FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

maricus MR

Research Profile

Chemicals & Drugs

Concepts & Ideas

Activities & Behaviors

Procedures

Co-author Network

Publications

TOP 3
Carsten Kemena; maricus MR; Giovanni Bussotti; Emidio Capriotti; Cédric Notredame
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
Carlos Baeza-Delgado; maricus MR; Ismael Mingarro
Structure-based statistical analysis of transmembrane helices.
Davide Baù; maricus MR
Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of maricus MR (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2013: Carsten Kemena; maricus MR; Giovanni Bussotti; Emidio Capriotti; Cédric Notredame
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.
Bioinformatics (Oxford, England) 2013;29(9):1112-9.
2013: Carlos Baeza-Delgado; maricus MR; Ismael Mingarro
Structure-based statistical analysis of transmembrane helices.
European biophysics journal : EBJ 2013;42(2-3):199-207.
2012: Davide Baù; maricus MR
Genome structure determination via 3C-based data integration by the Integrative Modeling Platform.
Methods (San Diego, Calif.) 2012;58(3):300-6.
2012: Manuel Bañó-Polo; maricus MR; Concepción Abad; Carlos Baeza-Delgado; Mar Orzáez; Ismael Mingarro
Polar/Ionizable residues in transmembrane segments: effects on helix-helix packing.
PloS one 2012;7(9):e44263.
2011: Luis Martínez-Gil; maricus MR; Ana Sauri; Ismael Mingarro
Membrane protein integration into the endoplasmic reticulum.
The FEBS journal 2011;278(20):3846-58.
2011: Emidio Capriotti; Tomas Norambuena; maricus MR; Francisco Melo
All-atom knowledge-based potential for RNA structure prediction and assessment.
Bioinformatics (Oxford, England) 2011;27(8):1086-93.
2011: Davide Baù; Amartya Sanyal; Bryan R Lajoie; Emidio Capriotti; Meg Byron; Jeanne B Lawrence; Job Dekker; maricus MR
The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules.
Nature structural & molecular biology 2011;18(1):107-14.
2011: Manuel Bañó-Polo; Francesca Baldin; Silvia Tamborero; maricus MR; Ismael Mingarro
N-glycosylation efficiency is determined by the distance to the C-terminus and the amino acid preceding an Asn-Ser-Thr sequon.
Protein science : a publication of the Protein Society 2011;20(1):179-86.
2010: Emidio Capriotti; maricus MR
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA.
BMC bioinformatics 2010;11():322.
2009: Mallur S Madhusudhan; Benjamin M Webb; maricus MR; Narayanan Eswar; Andrej Sali
Alignment of multiple protein structures based on sequence and structure features.
Protein engineering, design & selection : PEDS 2009;22(9):569-74.
2009: Emidio Capriotti; maricus MR
SARA: a server for function annotation of RNA structures.
Nucleic acids research 2009;37(Web Server issue):W260-5.
2009: Oriol Fornes; Ramon Aragues; Jordi Espadaler; maricus MR; Andrej Sali; baldomero oliva
ModLink+: improving fold recognition by using protein-protein interactions.
Bioinformatics (Oxford, England) 2009;25(12):1506-12.
2009: Leticia Ortí; Rodrigo J Carbajo; Ursula Pieper; Narayanan Eswar; Stephen M Maurer; Arti K Rai; Ginger Taylor; Matthew H Todd; Antonio Pineda-Lucena; Andrej Sali; maricus MR
A kernel for the Tropical Disease Initiative.
Nature biotechnology 2009;27(4):320-1.
2009: Leticia Ortí; Rodrigo J Carbajo; Ursula Pieper; Narayanan Eswar; Stephen M Maurer; Arti K Rai; Ginger Taylor; Matthew H Todd; Antonio Pineda-Lucena; Andrej Sali; maricus MR
A kernel for open source drug discovery in tropical diseases.
PLoS neglected tropical diseases 2009;3(4):e418.
2009: Ursula Pieper; Narayanan Eswar; Ben M Webb; David Eramian; Libusha Kelly; David T Barkan; Hannah Carter; Parminder Mankoo; Rachel Karchin; maricus MR; Fred P Davis; Andrej Sali
MODBASE, a database of annotated comparative protein structure models and associated resources.
Nucleic acids research 2009;37(Database issue):D347-54.
2008: Emidio Capriotti; maricus MR
RNA structure alignment by a unit-vector approach.
Bioinformatics (Oxford, England) 2008;24(16):i112-8.
2008: Jordi Espadaler; Narayanan Eswar; Enrique Querol; Francesc X Avilés; Andrej Sali; maricus MR; baldomero oliva
Prediction of enzyme function by combining sequence similarity and protein interactions.
BMC bioinformatics 2008;9():249.
2008: Alejandro Panjkovich; Francisco Melo; maricus MR
Evolutionary potentials: structure specific knowledge-based potentials exploiting the evolutionary record of sequence homologs.
Genome biology 2008;9(4):R68.
2008: Emidio Capriotti; Leonardo Arbiza; Rita Casadio; Joaquín Dopazo; Hernan Dopazo; maricus MR
Use of estimated evolutionary strength at the codon level improves the prediction of disease-related protein mutations in humans.
Human mutation 2008;29(1):198-204.
2007: Narayanan Eswar; Ben Webb; maricus MR; Mallur S Madhusudhan; David Eramian; Min-Yi Shen; Ursula Pieper; Andrej Sali
Comparative protein structure modeling using MODELLER.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2007;Chapter 2():Unit 2.9.
2007: Will A Stanley; Krisztian Fodor; maricus MR; Wolfgang Schliebs; Matthias Wilmanns
Protein translocation into peroxisomes by ring-shaped import receptors.
FEBS letters 2007;581(25):4795-802.
2007: Ramon Aragues; Andrej Sali; Jaume Bonet; maricus MR; baldomero oliva
Characterization of protein hubs by inferring interacting motifs from protein interactions.
PLoS computational biology 2007;3(9):1761-71.
2007: maricus MR; Ursula Pieper; Mallur S Madhusudhan; Andrea Rossi; Narayanan Eswar; Fred P Davis; Fátima Al-Shahrour; Joaquín Dopazo; Andrej Sali
DBAli tools: mining the protein structure space.
Nucleic acids research 2007;35(Web Server issue):W393-7.
2007: maricus MR; Andrea Rossi; Fátima Al-Shahrour; Fred P Davis; Ursula Pieper; Joaquín Dopazo; Andrej Sali
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.
BMC bioinformatics 2007;8 Suppl 4():S4.
2006: Narayanan Eswar; Ben Webb; maricus MR; Mallur S Madhusudhan; David Eramian; Min-Yi Shen; Ursula Pieper; Andrej Sali
Comparative protein structure modeling using Modeller.
Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.] 2006;Chapter 5():Unit 5.6.
2006: Andrea Rossi; maricus MR; Andrej Sali
Localization of binding sites in protein structures by optimization of a composite scoring function.
Protein science : a publication of the Protein Society 2006;15(10):2366-80.
2006: David Eramian; Min-yi Shen; Damien Devos; Francisco Melo; Andrej Sali; maricus MR
A composite score for predicting errors in protein structure models.
Protein science : a publication of the Protein Society 2006;15(7):1653-66.
2006: Francisco Melo; maricus MR
Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.
Proteins 2006;63(4):986-95.
2006: Maya Topf; Matthew Baker; maricus MR; Wah Chiu; Andrej Sali
Refinement of protein structures by iterative comparative modeling and CryoEM density fitting.
Journal of molecular biology 2006;357(5):1655-68.
2006: Mallur S Madhusudhan; maricus MR; Roberto Sanchez; Andrej Sali
Variable gap penalty for protein sequence-structure alignment.
Protein engineering, design & selection : PEDS 2006;19(3):129-33.
2006: Ursula Pieper; Narayanan Eswar; Fred P Davis; Hannes Braberg; Mallur S Madhusudhan; Andrea Rossi; maricus MR; Rachel Karchin; Ben M Webb; David Eramian; Min-Yi Shen; Libusha Kelly; Francisco Melo; Andrej Sali
MODBASE: a database of annotated comparative protein structure models and associated resources.
Nucleic acids research 2006;34(Database issue):D291-5.
2005: Stephen McMahon; Jason L Miller; Jeffrey A Lawton; Donald E Kerkow; Asher Hodes; maricus MR; Sergei R Doulatov; Eswar Narayanan; Andrej Sali; Jeff F Miller; Partho Ghosh
The C-type lectin fold as an evolutionary solution for massive sequence variation.
Nature structural & molecular biology 2005;12(10):886-92.
2005: Jordi Espadaler; Ramón Aragüés; Narayanan Eswar; maricus MR; Enrique Querol; Francesc X Avilés; Andrej Sali; baldomero oliva
Detecting remotely related proteins by their interactions and sequence similarity.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(20):7151-6.
2004: Nebojsa Mirkovic; maricus MR; Barbara L Weber; Andrej Sali; Alvaro Monteiro
Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition.
Cancer research 2004;64(11):3790-7.
2004: maricus MR; Mallur S Madhusudhan; Andrej Sali
Alignment of protein sequences by their profiles.
Protein science : a publication of the Protein Society 2004;13(4):1071-87.
2004: Ursula Pieper; Narayanan Eswar; Hannes Braberg; Mallur S Madhusudhan; Fred P Davis; Ashley C Stuart; Nebojsa Mirkovic; Andrea Rossi; maricus MR; András Fiser; Ben Webb; Daniel Greenblatt; Conrad C Huang; Thomas E Ferrin; Andrej Sali
MODBASE, a database of annotated comparative protein structure models, and associated resources.
Nucleic acids research 2004;32(Database issue):D217-22.
2003: Narayanan Eswar; Bino John; Nebojsa Mirkovic; András Fiser; Valentin A Ilyin; Ursula Pieper; Ashley C Stuart; maricus MR; Mallur S Madhusudhan; Bozidar Yerkovich; Andrej Sali
Tools for comparative protein structure modeling and analysis.
Nucleic acids research 2003;31(13):3375-80.
2003: Ingrid Y Y Koh; Volker A Eyrich; maricus MR; Dariusz Przybylski; Mallur S Madhusudhan; Narayanan Eswar; Osvaldo Graña; Florencio Pazos; Carmen Galvez; Andrej Sali; Burkhard Rost
EVA: Evaluation of protein structure prediction servers.
Nucleic acids research 2003;31(13):3311-5.
2003: Valentin A Ilyin; Ursula Pieper; Ashley C Stuart; maricus MR; Linda McMahan; Andrej Sali
ModView, visualization of multiple protein sequences and structures.
Bioinformatics (Oxford, England) 2003;19(1):165-6.
2002: G Michael Iverson; Stephen Reddel; Edward J Victoria; Keith A Cockerill; Ying-Xia Wang; maricus MR; Andrej Sali; David M Marquis; Steven A Krilis; Matthew D Linnik
Use of single point mutations in domain I of beta 2-glycoprotein I to determine fine antigenic specificity of antiphospholipid autoantibodies.
Journal of immunology (Baltimore, Md. : 1950) 2002;169(12):7097-103.
2002: maricus MR; Mallur S Madhusudhan; András Fiser; Burkhard Rost; Andrej Sali
Reliability of assessment of protein structure prediction methods.
Structure (London, England : 1993) 2002;10(3):435-40.