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Michael McClelland

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Devices

Oligonucleotide Array Sequence Analysis

Concepts & Ideas

Procedures

Polymerase Chain Reaction

Chemicals & Drugs

Living Beings

Genes & Molecular Sequences

Physiology

Bacterial Gene Expression Regulation

Phenomena

DNA Fingerprinting

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Co-Publications
Name
40
Porwollik, Steffen
18
Welsh, John
8
Trenkle, T
8
Fang, Ferric
7
Frye, Jonathan
7
Rondeau, Gaelle
7
Florea, Liliana
6
Wang, Yipeng
6
Sobral, Bruno
6
Wong, Rita Mei-Yi
6
Mathieu-Daudé, Françoise
6
Mercola, Dan
5
Kullmann, Frank
5
Judex, Martin
5
Navarre, William Wiley

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Publications

TOP 3
Xia Xiao-Qin; McClelland Michael; Porwollik Steffen; Song Wenzhi; Cong Xianling; Wang Yipeng
WebArrayDB: cross-platform microarray data analysis and public data repository.
Santiviago Carlos A; Reynolds M Megan; Porwollik Steffen; Choi Sang-Ho; Long Fred; Andrews-Polymenis Helene L; McClelland Michael
Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice.
Andrews-Polymenis Helene L; Santiviago Carlos A; McClelland Michael
Novel genetic tools for studying food-borne Salmonella.

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All Publications

2009: Xia Xiao-Qin; McClelland Michael; Porwollik Steffen; Song Wenzhi; Cong Xianling; Wang Yipeng
WebArrayDB: cross-platform microarray data analysis and public data repository.
Bioinformatics (Oxford, England) 2009;25(18):2425-9.
2009: Santiviago Carlos A; Reynolds M Megan; Porwollik Steffen; Choi Sang-Ho; Long Fred; Andrews-Polymenis Helene L; McClelland Michael
Analysis of pools of targeted Salmonella deletion mutants identifies novel genes affecting fitness during competitive infection in mice.
PLoS pathogens 2009;5(7):e1000477.
2009: Andrews-Polymenis Helene L; Santiviago Carlos A; McClelland Michael
Novel genetic tools for studying food-borne Salmonella.
Current opinion in biotechnology 2009;20(2):149-57.
2009: Yoon Hyunjin; McDermott Jason E; Porwollik Steffen; McClelland Michael; Heffron Fred
Coordinated regulation of virulence during systemic infection of Salmonella enterica serovar Typhimurium.
PLoS pathogens 2009;5(2):e1000306.
2009: Koziol James A; Feng Anne C; Jia Zhenyu; Wang Yipeng; Goodison Seven; McClelland Michael; Mercola Dan
The wisdom of the commons: ensemble tree classifiers for prostate cancer prognosis.
Bioinformatics (Oxford, England) 2009;25(1):54-60.
2009: Ansong Charles; Yoon Hyunjin; Porwollik Steffen; Mottaz-Brewer Heather; Petritis Brianne O; Jaitly Navdeep; Adkins Joshua N; McClelland Michael; Heffron Fred; Smith Richard D
Global systems-level analysis of Hfq and SmpB deletion mutants in Salmonella: implications for virulence and global protein translation.
PloS one 2009;4(3):e4809.
2009: Merighi Massimo; Septer Alecia N; Carroll-Portillo Amanda; Bhatiya Aditi; Porwollik Steffen; McClelland Michael; Gunn John S
Genome-wide analysis of the PreA/PreB (QseB/QseC) regulon of Salmonella enterica serovar Typhimurium.
BMC microbiology 2009;9():42.
2008: Papp-Wallace Krisztina M; Nartea Margaret; Kehres David G; Porwollik Steffen; McClelland Michael; Libby Stephen J; Fang Ferric C; Maguire Michael E
The CorA Mg2+ channel is required for the virulence of Salmonella enterica serovar typhimurium.
Journal of bacteriology 2008;190(19):6517-23.
2008: Scaria Joy; Palaniappan Raghavan U M; Chiu David; Phan Julie Ann; Ponnala Lalit; McDonough Patrick; Grohn Yrjo T; Porwollik Steffen; McClelland Michael; Chiou Chien-Shun; Chu Chishih; Chang Yung-Fu
Microarray for molecular typing of Salmonella enterica serovars.
Molecular and cellular probes 2008;22(4):238-43.
2008: Arrach Nabil; Porwollik Steffen; Cheng Pui; Cho Ann; Long Fred; Choi Sang-Ho; McClelland Michael
Salmonella serovar identification using PCR-based detection of gene presence and absence.
Journal of clinical microbiology 2008;46(8):2581-9.
2008: Arrach Nabil; Zhao Ming; Porwollik Steffen; Hoffman Robert M; McClelland Michael
Salmonella promoters preferentially activated inside tumors.
Cancer research 2008;68(12):4827-32.
2008: Risques Rosa Ana; Rondeau Gaelle; Judex Martin; McClelland Michael; Welsh John
Assessment of gene expression in many samples using vertical arrays.
Nucleic acids research 2008;36(10):e60.
2008: Hoemme Claudia; Peerzada Abdul; Behre Gerhard; Wang Yipeng; McClelland Michael; Nieselt Kay; Zschunke Matthias; Disselhoff Christine; Agrawal Shuchi; Isken Fabienne; Tidow Nicola; Berdel Wolfgang E; Serve Hubert; Müller-Tidow Carsten
Chromatin modifications induced by PML-RARalpha repress critical targets in leukemogenesis as analyzed by ChIP-Chip.
Blood 2008;111(5):2887-95.
2008: Singh Varsha; Mishra Shrutkirti; Rao G R K; Jain Ashok Kumar; Dixit V K; Gulati Anil Kumar; Mahajan Divya; McClelland Michael; Nath Gopal
Evaluation of nested PCR in detection of Helicobacter pylori targeting a highly conserved gene: HSP60.
Helicobacter 2008;13(1):30-4.
2008: Wilson James W; Ott C Mark; Quick Laura; Davis Richard; Höner zu Bentrup Kerstin; Crabbé Aurélie; Richter Emily; Sarker Shameema; Barrila Jennifer; Porwollik Steffen; Cheng Pui; McClelland Michael; Tsaprailis George; Radabaugh Timothy; Hunt Andrea; Shah Miti; Nelman-Gonzalez Mayra; Hing Steve; Parra Macarena; Dumars Paula; Norwood Kelly; Bober Ramona; Devich Jennifer; Ruggles Ashleigh; CdeBaca Autumn; Narayan Satro; Benjamin Joseph; Goulart Carla; Rupert Mark; Catella Luke; Schurr Michael J; Buchanan Kent; Morici Lisa; McCracken James; Porter Marc D; Pierson Duane L; Smith Scott M; Mergeay Max; Leys Natalie; Stefanyshyn-Piper Heidemarie M; Gorie Dominic; Nickerson Cheryl A
Media ion composition controls regulatory and virulence response of Salmonella in spaceflight.
PloS one 2008;3(12):e3923.
2008: Arora Shilpi; Wang Yipeng; Jia Zhenyu; Vardar-Sengul Saynur; Munawar Ayla; Doctor Kutbuddin S; Birrer Michael; McClelland Michael; Adamson Eileen; Mercola Dan
Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip.
Genome biology 2008;9(11):R166.
2008: Bourret Travis J; Porwollik Steffen; McClelland Michael; Zhao Rui; Greco Todd; Ischiropoulos Harry; Vázquez-Torres Andrés
Nitric oxide antagonizes the acid tolerance response that protects Salmonella against innate gastric defenses.
PloS one 2008;3(3):e1833.
2007: Wang Qingfeng; Zhao Yifang; McClelland Michael; Harshey Rasika M
The RcsCDB signaling system and swarming motility in Salmonella enterica serovar typhimurium: dual regulation of flagellar and SPI-2 virulence genes.
Journal of bacteriology 2007;189(23):8447-57.
2007: Wilson J W; Ott C M; Höner zu Bentrup K; Ramamurthy R; Quick L; Porwollik S; Cheng P; McClelland M; Tsaprailis G; Radabaugh T; Hunt A; Fernandez D; Richter E; Shah M; Kilcoyne M; Joshi L; Nelman-Gonzalez M; Hing S; Parra M; Dumars P; Norwood K; Bober R; Devich J; Ruggles A; Goulart C; Rupert M; Stodieck L; Stafford P; Catella L; Schurr M J; Buchanan K; Morici L; McCracken J; Allen P; Baker-Coleman C; Hammond T; Vogel J; Nelson R; Pierson D L; Stefanyshyn-Piper H M; Nickerson C A
Space flight alters bacterial gene expression and virulence and reveals a role for global regulator Hfq.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(41):16299-304.
2007: Manna Dipankar; Porwollik Steffen; McClelland Michael; Tan Ruimin; Higgins N Patrick
Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins.
Molecular microbiology 2007;66(2):315-28.
2007: Thijs Inge M V; De Keersmaecker Sigrid C J; Fadda Abeer; Engelen Kristof; Zhao Hui; McClelland Michael; Marchal Kathleen; Vanderleyden Jos
Delineation of the Salmonella enterica serovar Typhimurium HilA regulon through genome-wide location and transcript analysis.
Journal of bacteriology 2007;189(13):4587-96.
2007: Navarre William Wiley; McClelland Michael; Libby Stephen J; Fang Ferric C
Silencing of xenogeneic DNA by H-NS-facilitation of lateral gene transfer in bacteria by a defense system that recognizes foreign DNA.
Genes & development 2007;21(12):1456-71.
2007: Fink Ryan C; Evans Matthew R; Porwollik Steffen; Vazquez-Torres Andres; Jones-Carson Jessica; Troxell Bryan; Libby Stephen J; McClelland Michael; Hassan Hosni M
FNR is a global regulator of virulence and anaerobic metabolism in Salmonella enterica serovar Typhimurium (ATCC 14028s).
Journal of bacteriology 2007;189(6):2262-73.
2007: Porwollik Steffen; McClelland Michael
Determination of the gene content of Salmonella genomes by microarray analysis.
Methods in molecular biology (Clifton, N.J.) 2007;394():89-103.
2007: Thijs I M V; De Keersmaecker S C J; Fadda A; Engelen K; Zhao H; McClelland M; Marchal K; Vanderleyden I
Combining omics data to unravel the regulatory network controlling Salmonella invasion of epithelial cells.
Communications in agricultural and applied biological sciences 2007;72(1):55-9.
2007: Ward William O; Swartz Carol D; Porwollik Steffen; Warren Sarah H; Hanley Nancy M; Knapp Geremy W; McClelland Michael; DeMarini David M
Toxicogenomic analysis incorporating operon-transcriptional coupling and toxicant concentration-expression response: analysis of MX-treated Salmonella.
BMC bioinformatics 2007;8():378.
2006: Wang Qingfeng; Mariconda Susana; Suzuki Asaka; McClelland Michael; Harshey Rasika M
Uncovering a large set of genes that affect surface motility in Salmonella enterica serovar Typhimurium.
Journal of bacteriology 2006;188(22):7981-4.
2006: Kang Min-Su; Besser Thomas E; Hancock Dale D; Porwollik Steffen; McClelland Michael; Call Douglas R
Identification of specific gene sequences conserved in contemporary epidemic strains of Salmonella enterica.
Applied and environmental microbiology 2006;72(11):6938-47.
2006: Faucher Sébastien P; Porwollik Steffen; Dozois Charles M; McClelland Michael; Daigle France
[Salmonella transcriptome during macrophage infection]
Médecine sciences : M/S 2006;22(10):792-3.
2006: Aguirre Andrés; Cabeza María Laura; Spinelli Silvana V; McClelland Michael; García Véscovi Eleonora; Soncini Fernando C
PhoP-induced genes within Salmonella pathogenicity island 1.
Journal of bacteriology 2006;188(19):6889-98.
2006: Navarre William Wiley; Porwollik Steffen; Wang Yipeng; McClelland Michael; Rosen Henry; Libby Stephen J; Fang Ferric C
Selective silencing of foreign DNA with low GC content by the H-NS protein in Salmonella.
Science (New York, N.Y.) 2006;313(5784):236-8.
2006: Ledeboer Nathan A; Frye Jonathan G; McClelland Michael; Jones Bradley D
Salmonella enterica serovar Typhimurium requires the Lpf, Pef, and Tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium.
Infection and immunity 2006;74(6):3156-69.
2006: Frye Jonathan; Karlinsey Joyce E; Felise Heather R; Marzolf Bruz; Dowidar Naeem; McClelland Michael; Hughes Kelly T
Identification of new flagellar genes of Salmonella enterica serovar Typhimurium.
Journal of bacteriology 2006;188(6):2233-43.
2006: Faucher Sébastien P; Porwollik Steffen; Dozois Charles M; McClelland Michael; Daigle France
Transcriptome of Salmonella enterica serovar Typhi within macrophages revealed through the selective capture of transcribed sequences.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(6):1906-11.
2006: Frye Jonathan G; Jesse Troy; Long Fred; Rondeau Gaelle; Porwollik Steffen; McClelland Michael; Jackson Charlene R; Englen Mark; Fedorka-Cray Paula J
DNA microarray detection of antimicrobial resistance genes in diverse bacteria.
International journal of antimicrobial agents 2006;27(2):138-51.
2006: Spence Jean; Duggan Brendan M; Eckhardt Colleen; McClelland Michael; Mercola Dan
Messenger RNAs under differential translational control in Ki-ras-transformed cells.
Molecular cancer research : MCR 2006;4(1):47-60.
2006: Risques Rosana; Rondeau Gaelle; Judex Martin; McClelland Michael; Welsh John
Vertical arrays: microarrays of complex mixtures of nucleic acids.
Methods in molecular biology (Clifton, N.J.) 2006;317():99-109.
2005: Wang Yipeng; Hayakawa Jun; Long Fred; Yu Qiuju; Cho Ann H; Rondeau Gaelle; Welsh John; Mittal Shalu; De Belle Ian; Adamson Eileen; McClelland Michael; Mercola Dan
"Promoter array" studies identify cohorts of genes directly regulated by methylation, copy number change, or transcription factor binding in human cancer cells.
Annals of the New York Academy of Sciences 2005;1058():162-85.
2005: Porwollik S; Santiviago C A; Cheng P; Florea L; Jackson S; McClelland M
Differences in gene content between Salmonella enterica serovar Enteritidis isolates and comparison to closely related serovars Gallinarum and Dublin.
Journal of bacteriology 2005;187(18):6545-55.
2005: Wang Yipeng; Yu Qiuju; Cho Ann H; Rondeau Gaelle; Welsh John; Adamson Eileen; Mercola Dan; McClelland Michael
Survey of differentially methylated promoters in prostate cancer cell lines.
Neoplasia (New York, N.Y.) 2005;7(8):748-60.
2005: Morales Cesar A; Porwollik Steffen; Frye Jonathan G; Kinde Hailu; McClelland Michael; Guard-Bouldin Jean
Correlation of phenotype with the genotype of egg-contaminating Salmonella enterica serovar Enteritidis.
Applied and environmental microbiology 2005;71(8):4388-99.
2005: Bang Iel-Soo; Frye Jonathan G; McClelland Michael; Velayudhan Jyoti; Fang Ferric C
Alternative sigma factor interactions in Salmonella: sigma and sigma promote antioxidant defences by enhancing sigma levels.
Molecular microbiology 2005;56(3):811-23.
2005: Monsieurs Pieter; De Keersmaecker Sigrid; Navarre William W; Bader Martin W; De Smet Frank; McClelland Michael; Fang Ferric C; De Moor Bart; Vanderleyden Jos; Marchal Kathleen
Comparison of the PhoPQ regulon in Escherichia coli and Salmonella typhimurium.
Journal of molecular evolution 2005;60(4):462-74.
2005: Navarre William Wiley; Halsey Thomas A; Walthers Don; Frye Jonathan; McClelland Michael; Potter Jennifer L; Kenney Linda J; Gunn John S; Fang Ferric C; Libby Stephen J
Co-regulation of Salmonella enterica genes required for virulence and resistance to antimicrobial peptides by SlyA and PhoP/PhoQ.
Molecular microbiology 2005;56(2):492-508.
2005: Reen F J; Boyd E F; Porwollik S; Murphy B P; Gilroy D; Fanning S; McClelland M
Genomic comparisons of Salmonella enterica serovar Dublin, Agona, and Typhimurium strains recently isolated from milk filters and bovine samples from Ireland, using a Salmonella microarray.
Applied and environmental microbiology 2005;71(3):1616-25.
2005: Jung Barbara; Barbier Valerie; Brickner Howard; Welsh John; Fotedar Arun; McClelland Michael
Mechanisms of sulindac-induced apoptosis and cell cycle arrest.
Cancer letters 2005;219(1):15-25.
2005: Frye Jonathan G; Porwollik Steffen; Blackmer Felisa; Cheng Pui; McClelland Michael
Host gene expression changes and DNA amplification during temperate phage induction.
Journal of bacteriology 2005;187(4):1485-92.
2005: Xia Xiaoqin; McClelland Michael; Wang Yipeng
WebArray: an online platform for microarray data analysis.
BMC bioinformatics 2005;6():306.
2005: Rondeau Gaëlle; McClelland Michael; Nguyen Toan; Risques Rosana; Wang Yipeng; Judex Martin; Cho Ann H; Welsh John
Enhanced microarray performance using low complexity representations of the transcriptome.
Nucleic acids research 2005;33(11):e100.
2004: Helm R Allen; Porwollik Steffen; Stanley April E; Maloy Stanley; McClelland Michael; Rabsch Wolfgang; Eisenstark Abraham
Pigeon-associated strains of Salmonella enterica serovar Typhimurium phage type DT2 have genomic rearrangements at rRNA operons.
Infection and immunity 2004;72(12):7338-41.
2004: McClelland Michael; Sanderson Kenneth E; Clifton Sandra W; Latreille Phil; Porwollik Steffen; Sabo Aniko; Meyer Rekha; Bieri Tamberlyn; Ozersky Phil; McLellan Michael; Harkins C Richard; Wang Chunyan; Nguyen Christine; Berghoff Amy; Elliott Glendoria; Kohlberg Sara; Strong Cindy; Du Feiyu; Carter Jason; Kremizki Colin; Layman Dan; Leonard Shawn; Sun Hui; Fulton Lucinda; Nash William; Miner Tracie; Minx Patrick; Delehaunty Kim; Fronick Catrina; Magrini Vincent; Nhan Michael; Warren Wesley; Florea Liliana; Spieth John; Wilson Richard K
Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid.
Nature genetics 2004;36(12):1268-74.
2004: Hayakawa Jun; Mittal Shalu; Wang Yipeng; Korkmaz Kemal S; Adamson Eileen; English Christopher; Ohmichi Masahide; McClelland Michael; Mercola Dan
Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress.
Molecular cell 2004;16(4):521-35.
2004: Rojas Ana María; de Los Rios Jose Esteban García; Fischer-Le Saux Marion; Jimenez Pedro; Reche Paloma; Bonneau Sophie; Sutra Laurent; Mathieu-Daudé Françoise; McClelland Michael
Erwinia toletana sp. nov., associated with Pseudomonas savastanoi-induced tree knots.
International journal of systematic and evolutionary microbiology 2004;54(Pt 6):2217-22.
2004: Porwollik S; Boyd E F; Choy C; Cheng P; Florea L; Proctor E; McClelland M
Characterization of Salmonella enterica subspecies I genovars by use of microarrays.
Journal of bacteriology 2004;186(17):5883-98.
2004: Nair Satheesh; Alokam Suneetha; Kothapalli Sushma; Porwollik Steffan; Proctor Emily; Choy Carmen; McClelland Michael; Liu Shu-Lin; Sanderson Kenneth E
Salmonella enterica serovar Typhi strains from which SPI7, a 134-kilobase island with genes for Vi exopolysaccharide and other functions, has been deleted.
Journal of bacteriology 2004;186(10):3214-23.
2004: Cuadros Camilo; Lopez-Hernandez Francisco J; Dominguez Ana Lucia; McClelland Michael; Lustgarten Joseph
Flagellin fusion proteins as adjuvants or vaccines induce specific immune responses.
Infection and immunity 2004;72(5):2810-6.
2004: Andrews-Polymenis Helene L; Rabsch Wolfgang; Porwollik Steffen; McClelland Michael; Rosetti Carlos; Adams L Garry; Bäumler Andreas J
Host restriction of Salmonella enterica serotype Typhimurium pigeon isolates does not correlate with loss of discrete genes.
Journal of bacteriology 2004;186(9):2619-28.
2004: Wang Qingfeng; Frye Jonathan G; McClelland Michael; Harshey Rasika M
Gene expression patterns during swarming in Salmonella typhimurium: genes specific to surface growth and putative new motility and pathogenicity genes.
Molecular microbiology 2004;52(1):169-87.
2004: Porwollik Steffen; Wong Rita Mei-Yee; Helm R Allen; Edwards Kelly K; Calcutt Michael; Eisenstark Abraham; McClelland Michael
DNA amplification and rearrangements in archival Salmonella enterica serovar Typhimurium LT2 cultures.
Journal of bacteriology 2004;186(6):1678-82.
2004: Stuart Robert O; Wachsman William; Berry Charles C; Wang-Rodriguez Jessica; Wasserman Linda; Klacansky Igor; Masys Dan; Arden Karen; Goodison Steven; McClelland Michael; Wang Yipeng; Sawyers Anne; Kalcheva Iveta; Tarin David; Mercola Dan
In silico dissection of cell-type-associated patterns of gene expression in prostate cancer.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(2):615-20.
2003: Rumpler G; Becker B; Hafner C; McClelland M; Stolz W; Landthaler M; Schmitt R; Bosserhoff A; Vogt T
Identification of differentially expressed genes in models of melanoma progression by cDNA array analysis: SPARC, MIF and a novel cathepsin protease characterize aggressive phenotypes.
Experimental dermatology 2003;12(6):761-71.
2003: Alvarez Juan; Porwollik Steffen; Laconcha Idoia; Gisakis Vassilis; Vivanco Ana Belén; Gonzalez Iratxe; Echenagusia Susana; Zabala Nieves; Blackmer Felisa; McClelland Michael; Rementeria Aitor; Garaizar Javier
Detection of a Salmonella enterica serovar California strain spreading in spanish feed mills and genetic characterization with DNA microarrays.
Applied and environmental microbiology 2003;69(12):7531-4.
2003: Adamson Eileen; de Belle Ian; Mittal Shalu; Wang Yipeng; Hayakawa Jun; Korkmaz Kemal; O'Hagan David; McClelland Michael; Mercola Dan
Egr1 signaling in prostate cancer.
Cancer biology & therapy 2003;2(6):617-22.
2003: Bader Martin W; Navarre William Wiley; Shiau Whitney; Nikaido Hiroshi; Frye Jonathan G; McClelland Michael; Fang Ferric C; Miller Samuel I
Regulation of Salmonella typhimurium virulence gene expression by cationic antimicrobial peptides.
Molecular microbiology 2003;50(1):219-30.
2003: Porwollik Steffen; McClelland Michael
Lateral gene transfer in Salmonella.
Microbes and infection / Institut Pasteur 2003;5(11):977-89.
2003: Boyd E F; Porwollik S; Blackmer F; McClelland M
Differences in gene content among Salmonella enterica serovar typhi isolates.
Journal of clinical microbiology 2003;41(8):3823-8.
2003: Florea Liliana; McClelland Michael; Riemer Cathy; Schwartz Scott; Miller Webb
EnteriX 2003: Visualization tools for genome alignments of Enterobacteriaceae.
Nucleic acids research 2003;31(13):3527-32.
2003: Lawhon Sara D; Frye Jonathan G; Suyemoto Mitsu; Porwollik Steffen; McClelland Michael; Altier Craig
Global regulation by CsrA in Salmonella typhimurium.
Molecular microbiology 2003;48(6):1633-45.
2003: Porwollik Steffen; Frye Jonathan; Florea Liliana D; Blackmer Felisa; McClelland Michael
A non-redundant microarray of genes for two related bacteria.
Nucleic acids research 2003;31(7):1869-76.
2003: Ringquist Steven; Rondeau Gaelle; Risques Rosa-Ana; Higashiyama Takuya; Wang Yi-Peng; Porwollik Steffen; Boyle David; McClelland Michael; Welsh John
Microarray analysis using RNA arbitrarily primed PCR.
Methods in molecular biology (Clifton, N.J.) 2003;226():245-54.
2002: Wilson James W; Ott C Mark; Ramamurthy Rajee; Porwollik Steffen; McClelland Michael; Pierson Duane L; Nickerson Cheryl A
Low-Shear modeled microgravity alters the Salmonella enterica serovar typhimurium stress response in an RpoS-independent manner.
Applied and environmental microbiology 2002;68(11):5408-16.
2002: Wilson James W; Ramamurthy Rajee; Porwollik Steffen; McClelland Michael; Hammond Timothy; Allen Pat; Ott C Mark; Pierson Duane L; Nickerson Cheryl A
Microarray analysis identifies Salmonella genes belonging to the low-shear modeled microgravity regulon.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(21):13807-12.
2002: Lechner Sandra; Müller-Ladner Ulf; Schlottmann Klaus; Jung Barbara; McClelland Michael; Rüschoff Josef; Welsh John; Schölmerich Jürgen; Kullmann Frank
Bile acids mimic oxidative stress induced upregulation of thioredoxin reductase in colon cancer cell lines.
Carcinogenesis 2002;23(8):1281-8.
2002: Porwollik Steffen; Wong Rita Mei-Yi; McClelland Michael
Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis.
Proceedings of the National Academy of Sciences of the United States of America 2002;99(13):8956-61.
2002: Garaizar Javier; Porwollik Steffen; Echeita Aurora; Rementeria Aitor; Herrera Silvia; Wong Rita Mei-Yi; Frye Jonathan; Usera Miguel A; McClelland Michael
DNA microarray-based typing of an atypical monophasic Salmonella enterica serovar.
Journal of clinical microbiology 2002;40(6):2074-8.
2001: Vogt T; McClelland M; Jung B; Popova S; Bogenrieder T; Becker B; Rumpler G; Landthaler M; Stolz W
Progression and NSAID-induced apoptosis in malignant melanomas are independent of cyclooxygenase II.
Melanoma research 2001;11(6):587-99.
2001: Porwollik S; Wong R M; Sims S H; Schaaper R M; DeMarini D M; McClelland M
The DeltauvrB mutations in the Ames strains of Salmonella span 15 to 119 genes.
Mutation research 2001;483(1-2):1-11.
2001: McClelland M; Sanderson K E; Spieth J; Clifton S W; Latreille P; Courtney L; Porwollik S; Ali J; Dante M; Du F; Hou S; Layman D; Leonard S; Nguyen C; Scott K; Holmes A; Grewal N; Mulvaney E; Ryan E; Sun H; Florea L; Miller W; Stoneking T; Nhan M; Waterston R; Wilson R K
Complete genome sequence of Salmonella enterica serovar Typhimurium LT2.
Nature 2001;413(6858):852-6.
2000: McClelland M; Florea L; Sanderson K; Clifton S W; Parkhill J; Churcher C; Dougan G; Wilson R K; Miller W
Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi.
Nucleic acids research 2000;28(24):4974-86.
2000: Zeng L; Sachdev P; Yan L; Chan J L; Trenkle T; McClelland M; Welsh J; Wang L H
Vav3 mediates receptor protein tyrosine kinase signaling, regulates GTPase activity, modulates cell morphology, and induces cell transformation.
Molecular and cellular biology 2000;20(24):9212-24.
2000: Glinsky G V; Ivanova A B; Welsh J; McClelland M
The role of blood group antigens in malignant progression, apoptosis resistance, and metastatic behavior.
Transfusion medicine reviews 2000;14(4):326-50.
2000: Florea L; Riemer C; Schwartz S; Zhang Z; Stojanovic N; Miller W; McClelland M
Web-based visualization tools for bacterial genome alignments.
Nucleic acids research 2000;28(18):3486-96.
2000: Benson N R; Wong R M; McClelland M
Analysis of the SOS response in Salmonella enterica serovar typhimurium using RNA fingerprinting by arbitrarily primed PCR.
Journal of bacteriology 2000;182(12):3490-7.
2000: Trenkle T; McClelland M; Adlkofer K; Welsh J
Major transcript variants of VAV3, a new member of the VAV family of guanine nucleotide exchange factors.
Gene 2000;245(1):139-49.
1999: Vogt T; Kroiss M; McClelland M; Gruss C; Becker B; Bosserhoff A K; Rumpler G; Bogenrieder T; Landthaler M; Stolz W
Deficiency of a novel retinoblastoma binding protein 2-homolog is a consistent feature of sporadic human melanoma skin cancer.
Laboratory investigation; a journal of technical methods and pathology 1999;79(12):1615-27.
1999: Trenkle T; Welsh J; McClelland M
Differential display probes for cDNA arrays.
BioTechniques 1999;27(3):554-60, 562, 564.
1999: Müller-Ladner U; Judex M; Jüsten H P; Wessinghage D; Welsh J; McClelland M; Gay S; Schölmerich J; Kullmann F
[Analysis of gene expression patterns in rheumatoid synovial fibroblasts using RAP-PCR for differential display]
Medizinische Klinik (Munich, Germany : 1983) 1999;94(4):228-32.
1999: Wong R M; Wong K K; Benson N R; McClelland M
Sample sequencing of a Salmonella typhimurium LT2 lambda library: comparison to the Escherichia coli K12 genome.
FEMS microbiology letters 1999;173(2):411-23.
1999: Kullmann F; Judex M; Ballhorn W; Jüsten H P; Wessinghage D; Welsh J; Yen T J; Lang B; Hittle J C; McClelland M; Gay S; Schölmerich J; Müller-Ladner U
Kinesin-like protein CENP-E is upregulated in rheumatoid synovial fibroblasts.
Arthritis research 1999;1(1):71-80.
1999: Trenkle T; Mathieu-Daudé F; Welsh J; McClelland M
Reduced complexity probes for DNA arrays.
Methods in enzymology 1999;303():380-92.
1999: Mathieu-Daudé F; Trenkle T; Welsh J; Jung B; Vogt T; McClelland M
Identification of differentially expressed genes using RNA fingerprinting by arbitrarily primed polymerase chain reaction.
Methods in enzymology 1999;303():309-24.
1998: Jung B; Vogt T; Mathieu-Daudé F; Welsh J; McClelland M; Trenkle T; Weitzel C; Kullmann F
Estrogen-responsive RING finger mRNA induction in gastrointestinal carcinoma cells following bile acid treatment.
Carcinogenesis 1998;19(11):1901-6.
1998: McClelland M; Wilson R K
Comparison of sample sequences of the Salmonella typhi genome to the sequence of the complete Escherichia coli K-12 genome.
Infection and immunity 1998;66(9):4305-12.
1998: Trenkle T; Welsh J; Jung B; Mathieu-Daude F; McClelland M
Non-stoichiometric reduced complexity probes for cDNA arrays.
Nucleic acids research 1998;26(17):3883-91.
1998: Schweitzer B; Taylor V; Welcher A A; McClelland M; Suter U
Neural membrane protein 35 (NMP35): a novel member of a gene family which is highly expressed in the adult nervous system.
Molecular and cellular neurosciences 1998;11(5-6):260-73.
1998: Pesole G; Liuni S; Grillo G; Belichard P; Trenkle T; Welsh J; McClelland M
GeneUp: a program to select short PCR primer pairs that occur in multiple members of sequence lists.
BioTechniques 1998;25(1):112-7, 120-3.
1998: Wong K K; McClelland M; Stillwell L C; Sisk E C; Thurston S J; Saffer J D
Identification and sequence analysis of a 27-kilobase chromosomal fragment containing a Salmonella pathogenicity island located at 92 minutes on the chromosome map of Salmonella enterica serovar typhimurium LT2.
Infection and immunity 1998;66(7):3365-71.
1998: Mathieu-Daudé F; Welsh J; Davis C; McClelland M
Differentially expressed genes in the Trypanosoma brucei life cycle identified by RNA fingerprinting.
Molecular and biochemical parasitology 1998;92(1):15-28.
1998: Vogt T; Stolz W; Welsh J; Jung B; Kerbel R S; Kobayashi H; Landthaler M; McClelland M
Overexpression of Lerk-5/Eplg5 messenger RNA: a novel marker for increased tumorigenicity and metastatic potential in human malignant melanomas.
Clinical cancer research : an official journal of the American Association for Cancer Research 1998;4(3):791-7.
1997: Vogt T M; Welsh J; Stolz W; Kullmann F; Jung B; Landthaler M; McClelland M
RNA fingerprinting displays UVB-specific disruption of transcriptional control in human melanocytes.
Cancer research 1997;57(16):3554-61.
1997: Honeycutt R; Sobral B W; McClelland M
Polymerase chain reaction (PCR) detection and quantification using a short PCR product and a synthetic internal positive control.
Analytical biochemistry 1997;248(2):303-6.
1997: McClelland M; Honeycutt R; Mathieu-Daude F; Vogt T; Welsh J
Fingerprinting by arbitrarily primed PCR.
Methods in molecular biology (Clifton, N.J.) 1997;85():13-24.
1996: Mathieu-Daudé F; Welsh J; Vogt T; McClelland M
DNA rehybridization during PCR: the 'Cot effect' and its consequences.
Nucleic acids research 1996;24(11):2080-6.
1996: Mathieu-Daudé F; Cheng R; Welsh J; McClelland M
Screening of differentially amplified cDNA products from RNA arbitrarily primed PCR fingerprints using single strand conformation polymorphism (SSCP) gels.
Nucleic acids research 1996;24(8):1504-7.
1995: Honeycutt R J; Sobral B W; McClelland M
tRNA intergenic spacers reveal polymorphisms diagnostic for Xanthomonas albilineans.
Microbiology (Reading, England) 1995;141 ( Pt 12)():3229-39.
1995: Borowsky R L; McClelland M; Cheng R; Welsh J
Arbitrarily primed DNA fingerprinting for phylogenetic reconstruction in vertebrates: the Xiphophorus model.
Molecular biology and evolution 1995;12(6):1022-32.
1995: Kullmann F; McClelland M
Gastric carcinoma.
The New England journal of medicine 1995;333(21):1427-8.
1995: Welsh J; Rampino N; McClelland M; Perucho M
Nucleic acid fingerprinting by PCR-based methods: applications to problems in aging and mutagenesis.
Mutation research 1995;338(1-6):215-29.
1995: Fukunaga M; Takahashi Y; Tsuruta Y; Matsushita O; Ralph D; McClelland M; Nakao M
Genetic and phenotypic analysis of Borrelia miyamotoi sp. nov., isolated from the ixodid tick Ixodes persulcatus, the vector for Lyme disease in Japan.
International journal of systematic bacteriology 1995;45(4):804-10.
1995: Mathieu-Daudé F; Stevens J; Welsh J; Tibayrenc M; McClelland M
Genetic diversity and population structure of Trypanosoma brucei: clonality versus sexuality.
Molecular and biochemical parasitology 1995;72(1-2):89-101.
1995: McClelland M; Mathieu-Daude F; Welsh J
RNA fingerprinting and differential display using arbitrarily primed PCR.
Trends in genetics : TIG 1995;11(6):242-6.
1995: Tigano-Milani M S; Honeycutt R J; Lacey L A; Assis R; McClelland M; Sobral B W
Genetic variability of Paecilomyces fumosoroseus isolates revealed by molecular markers.
Journal of invertebrate pathology 1995;65(3):274-82.
1995: Perucho M; Welsh J; Peinado M A; Ionov Y; McClelland M
Fingerprinting of DNA and RNA by arbitrarily primed polymerase chain reaction: applications in cancer research.
Methods in enzymology 1995;254():275-90.
1994: Ralph D; McClelland M
Phylogenetic evidence for horizontal transfer of an intervening sequence between species in a spirochete genus.
Journal of bacteriology 1994;176(19):5982-7.
1994: McClelland M; Ralph D; Cheng R; Welsh J
Interactions among regulators of RNA abundance characterized using RNA fingerprinting by arbitrarily primed PCR.
Nucleic acids research 1994;22(21):4419-31.
1994: Wong K K; Wong R M; Rudd K E; McClelland M
High-resolution restriction map for a 240-kilobase region spanning 91 to 96 minutes on the Salmonella typhimurium LT2 chromosome.
Journal of bacteriology 1994;176(18):5729-34.
1994: McClelland M; Nelson M; Raschke E
Effect of site-specific modification on restriction endonucleases and DNA modification methyltransferases.
Nucleic acids research 1994;22(17):3640-59.
1994: McClelland M; Welsh J
RNA fingerprinting by arbitrarily primed PCR.
PCR methods and applications 1994;4(1):S66-81.
1994: McClelland M; Welsh J
DNA fingerprinting by arbitrarily primed PCR.
PCR methods and applications 1994;4(1):S59-65.
1994: McClelland M; Arensdorf H; Cheng R; Welsh J
Arbitrarily primed PCR fingerprints resolved on SSCP gels.
Nucleic acids research 1994;22(9):1770-1.
1994: Wong K K; McClelland M
Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA.
Proceedings of the National Academy of Sciences of the United States of America 1994;91(2):639-43.
1994: Dalal S S; Welsh J; Tkachenko A; Ralph D; DiCicco-Bloom E; Bordás L; McClelland M; Chada K
Rapid isolation of tissue-specific and developmentally regulated brain cDNAs using RNA arbitrarily primed PCR (RAP-PCR).
Journal of molecular neuroscience : MN 1994;5(2):93-104.
1993: Ralph D; McClelland M; Welsh J
RNA fingerprinting using arbitrarily primed PCR identifies differentially regulated RNAs in mink lung (Mv1Lu) cells growth arrested by transforming growth factor beta 1.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(22):10710-4.
1993: Honeycutt R J; McClelland M; Sobral B W
Physical map of the genome of Rhizobium meliloti 1021.
Journal of bacteriology 1993;175(21):6945-52.
1993: Fang F C; McClelland M; Guiney D G; Jackson M M; Hartstein A I; Morthland V H; Davis C E; McPherson D C; Welsh J
Value of molecular epidemiologic analysis in a nosocomial methicillin-resistant Staphylococcus aureus outbreak.
JAMA : the journal of the American Medical Association 1993;270(11):1323-8.
1993: al-Janabi S M; Honeycutt R J; McClelland M; Sobral B W
A genetic linkage map of Saccharum spontaneum L. 'SES 208'.
Genetics 1993;134(4):1249-60.
1993: Ralph D; Postic D; Baranton G; Pretzman C; McClelland M
Species of Borrelia distinguished by restriction site polymorphisms in 16S rRNA genes.
FEMS microbiology letters 1993;111(2-3):239-43.
1993: Nelson M; Raschke E; McClelland M
Effect of site-specific methylation on restriction endonucleases and DNA modification methyltransferases.
Nucleic acids research 1993;21(13):3139-54.
1993: Ralph D; McClelland M
Intervening sequence with conserved open reading frame in eubacterial 23S rRNA genes.
Proceedings of the National Academy of Sciences of the United States of America 1993;90(14):6864-8.
1993: Ralph D; Que Q; Van Etten J L; McClelland M
Leptospira genomes are modified at 5'-GTAC.
Journal of bacteriology 1993;175(12):3913-5.
1993: Ralph D; McClelland M; Welsh J; Baranton G; Perolat P
Leptospira species categorized by arbitrarily primed polymerase chain reaction (PCR) and by mapped restriction polymorphisms in PCR-amplified rRNA genes.
Journal of bacteriology 1993;175(4):973-81.
1993: McClelland M; Chada K; Welsh J; Ralph D
Arbitrary primed PCR fingerprinting of RNA applied to mapping differentially expressed genes.
EXS 1993;67():103-15.
1992: Welsh J; Chada K; Dalal S S; Cheng R; Ralph D; McClelland M
Arbitrarily primed PCR fingerprinting of RNA.
Nucleic acids research 1992;20(19):4965-70.
1992: Welsh J; Pretzman C; Postic D; Saint Girons I; Baranton G; McClelland M
Genomic fingerprinting by arbitrarily primed polymerase chain reaction resolves Borrelia burgdorferi into three distinct phyletic groups.
International journal of systematic bacteriology 1992;42(3):370-7.
1992: Poddar S K; McClelland M
Nonspecific primer and PCR generated hybridization probes for physical ordering large restriction fragments in complex genome of S. aureus.
Biochemical and biophysical research communications 1992;185(3):1055-61.
1992: Welsh J; McClelland M
PCR-amplified length polymorphisms in tRNA intergenic spacers for categorizing staphylococci.
Molecular microbiology 1992;6(12):1673-80.
1992: McClelland M; Petersen C; Welsh J
Length polymorphisms in tRNA intergenic spacers detected by using the polymerase chain reaction can distinguish streptococcal strains and species.
Journal of clinical microbiology 1992;30(6):1499-504.
1992: Wong K K; McClelland M
Dissection of the Salmonella typhimurium genome by use of a Tn5 derivative carrying rare restriction sites.
Journal of bacteriology 1992;174(11):3807-11.
1992: McClelland M; Nelson M
Effect of site-specific methylation on DNA modification methyltransferases and restriction endonucleases.
Nucleic acids research 1992;20 Suppl():2145-57.
1992: Bhagwat A S; McClelland M
DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coli genome.
Nucleic acids research 1992;20(7):1663-8.
1992: Wong K K; McClelland M
A BlnI restriction map of the Salmonella typhimurium LT2 genome.
Journal of bacteriology 1992;174(5):1656-61.
1992: McClelland M; Bhagwat A S
Biased DNA repair.
Nature 1992;355(6361):595-6.
1991: Poddar S K; McClelland M
Restriction fragment fingerprint and genome sizes of Staphylococcus species using pulsed-field gel electrophoresis and infrequent cleaving enzymes.
DNA and cell biology 1991;10(9):663-9.
1991: Welsh J; McClelland M
Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers.
Nucleic acids research 1991;19(19):5275-9.
1991: Sobral B W; Honeycutt R J; Atherly A G; McClelland M
Electrophoretic separation of the three Rhizobium meliloti replicons.
Journal of bacteriology 1991;173(16):5173-80.
1991: Nelson M; McClelland M
Site-specific methylation: effect on DNA modification methyltransferases and restriction endonucleases.
Nucleic acids research 1991;19 Suppl():2045-71.
1991: Wong K K; McClelland M
PCR with 5-methyl-dCTP replacing dCTP.
Nucleic acids research 1991;19(5):1081-5.
1991: Welsh J; McClelland M
Genomic fingerprints produced by PCR with consensus tRNA gene primers.
Nucleic acids research 1991;19(4):861-6.
1991: Hanish J; McClelland M
Enzymatic cleavage of a bacterial chromosome at a transposon-inserted rare site.
Nucleic acids research 1991;19(4):829-32.
1991: Welsh J; Petersen C; McClelland M
Polymorphisms generated by arbitrarily primed PCR in the mouse: application to strain identification and genetic mapping.
Nucleic acids research 1991;19(2):303-6.
1990: Welsh J; McClelland M
Fingerprinting genomes using PCR with arbitrary primers.
Nucleic acids research 1990;18(24):7213-8.
1990: Patel Y; Van Cott E; Wilson G G; McClelland M
Cleavage at the twelve-base-pair sequence 5'-TCTAGATCTAGA-3' using M.Xbal (TCTAGm6A) methylation and DpnI (Gm6A/TC) cleavage.
Nucleic acids research 1990;18(6):1603-7.

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