyama; Young-Ki Paik; Kyla Pennington; Rainer Pepperkok; Balamurugan Periaswamy; Emanuel F Petricoin; Guy G Poirier; T S Keshava Prasad; Samuel O Purvine; B Abdul Rahiman; Prasanna Ramachandran; Y L Ramachandra; Robert H Rice; Jens Rick; Ragna H Ronnholm; Johanna Salonen; jean-charles sanchez; Thierry Sayd; Beerelli Seshi; Kripa Shankari; Shi Jun Sheng; Vivekananda Shetty; K Shivakumar; Richard J Simpson; Ravi Sirdeshmukh; K W Michael Siu; Jeffrey Smith; Richard D Smith; David J States; Sumio Sugano; Matthew Sullivan; Giulio Superti-Furga; Maarit Takatalo; Visith Thongboonkerd; Jonathan C Trinidad; Mathias Uhlen; Joël Vandekerckhove; Julian Vasilescu; Timothy D Veenstra; José-Manuel Vidal-Taboada; Mauno Vihinen; Robin Wait; Xiaoyue Wang; Stefan Wiemann; Billy Wu; Tao Xu; John R Yates; Jun Zhong; Ming Zhou; Yunping Zhu; Petra Zurbig; Akhilesh Pandey
Human Proteinpedia enables sharing of human protein data.
Nature biotechnology 2008;26(2):164-7.
2006: M Suresh; Balamurugan Periaswamy; T K B Gandhi; Richard Kumaran Kandasamy; Shubha Suresh; Riaz Mohmood; Y L Ramachandra; Akhilesh Pandey
An evaluation of human protein-protein interaction data in the public domain.
BMC bioinformatics 2006;7 Suppl 5():S19.
2006: Gopa R Mishra; M Suresh; Richard Kumaran Kandasamy; N Kannabiran; Shubha Suresh; P Bala; K Shivakumar; N Anuradha; Raghunath Reddy; T Madhan Raghavan; Shalini Menon; G Hanumanthu; Malvika Gupta; Sapna Upendran; Shweta Gupta; M Mahesh; Bincy Jacob; Pinky Mathew; Pritam Chatterjee; K S Arun; Salil Sharma; K N Chandrika; Nandan Deshpande; Kshitish Palvankar; R Raghavnath; R Krishnakanth; Hiren Karathia; B Rekha; Rashmi Nayak; G Vishnupriya; H G Mohan Kumar; M Nagini; G S Sameer Kumar; Rojan Jose; P Deepthi; S Sujatha Mohan; T K B Gandhi; H C Harsha; Krishna S Deshpande; Malabika Sarker; T S Keshava Prasad; Akhilesh Pandey
Human protein reference database--2006 update.
Nucleic acids research 2006;34(Database issue):D411-4.