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Martin Aryee

Research Profile

Physiology

Anatomy

Concepts & Ideas

Genes & Molecular Sequences

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Epigenomics

Disorders

Prostatic Neoplasms

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Mouse

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Publications

TOP 3
Jerry Guintivano; Martin Aryee; Z Kaminsky
A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression.
Yun Liu; Leonid Padyukov; Lovisa Reinius; Marcus Ronninger; Arni Runarsson; Annika Scheynius; Klementy Shchetynsky; Margaret Taub; Nathalie Acevedo; Lars Alfredsson; Martin Aryee; Tomas J Ekström; MARGARET D FALLIN; Espen Hesselberg; Juha Kere; Lars Klareskog; Andrew P Feinberg
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Martin Aryee; G Steven Bova; Julia C Engelmann; David Esopi; Robert H Getzenberg; Meltem Gurel; Michael C Haffner; Rafael A Irizarry; William B Isaacs; Wennuan Liu; Jun Luo; William G Nelson; Philipp Nuhn; Jianfeng Xu; Srinivasan Yegnasubramanian
DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases.

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All Publications

2013: Jerry Guintivano; Martin Aryee; Z Kaminsky
A cell epigenotype specific model for the correction of brain cellular heterogeneity bias and its application to age, brain region and major depression.
Epigenetics : official journal of the DNA Methylation Society 2013;8(3):290-302.
2013: Yun Liu; Leonid Padyukov; Lovisa Reinius; Marcus Ronninger; Arni Runarsson; Annika Scheynius; Klementy Shchetynsky; Margaret Taub; Nathalie Acevedo; Lars Alfredsson; Martin Aryee; Tomas J Ekström; MARGARET D FALLIN; Espen Hesselberg; Juha Kere; Lars Klareskog; Andrew P Feinberg
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
Nature biotechnology 2013;31(2):142-7.
2013: Martin Aryee; G Steven Bova; Julia C Engelmann; David Esopi; Robert H Getzenberg; Meltem Gurel; Michael C Haffner; Rafael A Irizarry; William B Isaacs; Wennuan Liu; Jun Luo; William G Nelson; Philipp Nuhn; Jianfeng Xu; Srinivasan Yegnasubramanian
DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases.
Science translational medicine 2013;5(169):169ra10.
2012: Brian R Herb; Rafael A Irizarry; Benjamin Langmead; Florian Wolschin; Gro V Amdam; Martin Aryee; Kasper Daniel Hansen; Andrew P Feinberg
Reversible switching between epigenetic states in honeybee behavioral subcastes.
Nature neuroscience 2012;15(10):1371-3.
2012: Hariharan Easwaran; Sarah E Johnstone; Patrick Joyce; William Matsui; Tim Mosbruger; Joyce E Ohm; Leander Van Neste; Qiuju Wang; Dan Weisenberger; Srinivasan Yegnasubramanian; Jingchun Zhu; NITA AHUJA; Martin Aryee; Eric Collisson; Stephen B Baylin
A DNA hypermethylation module for the stem/progenitor cell signature of cancer.
Genome research 2012;22(5):837-49.
2012: Hwajin Lee; Carolina Montano; Rakel Tryggvadottir; Frank R Witter; Andrew P Feinberg; Jason I Feinberg; Lynn Rose Goldman; Julie B Herbstman; Rafael A Irizarry; Andrew E Jaffe; Martin Aryee; Shannon Brown; MARGARET D FALLIN
DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth.
International journal of epidemiology 2012;41(1):188-99.
2012: Sarven Sabunciyan; Maree J Webster; Robert H Yolken; Martin Aryee; Andrew P Feinberg; Rafael A Irizarry; Walter E Kaufman; Andree Lessard; Peter Murakami; James B Potash; Michael Rongione
Genome-wide DNA methylation scan in major depressive disorder.
PloS one 2012;7(4):e34451.
2011: Kitai Kim; M William Lensch; Hu Li; Yuin-Han Loh; Kitwa Ng; Juli Unternaehrer; Rui Zhao; Martin Aryee; Patrick Cahan; James J Collins; Akiko Doi; Andrew P Feinberg; Hongguang Huo; George Q Daley
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells.
Nature biotechnology 2011;29(12):1117-9.
2011: Richard S Lee; Timothy H Moran; Peter Murakami; Martin Aryee; Andrew P Feinberg; Brian Herb; Yuqing Huo; Michael Rongione; Fayaz Seifuddin; Kellie L K Tamashiro; James B Potash
Adaptation of the CHARM DNA methylation platform for the rat genome reveals novel brain region-specific differences.
Epigenetics : official journal of the DNA Methylation Society 2011;6(11):1378-90.
2011: Cheryl M Koh; Bora Gurel; Siobhan Sutcliffe; Martin Aryee; Denise Schultz; Tsuyoshi Iwata; Motohide Uemura; Karen I Zeller; Uzoma Anele; Qizhi Zheng; Jessica L Hicks; William G Nelson; Chi Dang; Srinivasan Yegnasubramanian; Angelo M DeMarzo
Alterations in nucleolar structure and gene expression programs in prostatic neoplasia are driven by the MYC oncogene.
The American journal of pathology 2011;178(4):1824-34.
2011: Srinivasan Yegnasubramanian; Qizhi Zheng; Zhijin Wu; Martin Aryee; Raghav Badrinath; Benilton Carvalho; Angelo M DeMarzo; David Esopi; Michael C Haffner; Tony L He; Rafael A Irizarry; James D Morgan; William G Nelson
Chromosome-wide mapping of DNA methylation patterns in normal and malignant prostate cells reveals pervasive methylation of gene-associated and conserved intergenic sequences.
BMC genomics 2011;12():313.
2010: Zhijin Wu; Martin Aryee
Subset quantile normalization using negative control features.
Journal of computational biology : a journal of computational molecular cell biology 2010;17(10):1385-95.
2010: Hong Ji; Lauren I R Ehrlich; Jun Seita; Peter Murakami; Akiko Doi; Paul Lindau; Hwajin Lee; Martin Aryee; Rafael A Irizarry; Kitai Kim; Derrick J Rossi; Matthew A Inlay; Thomas Serwold; Holger Karsunky; Lena Ho; George Q Daley; Irving L Weissman; Andrew P Feinberg
Comprehensive methylome map of lineage commitment from haematopoietic progenitors.
Nature 2010;467(7313):338-42.
2010: K Kim; A Doi; Bo Wen; K Ng; R Zhao; Patrick Cahan; Jonghwan Kim; Martin Aryee; Hongxiu Ji; L I R Ehrlich; A Yabuuchi; A Takeuchi; K C Cunniff; H Hongguang; S McKinney-Freeman; O Naveiras; T J Yoon; Rafael A Irizarry; N Jung; J Seita; J Hanna; P Murakami; Rudolf Jaenisch; R Weissleder; S H Orkin; I L Weissman; Andrew P Feinberg; George Q Daley
Epigenetic memory in induced pluripotent stem cells.
Nature 2010;467(7313):285-90.
2010: Andrew P Feinberg; Rafael A Irizarry; Delphine Fradin; Martin Aryee; Peter Murakami; Thor Aspelund; Gudny Eiriksdottir; Tamara B Harris; Lenore Launer; Vilmundur Gudnason; MARGARET D FALLIN
Personalized epigenomic signatures that are stable over time and covary with body mass index.
Science translational medicine 2010;2(49):49ra67.
2010: Michael C Haffner; Martin Aryee; Antoun Toubaji; David M Esopi; Roula Albadine; Bora Gurel; William B Isaacs; G Steven Bova; Wennuan Liu; Jianfeng Xu; Alan K Meeker; George Netto; Angelo M DeMarzo; William G Nelson; Srinivasan Yegnasubramanian
Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements.
Nature genetics 2010;42(8):668-75.
2009: Akiko Doi; In-Hyun Park; Bo Wen; Peter Murakami; Martin Aryee; Rafael A Irizarry; Brian Herb; Christine Ladd-Acosta; Junsung Rho; Sabine Loewer; Justine Miller; Thorsten Schlaeger; George Q Daley; Andrew P Feinberg
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts.
Nature genetics 2009;41(12):1350-3.
2009: Martin Aryee; José A Gutiérrez-Pabello; Igor Kramnik; Tapabrata Maiti; John Quackenbush
An improved empirical bayes approach to estimating differential gene expression in microarray time-course data: BETR (Bayesian Estimation of Temporal Regulation).
BMC bioinformatics 2009;10():409.
2008: Martin Aryee; John Quackenbush
An optimized predictive strategy for interactome mapping.
Journal of proteome research 2008;7(9):4089-94.