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Alan Friedman

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TOP 3
Lu He; Alan Friedman; Chris Bailey-Kellogg
A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.
Wei Zheng; Alan Friedman; Chris Bailey-Kellogg
Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins.
Tim E Williamson; Bruce A Craig; Elena Kondrashkina; Chris Bailey-Kellogg; Alan Friedman
Analysis of self-associating proteins by singular value decomposition of solution scattering data.

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All Publications

2012: Lu He; Alan Friedman; Chris Bailey-Kellogg
A divide-and-conquer approach to determine the Pareto frontier for optimization of protein engineering experiments.
Proteins 2012;80(3):790-806.
2009: Wei Zheng; Alan Friedman; Chris Bailey-Kellogg
Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins.
Journal of computational biology : a journal of computational molecular cell biology 2009;16(8):1151-68.
2008: Tim E Williamson; Bruce A Craig; Elena Kondrashkina; Chris Bailey-Kellogg; Alan Friedman
Analysis of self-associating proteins by singular value decomposition of solution scattering data.
Biophysical journal 2008;94(12):4906-23.
2008: Xiaoduan Ye; Alan Friedman; Chris Bailey-Kellogg
Optimizing Bayes error for protein structure model selection by stability mutagenesis.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2008;7():99-108.
2008: Larisa V Avramova; Jairav Desai; Shelley Weaver; Alan Friedman; Chris Bailey-Kellogg
Robotic hierarchical mixing for the production of combinatorial libraries of proteins and small molecules.
Journal of combinatorial chemistry 2008;10(1):63-8.
2007: Xiaoduan Ye; Alan Friedman; Chris Bailey-Kellogg
Hypergraph model of multi-residue interactions in proteins: sequentially-constrained partitioning algorithms for optimization of site-directed protein recombination.
Journal of computational biology : a journal of computational molecular cell biology 2007;14(6):777-90.
2007: Wei Zheng; Xiaoduan Ye; Alan Friedman; Chris Bailey-Kellogg
Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombination.
Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference 2007;6():31-40.
2006: Liz Saftalov; Peter A Smith; Alan Friedman; Chris Bailey-Kellogg
Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragments.
Proteins 2006;64(3):629-42.
2005: David A Schultz; Alan Friedman; Mark A White; Robert Fox
The crystal structure of the cis-proline to glycine variant (P114G) of ribonuclease A.
Protein science : a publication of the Protein Society 2005;14(11):2862-70.
2004: Xiaoduan Ye; Patrick K O'Neil; Adrienne N Foster; Michal J Gajda; Jan Kosinski; Michal A Kurowski; Janusz Bujnicki; Alan Friedman; Chris Bailey-Kellogg
Probabilistic cross-link analysis and experiment planning for high-throughput elucidation of protein structure.
Protein science : a publication of the Protein Society 2004;13(12):3298-313.
2004: Hanna Pincas; Maneesh R Pingle; Jianmin Huang; kaiqin lao; Philip B Paty; Alan Friedman; Francis Barany
High sensitivity EndoV mutation scanning through real-time ligase proofreading.
Nucleic acids research 2004;32(19):e148.
2004: Shobha Potluri; A A Khan; A Kuzminykh; Janusz Bujnicki; Alan Friedman; Chris Bailey-Kellogg
Geometric analysis of cross-linkability for protein fold discrimination.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2004;():447-58.
2003: Eric J Bennett; Jens Bjerregaard; James E Knapp; David A Chavous; Alan Friedman; William E Royer; Clare M O'Connor
Catalytic implications from the Drosophila protein L-isoaspartyl methyltransferase structure and site-directed mutagenesis.
Biochemistry 2003;42(44):12844-53.
2003: Zhenyu Zhu; Jing Zhou; Alan Friedman; Shuang-Yong Xu
Isolation of BsoBI restriction endonuclease variants with altered substrate specificity.
Journal of molecular biology 2003;330(2):359-72.
2002: Craig D Smith; Mike Carson; Alan Friedman; Matthew M Skinner; Lawrence J Delucas; Laurent Chantalat; Lance Weise; Takuji Shirasawa; Debasish Chattopadhyay
Crystal structure of human L-isoaspartyl-O-methyl-transferase with S-adenosyl homocysteine at 1.6-A resolution and modeling of an isoaspartyl-containing peptide at the active site.
Protein science : a publication of the Protein Society 2002;11(3):625-35.
2001: M J van der Woerd; J J Pelletier; S Xu; Alan Friedman
Restriction enzyme BsoBI-DNA complex: a tunnel for recognition of degenerate DNA sequences and potential histidine catalysis.
Structure (London, England : 1993) 2001;9(2):133-44.
2000: M M Skinner; J M Puvathingal; R L Walter; Alan Friedman
Crystal structure of protein isoaspartyl methyltransferase: a catalyst for protein repair.
Structure (London, England : 1993) 2000;8(11):1189-201.
1996: R L Walter; Steven E Ealick; Alan Friedman; R C Blake; P Proctor; Menachem Shoham
Multiple wavelength anomalous diffraction (MAD) crystal structure of rusticyanin: a highly oxidizing cupredoxin with extreme acid stability.
Journal of molecular biology 1996;263(5):730-51.
1995: Yousif Shamoo; Alan Friedman; M R Parsons; William Konigsberg; Thomas A Steitz
Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA.
Nature 1995;376(6538):362-6.
1995: Alan Friedman; T O Fischmann; Thomas A Steitz
Crystal structure of lac repressor core tetramer and its implications for DNA looping.
Science (New York, N.Y.) 1995;268(5218):1721-7.
1994: Vipin Paliwal; Alan Friedman; Wlodzimierz Ptak; Philip W Askenase
Monoclonal, antigen-specific, T cell contrasuppressor factor expresses determinants of TCR alpha-chain (not necessarily TCR beta-chain), having a molecular mass of about 40 kDa.
Journal of immunology (Baltimore, Md. : 1950) 1994;152(6):2811-20.
1994: Wlodzimierz Ptak; Alan Friedman; Patrick M Flood
Generation of anti-hapten T cell cytotoxicity in vivo. Relationship to contact sensitivity and the role of contrasuppression.
Archivum immunologiae et therapiae experimentalis 1994;42(3):185-92.
1990: Alan Friedman; Wlodzimierz Ptak; E Brewer; Douglas R Green; P A Reuter; Patrick M Flood
Generation of a T-cell hybridoma producing a contrasuppressor factor for contact sensitivity.
Immunology 1990;71(2):282-9.
1989: Alan Friedman; Wlodzimierz Ptak; J Freedman; Douglas R Green; Patrick M Flood
Prevention of tumor growth and enhancement of cell-mediated immunity by an antigen-specific contrasuppressor factor from a T cell hybridoma.
Progress in clinical and biological research 1989;288():281-8.
1982: Alan Friedman; S R Long; S E Brown; W J Buikema; Frederick M Ausubel
Construction of a broad host range cosmid cloning vector and its use in the genetic analysis of Rhizobium mutants.
Gene 1982;18(3):289-96.