FIND

researchers

DISCOVER

relevant articles

PROMOTE

your research

now for free

John Carlis

Research Profile

Living Beings

Disorders

Occupations

Proteomics

Anatomy

Chemicals & Drugs

Procedures

Co-author Network

Publications

TOP 3
Susan K Van Riper; John V Carlis; Ebbing P de Jong; Timothy J Griffin
Mass spectrometry-based proteomics: basic principles and emerging technologies and directions.
Ebbing P de Jong; Joseph S Koopmeiners; Susan K van Riper; John V Carlis; Timothy J Griffin
Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery.
Sricharan Bandhakavi; Susan K Van Riper; Pierre N Tawfik; Matthew D Stone; Tufia Haddad; Nelson L Rhodus; John V Carlis; Timothy J Griffin
Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.

Register for free to view:

Visualized networks:

See your personal network in
sophisticated graphical views

GeoTargeted Searches:

Locate experts around the world
and connect with global collaborators

Research Profiles:

See the research activity
of experts around the globe

Geonetwork of John Carlis (preview)

Cities where this author has publications
Cities where co-authors of this author have publications

Flash Player Required

All Publications

2013: Susan K Van Riper; John V Carlis; Ebbing P de Jong; Timothy J Griffin
Mass spectrometry-based proteomics: basic principles and emerging technologies and directions.
Advances in experimental medicine and biology 2013;990():1-35.
2011: Ebbing P de Jong; Joseph S Koopmeiners; Susan K van Riper; John V Carlis; Timothy J Griffin
Sample collection and handling considerations for peptidomic studies in whole saliva; implications for biomarker discovery.
Clinica chimica acta; international journal of clinical chemistry 2011;412(23-24):2284-8.
2011: Sricharan Bandhakavi; Susan K Van Riper; Pierre N Tawfik; Matthew D Stone; Tufia Haddad; Nelson L Rhodus; John V Carlis; Timothy J Griffin
Hexapeptide libraries for enhanced protein PTM identification and relative abundance profiling in whole human saliva.
Journal of proteome research 2011;10(3):1052-61.
2011: Ming Zeng; Anthony J Smith; Stephen W Wietgrefe; Peter J Southern; Timothy W Schacker; Cavan S Reilly; Jacob D Estes; GREGORY BURTON; Guido Silvestri; Jeffrey D Lifson; John V Carlis; Ashley T Haase
Cumulative mechanisms of lymphoid tissue fibrosis and T cell depletion in HIV-1 and SIV infections.
The Journal of clinical investigation 2011;121(3):998-1008.
2010: Getiria Onsongo; Matthew D Stone; Susan K Van Riper; John Chilton; Baolin Wu; LeeAnn Higgins; Troy Lund; John V Carlis; Timothy J Griffin
LTQ-iQuant: A freely available software pipeline for automated and accurate protein quantification of isobaric tagged peptide data from LTQ instruments.
Proteomics 2010;10(19):3533-8.
2010: Jose Pardo; Joel T Lee; Michael A Kuskowski; Kristin R Munch; John V Carlis; Sohail A Sheikh; Christa Surerus; Scott M Lewis; J Riley McCarten; Howard Fink; Susan McPherson; Hemant H Shah; Susan Rottunda; Maurice W Dysken
Fluorodeoxyglucose positron emission tomography of mild cognitive impairment with clinical follow-up at 3 years.
Alzheimer's & dementia : the journal of the Alzheimer's Association 2010;6(4):326-33.
2010: John V Carlis; Kelsey Bruso
How many clusters to report: a recursive heuristic.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2010;2010():1069-72.
2010: Ebbing P de Jong; Hongwei Xie; Getiria Onsongo; Matthew D Stone; Xiao-Bing Chen; Joel A Kooren; Eric W Refsland; Robert J Griffin; Frank G Ondrey; Baolin Wu; Chap T Le; Nelson L Rhodus; John V Carlis; Timothy J Griffin
Quantitative proteomics reveals myosin and actin as promising saliva biomarkers for distinguishing pre-malignant and malignant oral lesions.
PloS one 2010;5(6):e11148.
2009: Steven E Bosinger; Qingsheng Li; Shari N Gordon; Nichole R Klatt; Lijie Duan; Luoling Xu; Nicholas Francella; Abubaker Sidahmed; Anthony J Smith; Elizabeth M Cramer; Ming Zeng; David Masopust; John V Carlis; Longsi Ran; Thomas H Vanderford; Mirko Paiardini; R Benjamin Isett; Don A Baldwin; James ELSE; Silvija I Staprans; Guido Silvestri; Ashley T Haase; David J Kelvin
Global genomic analysis reveals rapid control of a robust innate response in SIV-infected sooty mangabeys.
The Journal of clinical investigation 2009;119(12):3556-72.
2009: Qingsheng Li; Anthony J Smith; Timothy W Schacker; John V Carlis; Lijie Duan; Cavan S Reilly; Ashley T Haase
Microarray analysis of lymphatic tissue reveals stage-specific, gene expression signatures in HIV-1 infection.
Journal of immunology (Baltimore, Md. : 1950) 2009;183(3):1975-82.
2009: Qingsheng Li; Jacob D Estes; Patrick M Schlievert; Lijie Duan; Amanda J Brosnahan; Peter J Southern; Cavan S Reilly; Marnie L Peterson; Nancy J Schultz-Darken; Kevin G Brunner; Karla R Nephew; Stefan E Pambuccian; Jeffrey D Lifson; John V Carlis; Ashley T Haase
Glycerol monolaurate prevents mucosal SIV transmission.
Nature 2009;458(7241):1034-8.
2009: Qingsheng Li; Pamela J Skinner; Sang-Jun Ha; Lijie Duan; Teresa L Mattila; Aaron Hage; Cara White; Daniel L Barber; Leigh O'Mara; Peter J Southern; Cavan S Reilly; John V Carlis; Christopher J Miller; Rafi Ahmed; Ashley T Haase
Visualizing antigen-specific and infected cells in situ predicts outcomes in early viral infection.
Science (New York, N.Y.) 2009;323(5922):1726-9.
2008: Hongwei Xie; Getiria Onsongo; Jonathan Popko; Ebbing P de Jong; Jing Cao; John V Carlis; Robert J Griffin; Nelson L Rhodus; Timothy J Griffin
Proteomics analysis of cells in whole saliva from oral cancer patients via value-added three-dimensional peptide fractionation and tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2008;7(3):486-98.
2008: Qingsheng Li; Jacob D Estes; Lijie Duan; Jose Jessurun; Stefan Pambuccian; Colleen Forster; Stephen Wietgrefe; Mary Zupancic; Timothy W Schacker; Cavan Reilly; John V Carlis; Ashley T Haase
Simian immunodeficiency virus-induced intestinal cell apoptosis is the underlying mechanism of the regenerative enteropathy of early infection.
The Journal of infectious diseases 2008;197(3):420-9.
2008: Kristin R Munch; John V Carlis; Jose Pardo; Joel T Lee
Bringing functional brain image analysis to the clinician: initial assessment of an online interactive diagnostic aide.
Computers in biology and medicine 2008;38(2):155-64.
2008: Joel T Lee; Kristin R Munch; John V Carlis; Jose Pardo
Internet image viewer (iiV).
BMC medical imaging 2008;8():10.
2007: Timothy J Griffin; Hongwei Xie; Sricharan Bandhakavi; Jonathan Popko; Archana Mohan; John V Carlis; LeeAnn Higgins
iTRAQ reagent-based quantitative proteomic analysis on a linear ion trap mass spectrometer.
Journal of proteome research 2007;6(11):4200-9.
2007: Jose Pardo; Joel T Lee; Sohail A Sheikh; Christa Surerus-Johnson; Hemant Shah; Kristin R Munch; John V Carlis; Scott M Lewis; Michael A Kuskowski; Maurice W Dysken
Where the brain grows old: decline in anterior cingulate and medial prefrontal function with normal aging.
NeuroImage 2007;35(3):1231-7.
2007: Jacob D Estes; Stephen Wietgrefe; Timothy W Schacker; Peter J Southern; Gregory Beilman; Cavan Reilly; Jeffrey M Milush; Jeffrey D Lifson; Donald L Sodora; John V Carlis; Ashley T Haase
Simian immunodeficiency virus-induced lymphatic tissue fibrosis is mediated by transforming growth factor beta 1-positive regulatory T cells and begins in early infection.
The Journal of infectious diseases 2007;195(4):551-61.
2006: Jacob D Estes; Qingsheng Li; Matthew R Reynolds; Stephen Wietgrefe; Lijie Duan; Timothy W Schacker; Louis J Picker; David Ian Watkins; Jeffrey D Lifson; Cavan Reilly; John V Carlis; Ashley T Haase
Premature induction of an immunosuppressive regulatory T cell response during acute simian immunodeficiency virus infection.
The Journal of infectious diseases 2006;193(5):703-12.
2005: Hongwei Xie; Nelson L Rhodus; Robert J Griffin; John V Carlis; Timothy J Griffin
A catalogue of human saliva proteins identified by free flow electrophoresis-based peptide separation and tandem mass spectrometry.
Molecular & cellular proteomics : MCP 2005;4(11):1826-30.
2005: Qingsheng Li; Jeffrey D Lifson; Lijie Duan; Timothy W Schacker; Cavan Reilly; John V Carlis; Jacob D Estes; Ashley T Haase
Potential roles of follicular dendritic cell-associated osteopontin in lymphoid follicle pathology and repair and in B cell regulation in HIV-1 and SIV infection.
The Journal of infectious diseases 2005;192(7):1269-76.
2005: Christopher J Miller; Qingsheng Li; Kristina Abel; Eun-Young Kim; Zhong-Min Ma; Stephen Wietgrefe; Lisa La Franco-Scheuch; Lara Compton; Lijie Duan; Marta Dykhuizen Shore; Mary Zupancic; Marc Busch; John V Carlis; Steven Wolinsky; Steven Wolinksy; Ashley T Haase
Propagation and dissemination of infection after vaginal transmission of simian immunodeficiency virus.
Journal of virology 2005;79(14):9217-27.
2005: Qingsheng Li; Lijie Duan; Jacob D Estes; Zhong-Min Ma; Tracy Rourke; Yichuan Wang; Cavan Reilly; John V Carlis; Christopher J Miller; Ashley T Haase
Peak SIV replication in resting memory CD4+ T cells depletes gut lamina propria CD4+ T cells.
Nature 2005;434(7037):1148-52.
2004: Qingsheng Li; Timothy W Schacker; John V Carlis; Gregory Beilman; Phuong Nguyen; Ashley T Haase
Functional genomic analysis of the response of HIV-1-infected lymphatic tissue to antiretroviral therapy.
The Journal of infectious diseases 2004;189(4):572-82.
2002: John V Carlis
Pitfalls and paths to success in interdisciplinary scientific database research.
IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society 2002;21(6):117-22.