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Daniel Kolarich

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Chemicals & Drugs

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Glycosylation

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TOP 3
Arun V Everest-Dass; Daniel Kolarich; Nicolle H Packer; Jodie L Abrahams; Matthew P Campbell
Structural Feature Ions for Distinguishing N- and O-Linked Glycan Isomers by LC-ESI-IT MS/MS.
Arun V Everest-Dass; Daniel Kolarich; Matthew P Campbell; Nicolle H Packer
Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.
Daniel Kolarich; Ryan McBride; René Ranzinger; Erdmann Rapp; Weston B Struwe; Sanjay Agravat; Matthew P Campbell; Stuart M Haslam; Masaki Kato; Carsten Kettner; Joseph Zaia; William S York
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.

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All Publications

2013: Arun V Everest-Dass; Daniel Kolarich; Nicolle H Packer; Jodie L Abrahams; Matthew P Campbell
Structural Feature Ions for Distinguishing N- and O-Linked Glycan Isomers by LC-ESI-IT MS/MS.
Journal of the American Society for Mass Spectrometry 2013;24(6):895-906.
2013: Arun V Everest-Dass; Daniel Kolarich; Matthew P Campbell; Nicolle H Packer
Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.
Rapid communications in mass spectrometry : RCM 2013;27(9):931-9.
2013: Daniel Kolarich; Ryan McBride; René Ranzinger; Erdmann Rapp; Weston B Struwe; Sanjay Agravat; Matthew P Campbell; Stuart M Haslam; Masaki Kato; Carsten Kettner; Joseph Zaia; William S York
The minimum information required for a glycomics experiment (MIRAGE) project: improving the standards for reporting mass-spectrometry-based glycoanalytic data.
Molecular & cellular proteomics : MCP 2013;12(4):991-5.
2013: Stephan Klatt; Daniel Kolarich; Zoltán Konthur; Michael Rohe; Kathirvel Alagesan; Daniela Hartl
Production of glycosylated soluble amyloid precursor protein alpha (sAPPalpha) in Leishmania tarentolae.
Journal of proteome research 2013;12(1):396-403.
2012: C F Williams; D Williams; David Lloyd; K Alagesan; Joanne Cable; Michael Duchêne; Daniel Kolarich; David Leitsch
Disrupted intracellular redox balance of the diplomonad fish parasite Spironucleus vortens by 5-nitroimidazoles and garlic-derived compounds.
Veterinary parasitology 2012;190(1-2):62-73.
2012: Arun V Everest-Dass; Dayong Jin; Daniel Kolarich; Helena Nevalainen; Morten Thaysen-Andersen; Nicolle H Packer
Comparative structural analysis of the glycosylation of salivary and buccal cell proteins: innate protection against infection by Candida albicans.
Glycobiology 2012;22(11):1465-79.
2012: Pia H Jensen; Niclas G Karlsson; Daniel Kolarich; Nicolle H Packer
Structural analysis of N- and O-glycans released from glycoproteins.
Nature protocols 2012;7(7):1299-310.
2012: Daniel Kolarich; Friedrich Altmann; Pia H Jensen; Nicolle H Packer
Determination of site-specific glycan heterogeneity on glycoproteins.
Nature protocols 2012;7(7):1285-98.
2012: David Leitsch; Daniel Kolarich; Mirjana Drinić; Michael Duchêne
Down-regulation of flavin reductase and alcohol dehydrogenase-1 (ADH1) in metronidazole-resistant isolates of Trichomonas vaginalis.
Molecular and biochemical parasitology 2012;183(2):177-83.
2012: Xu He; Daniel Kolarich; Nicolle H Packer; Mark von Itzstein; Thomas Haselhorst; Allison R Kermode
Influence of an ER-retention signal on the N-glycosylation of recombinant human α-L-iduronidase generated in seeds of Arabidopsis.
Plant molecular biology 2012;79(1-2):157-69.
2012: Daniel Kolarich; Bernd Lepenies; Peter H Seeberger
Glycomics, glycoproteomics and the immune system.
Current opinion in chemical biology 2012;16(1-2):214-20.
2012: Xu He; Liwen Jiang; Lorne A Clarke; Jason D Galpin; Gregory A Grabowski; Thomas Haselhorst; Daniel Kolarich; Don Mahuran; Yansong Miao; Nicolle H Packer; Michael B Tropak; Mark von Itzstein; Allison R Kermode
Production of active human glucocerebrosidase in seeds of Arabidopsis thaliana complex-glycan-deficient (cgl) plants.
Glycobiology 2012;22(4):492-503.
2012: Xu He; Lorne A Clarke; Tracey M Gloster; Thomas Haselhorst; Daniel Kolarich; Nicolle H Packer; Yi Qian; David J Vocadlo; Mark von Itzstein; Allison R Kermode
Production of α-L-iduronidase in maize for the potential treatment of a human lysosomal storage disease.
Nature communications 2012;3():1062.
2011: Matthew P Campbell; David J Harvey; Catherine A Hayes; Niclas G Karlsson; Daniel Kolarich; Frederique Lisacek; Pauline M Rudd; Weston B Struwe; Marc R Wilkins; Kiyoko F Aoki-Kinoshita; Nicolle H Packer
UniCarbKB: putting the pieces together for glycomics research.
Proteomics 2011;11(21):4117-21.
2011: Albert Lee; Nicolle H Packer; Graham R Robertson; Maria Tsoli; Joel M Chick; Stephen J Clarke; Paul A Haynes; Lucy Jankova; Daniel Kolarich; Mark S Baker
Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor.
Molecular & cellular proteomics : MCP 2011;10(9):M900538MCP200.
2011: Zeynep Sumer-Bayraktar; Sinan Ali; Matthew P Campbell; Daniel Kolarich; Nicolle H Packer; Morten Thaysen-Andersen
N-glycans modulate the function of human corticosteroid-binding globulin.
Molecular & cellular proteomics : MCP 2011;10(8):M111.009100.
2011: Benjamin L Parker; Nichollas E Scott; Melanie Y White; Alistair V G Edwards; Kasper Engholm-Keller; Brett D Hambly; Daniel Kolarich; Martin R Larsen; Albert Lee; Nicolle H Packer; Giuseppe Palmisano; Stuart J Cordwell
Quantitative N-linked glycoproteomics of myocardial ischemia and reperfusion injury reveals early remodeling in the extracellular environment.
Molecular & cellular proteomics : MCP 2011;10(8):M110.006833.
2011: A Weber; H Butterweck; U Mais-Paul; W Teschner; L Lei; E-M Muchitsch; Daniel Kolarich; F Altmann; H J Ehrlich; H P Schwarz
Biochemical, molecular and preclinical characterization of a double-virus-reduced human butyrylcholinesterase preparation designed for clinical use.
Vox sanguinis 2011;100(3):285-97.
2011: Josephine Grass; Martin Pabst; Daniel Kolarich; Gerald Pöltl; Renaud Léonard; Lothar Brecker; Friedrich Altmann
Discovery and structural characterization of fucosylated oligomannosidic N-glycans in mushrooms.
The Journal of biological chemistry 2011;286(8):5977-84.
2011: Nichollas E Scott; Benjamin L Parker; Angela M Connolly; Jana Paulech; Alistair V G Edwards; Ben Crossett; Linda Falconer; Daniel Kolarich; Steven P Djordjevic; Peter Højrup; Nicolle H Packer; Martin R Larsen; Stuart J Cordwell
Simultaneous glycan-peptide characterization using hydrophilic interaction chromatography and parallel fragmentation by CID, higher energy collisional dissociation, and electron transfer dissociation MS applied to the N-linked glycoproteome of Campylobacter jejuni.
Molecular & cellular proteomics : MCP 2011;10(2):M000031-MCP201.
2010: Albert Lee; Miyako Nakano; Marina Hincapie; Daniel Kolarich; Mark S Baker; William S Hancock; Nicolle H Packer
The lectin riddle: glycoproteins fractionated from complex mixtures have similar glycomic profiles.
Omics : a journal of integrative biology 2010;14(4):487-99.
2010: Maja N Christiansen; Daniel Kolarich; Helena Nevalainen; Nicolle H Packer; Pia Hønnerup Jensen
Challenges of determining O-glycopeptide heterogeneity: a fungal glucanase model system.
Analytical chemistry 2010;82(9):3500-9.
2010: David Leitsch; Daniel Kolarich; Michael Duchêne
The flavin inhibitor diphenyleneiodonium renders Trichomonas vaginalis resistant to metronidazole, inhibits thioredoxin reductase and flavin reductase, and shuts off hydrogenosomal enzymatic pathways.
Molecular and biochemical parasitology 2010;171(1):17-24.
2010: Yoshinao Wada; Anne Dell; Stuart M Haslam; Bérangère Tissot; Kevin Canis; Parastoo Azadi; Malin Bäckström; Catherine E Costello; Gunnar C Hansson; Yoshiyuki Hiki; Mayumi Ishihara; Hiromi Ito; Kazuaki Kakehi; Niclas Karlsson; Catherine E Hayes; Koichi Kato; Nana Kawasaki; Kay-Hooi Khoo; Kunihiko Kobayashi; Daniel Kolarich; Akihiro Kondo; Carlito B Lebrilla; Miyako Nakano; Hisashi Narimatsu; Jan Novak; Milos V Novotny; Erina Ohno; Nicolle H Packer; Elizabeth Palaima; Matthew B Renfrow; Michiko Tajiri; Kristina A Thomsson; Hirokazu Yagi; Shin-Yi Yu; Naoyuki Taniguchi
Comparison of methods for profiling O-glycosylation: Human Proteome Organisation Human Disease Glycomics/Proteome Initiative multi-institutional study of IgA1.
Molecular & cellular proteomics : MCP 2010;9(4):719-27.
2010: Nandan Deshpande; Pia H Jensen; Nicolle H Packer; Daniel Kolarich
GlycoSpectrumScan: fishing glycopeptides from MS spectra of protease digests of human colostrum sIgA.
Journal of proteome research 2010;9(2):1063-75.
2010: Pia H Jensen; Daniel Kolarich; Nicolle H Packer
Mucin-type O-glycosylation--putting the pieces together.
The FEBS journal 2010;277(1):81-94.
2009: David Leitsch; Daniel Kolarich; Marina Binder; Johannes Stadlmann; Friedrich Altmann; Michael Duchêne
Trichomonas vaginalis: metronidazole and other nitroimidazole drugs are reduced by the flavin enzyme thioredoxin reductase and disrupt the cellular redox system. Implications for nitroimidazole toxicity and resistance.
Molecular microbiology 2009;72(2):518-36.
2009: Albert Lee; Daniel Kolarich; Paul A Haynes; Pia H Jensen; Mark Baker; Nicolle H Packer
Rat liver membrane glycoproteome: enrichment by phase partitioning and glycoprotein capture.
Journal of proteome research 2009;8(2):770-81.
2009: Martin Pabst; Daniel Kolarich; Gerald Pöltl; Thomas Dalik; Gert Lubec; Andreas Hofinger; Friedrich Altmann
Comparison of fluorescent labels for oligosaccharides and introduction of a new postlabeling purification method.
Analytical biochemistry 2009;384(2):263-73.
2008: Gorji Marzban; Anita Herndl; Daniel Kolarich; Fatemeh Maghuly; Agata Mansfeld; Wolfgang Hemmer; Hermann Katinger; Margit Laimer
Identification of four IgE-reactive proteins in raspberry (Rubus ideaeus L.).
Molecular nutrition & food research 2008;52(12):1497-506.
2008: Johannes Stadlmann; Martin Pabst; Daniel Kolarich; Renate Kunert; Friedrich Altmann
Analysis of immunoglobulin glycosylation by LC-ESI-MS of glycopeptides and oligosaccharides.
Proteomics 2008;8(14):2858-71.
2008: Daniel Kolarich; Alfred Weber; Martin Pabst; Johannes Stadlmann; Wolfgang Teschner; Hartmut Ehrlich; Hans-Peter Schwarz; Friedrich Altmann
Glycoproteomic characterization of butyrylcholinesterase from human plasma.
Proteomics 2008;8(2):254-63.
2007: David Leitsch; Daniel Kolarich; Iain Wilson; Friedrich Altmann; Michael Duchêne
Nitroimidazole action in Entamoeba histolytica: a central role for thioredoxin reductase.
PLoS biology 2007;5(8):e211.
2007: Daniel Kolarich; Andreas Loos; Renaud Léonard; Lukas Mach; Gorji Marzban; Wolfgang Hemmer; Friedrich Altmann
A proteomic study of the major allergens from yellow jacket venoms.
Proteomics 2007;7(10):1615-23.
2007: Anita Herndl; Gorji Marzban; Daniel Kolarich; Rainer Hahn; Donato Boscia; Wolfgang Hemmer; Fatemeh Maghuly; Elitza Stoyanova; Hermann Katinger; Margit Laimer
Mapping of Malus domestica allergens by 2-D electrophoresis and IgE-reactivity.
Electrophoresis 2007;28(3):437-48.
2006: Daniel Kolarich; Peter L Turecek; Alfred Weber; Artur Mitterer; Michael Graninger; Peter Matthiessen; Gerry A F Nicolaes; Friedrich Altmann; Hans Peter Schwarz
Biochemical, molecular characterization, and glycoproteomic analyses of alpha(1)-proteinase inhibitor products used for replacement therapy.
Transfusion 2006;46(11):1959-77.
2006: Andrea Brunner; Daniel Kolarich; Josef Voglmeir; Katharina Paschinger; Iain Wilson
Comparative characterisation of recombinant invertebrate and vertebrate peptide O-Xylosyltransferases.
Glycoconjugate journal 2006;23(7-8):543-54.
2006: Veena C Yeruva; Sridevi Duggirala; Vemu Lakshmi; Daniel Kolarich; Friedrich Altmann; Manjula Sritharan
Identification and characterization of a major cell wall-associated iron-regulated envelope protein (Irep-28) in Mycobacterium tuberculosis.
Clinical and vaccine immunology : CVI 2006;13(10):1137-42.
2006: Daniel Kolarich; Alfred Weber; Peter L Turecek; Hans Peter Schwarz; Friedrich Altmann
Comprehensive glyco-proteomic analysis of human alpha1-antitrypsin and its charge isoforms.
Proteomics 2006;6(11):3369-80.
2006: Reinhard Zeleny; Daniel Kolarich; Richard Strasser; Friedrich Altmann
Sialic acid concentrations in plants are in the range of inadvertent contamination.
Planta 2006;224(1):222-7.
2006: Klaus Stolze; Natascha Rohr-Udilova; Thomas Rosenau; Andreas Hofinger; Daniel Kolarich; Hans Nohl
Spin trapping of C- and O-centered radicals with methyl-, ethyl-, pentyl-, and phenyl-substituted EMPO derivatives.
Bioorganic & medicinal chemistry 2006;14(10):3368-76.
2006: Reinhard Zeleny; Renaud Leonard; Georg Dorfner; Thomas Dalik; Daniel Kolarich; Friedrich Altmann
Molecular cloning and characterization of a plant alpha1,3/4-fucosidase based on sequence tags from almond fucosidase I.
Phytochemistry 2006;67(7):641-8.
2006: Daniel Kolarich; Friedrich Altmann; Elumalai Sunderasan
Structural analysis of the glycoprotein allergen Hev b 4 from natural rubber latex by mass spectrometry.
Biochimica et biophysica acta 2006;1760(4):715-20.
2005: Daniel Kolarich; Renaud Léonard; Wolfgang Hemmer; Friedrich Altmann
The N-glycans of yellow jacket venom hyaluronidases and the protein sequence of its major isoform in Vespula vulgaris.
The FEBS journal 2005;272(20):5182-90.
2005: Peter Bencúr; Herta Steinkellner; Barbara Svoboda; Jan Mucha; Richard Strasser; Daniel Kolarich; Stephan Hann; Gunda Köllensperger; Josef Glössl; Friedrich Altmann; Lukas Mach
Arabidopsis thaliana beta1,2-xylosyltransferase: an unusual glycosyltransferase with the potential to act at multiple stages of the plant N-glycosylation pathway.
The Biochemical journal 2005;388(Pt 2):515-25.
2005: Hanspeter Kählig; Daniel Kolarich; Sonja Zayni; Andrea Scheberl; kosma paul; Christina Schäffer; Paul Messner
N-acetylmuramic acid as capping element of alpha-D-fucose-containing S-layer glycoprotein glycans from Geobacillus tepidamans GS5-97T.
The Journal of biological chemistry 2005;280(21):20292-9.
2005: Renaud Leonard; bent petersen; Martin Himly; Waltraud Kaar; Nicole Wopfner; Daniel Kolarich; Ronald van Ree; Christof Ebner; Jens O Duus; Fatima Ferreira; Friedrich Altmann
Two novel types of O-glycans on the mugwort pollen allergen Art v 1 and their role in antibody binding.
The Journal of biological chemistry 2005;280(9):7932-40.
2004: Elsa Arcalis; Sylvain Marcel; Friedrich Altmann; Daniel Kolarich; Georgia Drakakaki; Rainer Fischer; Paul Christou; Eva Stoger
Unexpected deposition patterns of recombinant proteins in post-endoplasmic reticulum compartments of wheat endosperm.
Plant physiology 2004;136(3):3457-66.
2004: Iris Lauer; Kay Foetisch; Daniel Kolarich; Barbara K Ballmer-Weber; Amedeo Conti; Friedrich Altmann; Stefan Vieths; Stephan Scheurer
Hazelnut (Corylus avellana) vicilin Cor a 11: molecular characterization of a glycoprotein and its allergenic activity.
The Biochemical journal 2004;383(Pt 2):327-34.
2004: Renaud Léonard; Daniel Kolarich; Katharina Paschinger; Friedrich Altmann; Iain Wilson
A genetic and structural analysis of the N-glycosylation capabilities.
Plant molecular biology 2004;55(5):631-44.
2004: Daniel Wicklein; Buko Lindner; Hermann Moll; Daniel Kolarich; Friedrich Altmann; Wolf-Meinhard Becker; Arnd Petersen
Carbohydrate moieties can induce mediator release: a detailed characterization of two major timothy grass pollen allergens.
Biological chemistry 2004;385(5):397-407.
2004: Wolfgang Hemmer; Margarete Focke; Daniel Kolarich; I Dalik; M Götz; Reinhart Jarisch
Identification by immunoblot of venom glycoproteins displaying immunoglobulin E-binding N-glycans as cross-reactive allergens in honeybee and yellow jacket venom.
Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology 2004;34(3):460-9.
2003: Christa Jakopitsch; Daniel Kolarich; Gabriele Petutschnig; Paul Georg Furtmüller; Christian Obinger
Distal side tryptophan, tyrosine and methionine in catalase-peroxidases are covalently linked in solution.
FEBS letters 2003;552(2-3):135-40.
2003: Monika Krebitz; Birgit Wagner; Fatima Ferreira; Clemens Peterbauer; Nuria Campillo; Michael Witty; Daniel Kolarich; Herta Steinkellner; Otto Scheiner; Heimo Breiteneder
Plant-based heterologous expression of Mal d 2, a thaumatin-like protein and allergen of apple (Malus domestica), and its characterization as an antifungal protein.
Journal of molecular biology 2003;329(4):721-30.
2003: Kay Foetisch; Sandra Westphal; Iris Lauer; Mechthild Retzek; Friedrich Altmann; Daniel Kolarich; Stephan Scheurer; Stefan Vieths
Biological activity of IgE specific for cross-reactive carbohydrate determinants.
The Journal of allergy and clinical immunology 2003;111(4):889-96.
2003: Sandra Westphal; Daniel Kolarich; Kay Foetisch; Iris Lauer; Friedrich Altmann; Amedeo Conti; Jesus F Crespo; Julia Rodríguez; Ernesto Enrique; Stefan Vieths; Stephan Scheurer
Molecular characterization and allergenic activity of Lyc e 2 (beta-fructofuranosidase), a glycosylated allergen of tomato.
European journal of biochemistry / FEBS 2003;270(6):1327-37.
2001: Wolfgang Hemmer; Margarete Focke; Daniel Kolarich; Iain Wilson; Friedrich Altmann; Stefan Wöhrl; M Götz; Reinhart Jarisch
Antibody binding to venom carbohydrates is a frequent cause for double positivity to honeybee and yellow jacket venom in patients with stinging-insect allergy.
The Journal of allergy and clinical immunology 2001;108(6):1045-52.
2001: Iain Wilson; Reinhard Zeleny; Daniel Kolarich; Erika Staudacher; CJ Stroop; Johannis P Kamerling; Friedrich Altmann
Analysis of Asn-linked glycans from vegetable foodstuffs: widespread occurrence of Lewis a, core alpha1,3-linked fucose and xylose substitutions.
Glycobiology 2001;11(4):261-74.
2000: Daniel Kolarich; Friedrich Altmann
N-Glycan analysis by matrix-assisted laser desorption/ionization mass spectrometry of electrophoretically separated nonmammalian proteins: application to peanut allergen Ara h 1 and olive pollen allergen Ole e 1.
Analytical biochemistry 2000;285(1):64-75.