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Manohar Furtado

Research Profile

Living Beings

HIV-1

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Publications

TOP 3
Amy S Gargis; Ute Geigenmüller; Sandra J Gunselman; Tina Hambuch; Madhuri R Hegde; Philip L F Johnson; Lisa Kalman; Andrew Kasarskis; Shashikant Kulkarni; Thomas Lenk; C S Jonathan Liu; Fei Lu; Richa Agarwala; Sarah F Bennett; Meredith W Berry; David P Bick; Bin Chen; Ephrem L H Chin; John G Compton; Soma Das; David P Dimmock; Daniel H Farkas; Matthew J Ferber; Birgit H Funke; Manohar R Furtado; Lilia M Ganova-Raeva; Elaine Lyon; Megan Manion; Teri A Manolio; Elaine R Mardis; Jason D Merker; Mangalathu S Rajeevan; Martin G Reese; Heidi L Rehm; Birgitte B Simen; Karl V Voelkerding; Joanne M Yeakley; Barbara A Zehnbauer; Justin M Zook; Ira M Lubin
Assuring the quality of next-generation sequencing in clinical laboratory practice.
Andrew J Pakstis; Rixun Fang; Manohar R Furtado; Judith R Kidd; Kenneth K Kidd
Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.
Lily Y Wong; Patrick Zoder; Priya Balachandran; Yanxiang Cao; Manohar R Furtado; Olga V Petrauskene; Robert S Tebbs
Validation of the Applied Biosystems MicroSEQ real-time PCR system for detection of E. coli O157:H7 in food.

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All Publications

2012: Amy S Gargis; Ute Geigenmüller; Sandra J Gunselman; Tina Hambuch; Madhuri R Hegde; Philip L F Johnson; Lisa Kalman; Andrew Kasarskis; Shashikant Kulkarni; Thomas Lenk; C S Jonathan Liu; Fei Lu; Richa Agarwala; Sarah F Bennett; Meredith W Berry; David P Bick; Bin Chen; Ephrem L H Chin; John G Compton; Soma Das; David P Dimmock; Daniel H Farkas; Matthew J Ferber; Birgit H Funke; Manohar R Furtado; Lilia M Ganova-Raeva; Elaine Lyon; Megan Manion; Teri A Manolio; Elaine R Mardis; Jason D Merker; Mangalathu S Rajeevan; Martin G Reese; Heidi L Rehm; Birgitte B Simen; Karl V Voelkerding; Joanne M Yeakley; Barbara A Zehnbauer; Justin M Zook; Ira M Lubin
Assuring the quality of next-generation sequencing in clinical laboratory practice.
Nature biotechnology 2012;30(11):1033-6.
2012: Andrew J Pakstis; Rixun Fang; Manohar R Furtado; Judith R Kidd; Kenneth K Kidd
Mini-haplotypes as lineage informative SNPs and ancestry inference SNPs.
European journal of human genetics : EJHG 2012;20(11):1148-54.
2012: Lily Y Wong; Patrick Zoder; Priya Balachandran; Yanxiang Cao; Manohar R Furtado; Olga V Petrauskene; Robert S Tebbs
Validation of the Applied Biosystems MicroSEQ real-time PCR system for detection of E. coli O157:H7 in food.
Journal of AOAC International 2012;95(5):1495-504.
2012: Kenneth K Kidd; William C Speed; Rixun Fang; Manohar R Furtado; F C L Hyland; Judith R Kidd; Andrew J Pakstis
Expanding data and resources for forensic use of SNPs in individual identification.
Forensic science international. Genetics 2012;6(5):646-52.
2012: Olga V Petrauskene; Priya Balachandran; Yanxiang Cao; Manohar R Furtado; Lily Y Wong; Patrick Zoder; Robert S Tebbs
Evaluation of applied biosystems MicroSEQ real-time PCR system for detection of Listeria spp. in food and environmental samples.
Journal of AOAC International 2012;95(4):1074-83.
2012: John F Regan; Maxim G Brevnov; Manohar R Furtado; Jeanne A Jordan
A sample extraction method for faster, more sensitive PCR-based detection of pathogens in blood culture.
The Journal of molecular diagnostics : JMD 2012;14(2):120-9.
2012: Priya Balachandran; Patrick Bird; Maxim Brevnov; Erin Crowley; Maria Friberg; Manohar R Furtado; David Goins; K Kozak; Amanda Manolis; Olga V Petrauskene; Robert S Tebbs; V Vanlandingham; Duane Charbonneau
Rapid detection of Salmonella in pet food: design and evaluation of integrated methods based on real-time PCR detection.
Journal of food protection 2012;75(2):347-52.
2012: Susan Joseph; Naqash Masood; Michael McClelland; Alain Rico; Rita Shih; Hana Sonbol; Pius Brzoska; Nadia Chuzhanova; Craig A Cummings; Lovorka Degoricija; Prerak Desai; Manohar R Furtado; Stephen E Hamby; Sumyya Hariri; Yongmei Ji; Stephen J Forsythe
Comparative analysis of genome sequences covering the seven cronobacter species.
PloS one 2012;7(11):e49455.
2012: Andrea I Moreno Switt; Joseph E Peters; Matthew L Raneiri; Lorraine D Rodriguez-Rivera; Elena Bolchacova; Stephanie Brown; Craig A Cummings; Lovorka Degoricija; Henk C den Bakker; Manohar R Furtado; Gregory Govoni; Karin Hoelzer; Martin Wiedmann
Identification and characterization of novel Salmonella mobile elements involved in the dissemination of genes linked to virulence and transmission.
PloS one 2012;7(7):e41247.
2012: Jolene R Bowers; Pius M Brzoska; Elizabeth M Driebe; David M Engelthaler; Manohar R Furtado; Nathaniel Hubert; Andrew Knadler; Jennifer L Nibecker; Derek S Sarovich; Michael Saubolle; David M Wagner; Lindsey M Watson; Bette R Wojack; Ada H Wong; Paul S Keim
Dominance of multidrug resistant CC271 clones in macrolide-resistant streptococcus pneumoniae in Arizona.
BMC microbiology 2012;12():12.
2011: Henk C den Bakker; Rixun Fang; Manohar R Furtado; Karin Hoelzer; Laura Kornstein; Andrea I Moreno Switt; Kimberlee A Musser; Lorraine D Rodriguez-Rivera; Tim Root; Dianna Schoonmaker-Bopp; Elizabeth Villamil; Haena Waechter; Craig A Cummings; Margaret Davis; Lovorka Degoricija; Emily M Wright; Martin Wiedmann
A whole-genome single nucleotide polymorphism-based approach to trace and identify outbreaks linked to a common Salmonella enterica subsp. enterica serovar Montevideo pulsed-field gel electrophoresis type.
Applied and environmental microbiology 2011;77(24):8648-55.
2011: Judith R Kidd; Rixun Fang; Françoise R Friedlaender; Manohar R Furtado; Caroline M Nievergelt; Andrew J Pakstis; Xudong Wang; Kenneth K Kidd
Single nucleotide polymorphisms and haplotypes in Native American populations.
American journal of physical anthropology 2011;146(4):495-502.
2011: Robert S Tebbs; Priya Balachandran; Manohar R Furtado; Lily Y Wong; Olga V Petrauskene; Patrick Zoder; Yanxiang Cao
Evaluation of applied biosystems MicroSeq real-time PCR system for detection of Listeria monocytogenes in food. Performance Tested Method 011002.
Journal of AOAC International 2011;94(5):1481-9.
2011: Priya Balachandran; Yanxiang Cao; Manohar R Furtado; Olga V Petrauskene; Lily Wong; Robert S Tebbs
Evaluation of applied biosystems MicroSEQ real-time PCR system for detection of Salmonella spp. in food.
Journal of AOAC International 2011;94(4):1106-16.
2011: Andrew J Wyrobek; C F Manohar; Viswanathan V Krishnan; David O Nelson; Manohar R Furtado; M S Bhattacharya; Francesco Marchetti; Matthew A Coleman
Low dose radiation response curves, networks and pathways in human lymphoblastoid cells exposed from 1 to 10cGy of acute gamma radiation.
Mutation research 2011;722(2):119-30.
2011: Robert S Tebbs; Pius M Brzoska; Manohar R Furtado; Olga V Petrauskene
Design and validation of a novel multiplex real-time PCR assay for Vibrio pathogen detection.
Journal of food protection 2011;74(6):939-48.
2011: Henk C den Bakker; Manohar R Furtado; Gregory Govoni; Karin Hoelzer; Andrea I Moreno Switt; Matthew L Ranieri; Lorraine D Rodriguez-Rivera; Elena Bolchacova; Stephanie Brown; Craig A Cummings; Lovorka Degoricija; Martin Wiedmann
Genome sequencing reveals diversification of virulence factor content and possible host adaptation in distinct subpopulations of Salmonella enterica.
BMC genomics 2011;12():425.
2010: Rita Barallon; Steven R Bauer; John Butler; Amanda Capes-Davis; Wilhelm G Dirks; Eugene Elmore; Manohar R Furtado; Margaret C Kline; Arihiro Kohara; Georgyi V Los; Roderick A F MacLeod; John R W Masters; Mark Nardone; Roland M Nardone; Raymond W Nims; Paul J Price; Yvonne A Reid; Jaiprakash Shewale; Gregory Sykes; Anton F Steuer; Douglas R Storts; Jim Thomson; Zenobia Taraporewala; Christine Alston-Roberts; Liz Kerrigan
Recommendation of short tandem repeat profiling for authenticating human cell lines, stem cells, and tissues.
In vitro cellular & developmental biology. Animal 2010;46(9):727-32.
2010: Kaye N Ballantyne; Miriam Goedbloed; Rixun Fang; Onno Schaap; Oscar Lao; Andreas Wollstein; Ying Choi; Kate van Duijn; Mark Vermeulen; Silke Brauer; Ronny Decorte; Micaela Poetsch; Nicole von Wurmb-Schwark; Peter de Knijff; Damian Labuda; Hélène Vézina; Hans Knoblauch; Rüdiger Lessig; Lutz Roewer; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Mutability of Y-chromosomal microsatellites: rates, characteristics, molecular bases, and forensic implications.
American journal of human genetics 2010;87(3):341-53.
2010: Olga V Petrauskene; Michael A Schumaker; Yvonne Thorstenson; Catherine Fearnley; Theo Pavlidis; Sueh-Ning Liew; Jennifer Cork; Manohar R Furtado; Philip R Wakeley; Marek J Slomka
New highly sensitive and accurate lyophilized real-time RT-PCR tests for early detection of avian influenza.
Avian diseases 2010;54(1 Suppl):686-9.
2010: Andrew J Pakstis; William C Speed; Rixun Fang; Fiona C L Hyland; Manohar R Furtado; Judith R Kidd; Kenneth K Kidd
SNPs for a universal individual identification panel.
Human genetics 2010;127(3):315-24.
2010: Henk C den Bakker; Craig A Cummings; Vania Ferreira; Paolo Vatta; Renato H Orsi; Lovorka Degoricija; Melissa Barker; Olga Petrauskene; Manohar R Furtado; Martin Wiedmann
Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss.
BMC genomics 2010;11():688.
2010: Craig A Cummings; Christina A Bormann Chung; Rixun Fang; Melissa Barker; Pius Brzoska; Phillip C Williamson; Jodi Beaudry; Molly Matthews; James M Schupp; David M Wagner; Dawn Birdsell; Amy J Vogler; Manohar R Furtado; Paul Keim; Bruce Budowle
Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.
Investigative genetics 2010;1(1):5.
2009: Miriam Goedbloed; Mark Vermeulen; Rixun N Fang; Maria Lembring; Andreas Wollstein; Kaye Ballantyne; Oscar Lao; Silke Brauer; Carmen Krüger; Lutz Roewer; Rüdiger Lessig; Rafal Ploski; Tadeusz Dobosz; Lotte Henke; Jürgen Henke; Manohar R Furtado; Manfred Kayser
Comprehensive mutation analysis of 17 Y-chromosomal short tandem repeat polymorphisms included in the AmpFlSTR Yfiler PCR amplification kit.
International journal of legal medicine 2009;123(6):471-82.
2009: Maxim G Brevnov; Hemant S Pawar; Janna Mundt; Lisa M Calandro; Manohar R Furtado; Jaiprakash Shewale
Developmental validation of the PrepFiler Forensic DNA Extraction Kit for extraction of genomic DNA from biological samples.
Journal of forensic sciences 2009;54(3):599-607.
2009: Maura Barbisin; Rixun Fang; Cristin E O'Shea; Lisa M Calandro; Manohar R Furtado; Jaiprakash Shewale
Developmental validation of the Quantifiler Duo DNA Quantification kit for simultaneous quantification of total human and human male DNA and detection of PCR inhibitors in biological samples.
Journal of forensic sciences 2009;54(2):305-19.
2007: C Phillips; R Fang; D Ballard; M Fondevila; C Harrison; F Hyland; E Musgrave-Brown; C Proff; E Ramos-Luis; B Sobrino; A Carracedo; Manohar R Furtado; D Syndercombe Court; P M Schneider
Evaluation of the Genplex SNP typing system and a 49plex forensic marker panel.
Forensic science international. Genetics 2007;1(2):180-5.
2006: Ivana Fantozzi; Oleksandr Platoshyn; Ada H Wong; Shen Zhang; Carmelle V Remillard; Manohar R Furtado; Olga V Petrauskene; Jason X-J Yuan
Bone morphogenetic protein-2 upregulates expression and function of voltage-gated K+ channels in human pulmonary artery smooth muscle cells.
American journal of physiology. Lung cellular and molecular physiology 2006;291(5):L993-1004.
2005: Matthew C Strain; Scott Letendre; Satish K Pillai; T Russell; Caroline C Ignacio; Huldrych Günthard; Benjamin Good; Davey M Smith; Steven Wolinsky; Manohar R Furtado; Jennifer Marquie-Beck; Janis Durelle; Igor Grant; Douglas D Richman; Thomas D Marcotte; J Allen McCutchan; Ronald J Ellis; Joseph Wong
Genetic composition of human immunodeficiency virus type 1 in cerebrospinal fluid and blood without treatment and during failing antiretroviral therapy.
Journal of virology 2005;79(3):1772-88.
2002: Victor Appay; Pokrath Hansasuta; Julian Sutton; Rachel D Schrier; Joseph Wong; Manohar R Furtado; Diane V Havlir; Steven Wolinsky; Andrew J McMichael; Douglas D Richman; Sarah L Rowland-Jones; Celsa A Spina
Persistent HIV-1-specific cellular responses despite prolonged therapeutic viral suppression.
AIDS (London, England) 2002;16(2):161-70.
2001: Karen E Willard-Gallo; Manohar R Furtado; Arsène Burny; Steven Wolinsky
Down-modulation of TCR/CD3 surface complexes after HIV-1 infection is associated with differential expression of the viral regulatory genes.
European journal of immunology 2001;31(4):969-79.
1999: Manohar R Furtado; D S Callaway; J P Phair; Kevin Kunstman; J L Stanton; C A Macken; A S Perelson; S M Wolinsky
Persistence of HIV-1 transcription in peripheral-blood mononuclear cells in patients receiving potent antiretroviral therapy.
The New England journal of medicine 1999;340(21):1614-22.
1996: Steven Wolinsky; B T Korber; Avidan U Neumann; M Daniels; Kevin Kunstman; A J Whetsell; Manohar R Furtado; Yunzhen Cao; David D Ho; J T Safrit
Adaptive evolution of human immunodeficiency virus-type 1 during the natural course of infection.
Science (New York, N.Y.) 1996;272(5261):537-42.
1996: C F Manohar; Helen R Salwen; Manohar R Furtado; Susan Cohn
Up-regulation of HOXC6, HOXD1, and HOXD8 homeobox gene expression in human neuroblastoma cells following chemical induction of differentiation.
Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine 1996;17(1):34-47.
1995: C F Manohar; Manohar R Furtado
Mutational analysis of the adenovirus E2-early promoter in fission yeast Schizosaccharomyces pombe.
Biochemistry and molecular biology international 1995;37(4):653-63.
1995: Manohar R Furtado; L A Kingsley; Steven Wolinsky
Changes in the viral mRNA expression pattern correlate with a rapid rate of CD4+ T-cell number decline in human immunodeficiency virus type 1-infected individuals.
Journal of virology 1995;69(4):2092-2100.
1994: B T Korber; Kevin Kunstman; Bruce K Patterson; Manohar R Furtado; M M McEvilly; R Levy; Steven Wolinsky
Genetic differences between blood- and brain-derived viral sequences from human immunodeficiency virus type 1-infected patients: evidence of conserved elements in the V3 region of the envelope protein of brain-derived sequences.
Journal of virology 1994;68(11):7467-81.
1994: G D Ghadge; P Malhotra; Manohar R Furtado; Ravi Dhar; Bayar Thimmapaya
In vitro analysis of virus-associated RNA I (VAI RNA): inhibition of the double-stranded RNA-activated protein kinase PKR by VAI RNA mutants correlates with the in vivo phenotype and the structural integrity of the central domain.
Journal of virology 1994;68(7):4137-51.
1994: C F Manohar; Helen R Salwen; Manohar R Furtado; Susan Cohn
Retinoic acid induced expression of homeobox genes in human neuroblastoma cells.
Progress in clinical and biological research 1994;385():229-35.
1993: C F Manohar; Manohar R Furtado; Helen R Salwen; Susan Cohn
Hox gene expression in differentiating human neuroblastoma cells.
Biochemistry and molecular biology international 1993;30(4):733-41.
1993: Bruce K Patterson; M Till; P Otto; Charles L Goolsby; Manohar R Furtado; L J McBride; Steven Wolinsky
Detection of HIV-1 DNA and messenger RNA in individual cells by PCR-driven in situ hybridization and flow cytometry.
Science (New York, N.Y.) 1993;260(5110):976-9.
1993: Manohar R Furtado; R Murphy; Steven Wolinsky
Quantification of human immunodeficiency virus type 1 tat mRNA as a marker for assessing the efficacy of antiretroviral therapy.
The Journal of infectious diseases 1993;167(1):213-6.
1992: B Korber; Steven Wolinsky; B Haynes; Kevin Kunstman; R Levy; Manohar R Furtado; P Otto; G Myers
HIV-1 intrapatient sequence diversity in the immunogenic V3 region.
AIDS research and human retroviruses 1992;8(8):1461-5.
1992: Steven Wolinsky; C M Wike; B T Korber; Cecelia Hutto; Wade P Parks; L L Rosenblum; Kevin Kunstman; Manohar R Furtado; J L Muñoz
Selective transmission of human immunodeficiency virus type-1 variants from mothers to infants.
Science (New York, N.Y.) 1992;255(5048):1134-7.
1991: Manohar R Furtado; R Balachandran; P Gupta; Steven Wolinsky
Analysis of alternatively spliced human immunodeficiency virus type-1 mRNA species, one of which encodes a novel tat-env fusion protein.
Virology 1991;185(1):258-70.
1991: M L Short; C F Manohar; Manohar R Furtado; G D Ghadge; S M Wolinsky; Bayar Thimmapaya; RA Jungmann
Nucleotide and derived amino-acid sequences of the CRE-binding proteins from rat C6 glioma and HeLa cells.
Nucleic acids research 1991;19(15):4290.
1989: Manohar R Furtado; S Subramanian; R A Bhat; D M Fowlkes; B Safer; B Thimmappaya
Functional dissection of adenovirus VAI RNA.
Journal of virology 1989;63(8):3423-34.
1989: R A Bhat; Manohar R Furtado; B Thimmappaya
Efficient expression of small RNA polymerase III genes from a novel simian virus 40 vector and their effect on viral gene expression.
Nucleic acids research 1989;17(3):1159-76.