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Alasdair Ivens

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Genes & Molecular Sequences

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Oligonucleotide Array Sequence Analysis

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TOP 3
Madeline J Stone; John Wain; Theresa Feltwell; Alasdair Ivens; Angela M Kearns; Kathleen B Bamford
Harnessing the genome: development of a hierarchical typing scheme for meticillin-resistant Staphylococcus aureus.
Vito Ricci; John Wain; Maria Fookes; Alasdair Ivens; Gemma C Langridge; Nick Loman; Mark Pallen; Laura J V Piddock
The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella.
Tom C Freeman; Ramiro Alberio; Alan L Archibald; J Kenneth Baillie; Mark W Barnett; Dario Beraldi; David Dorward; Alison Downing; Lynsey Fairbairn; Alasdair Ivens; Ronan Kapetanovic; Sobia Raza; Andrew I Su; Kim M Summers; Andru Tomoiu; Christopher K Tuggle; Chunlei Wu; David A Hume
A gene expression atlas of the domestic pig.

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All Publications

2013: Madeline J Stone; John Wain; Theresa Feltwell; Alasdair Ivens; Angela M Kearns; Kathleen B Bamford
Harnessing the genome: development of a hierarchical typing scheme for meticillin-resistant Staphylococcus aureus.
Journal of medical microbiology 2013;62(Pt 1):36-45.
2012: Vito Ricci; John Wain; Maria Fookes; Alasdair Ivens; Gemma C Langridge; Nick Loman; Mark Pallen; Laura J V Piddock
The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella.
The Journal of antimicrobial chemotherapy 2012;67(3):589-99.
2012: Tom C Freeman; Ramiro Alberio; Alan L Archibald; J Kenneth Baillie; Mark W Barnett; Dario Beraldi; David Dorward; Alison Downing; Lynsey Fairbairn; Alasdair Ivens; Ronan Kapetanovic; Sobia Raza; Andrew I Su; Kim M Summers; Andru Tomoiu; Christopher K Tuggle; Chunlei Wu; David A Hume
A gene expression atlas of the domestic pig.
BMC biology 2012;10():90.
2011: Christopher Sugden; Susan Ross; Sarah J Annesley; Christian Cole; Gareth Bloomfield; Alasdair Ivens; Jason Skelton; Paul R Fisher; Geoffrey Barton; Jeffrey G Williams
A Dictyostelium SH2 adaptor protein required for correct DIF-1 signaling and pattern formation.
Developmental biology 2011;353(2):290-301.
2011: David M Greene; Gareth Bloomfield; Jason Skelton; Alasdair Ivens; Catherine J Pears
Targets downstream of Cdk8 in Dictyostelium development.
BMC developmental biology 2011;11():2.
2010: Gareth Bloomfield; Jason Skelton; Alasdair Ivens; Yoshimasa Tanaka; Robert R Kay
Sex determination in the social amoeba Dictyostelium discoideum.
Science (New York, N.Y.) 2010;330(6010):1533-6.
2010: John Ellis; Duncan Sinclair; David Morrison; Sarwat Al-Qassab; Kevin Springett; Alasdair Ivens
Microarray analyses of mouse responses to infection by Neospora caninum identifies disease associated cellular pathways in the host response.
Molecular and biochemical parasitology 2010;174(2):117-27.
2010: Ricardo DeMarco; William Mathieson; Sophia J Manuel; Gary P Dillon; Rachel S Curwen; Peter Ashton; Alasdair Ivens; Matthew Berriman; Sergio Verjovski-Almeida; R Alan Wilson
Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts.
Genome research 2010;20(8):1112-21.
2010: Christopher Sugden; Susan Ross; Gareth Bloomfield; Alasdair Ivens; Jason Skelton; Annette Mueller-Taubenberger; Jeffrey G Williams
Two novel Src homology 2 domain proteins interact to regulate dictyostelium gene expression during growth and early development.
The Journal of biological chemistry 2010;285(30):22927-35.
2010: Fiona Walsh; Niamh M Cooke; Stephen G Smith; Gary P Moran; Fiona J Cooke; Alasdair Ivens; John Wain; Thomas R Rogers
Comparison of two DNA microarrays for detection of plasmid-mediated antimicrobial resistance and virulence factor genes in clinical isolates of Enterobacteriaceae and non-Enterobacteriaceae.
International journal of antimicrobial agents 2010;35(6):593-8.
2010: Yoko Yamada; Robert R Kay; Gareth Bloomfield; Susan Ross; Alasdair Ivens; Jeffrey G Williams
A new Dictyostelium prestalk cell sub-type.
Developmental biology 2010;339(2):390-7.
2010: Andrew M Bailey; Alasdair Ivens; Rob Kingsley; Jennifer L Cottell; John Wain; Laura J V Piddock
RamA, a member of the AraC/XylS family, influences both virulence and efflux in Salmonella enterica serovar Typhimurium.
Journal of bacteriology 2010;192(6):1607-16.
2009: Andrew M Bailey; Chrystala Constantinidou; Alasdair Ivens; Mark I Garvey; Mark A Webber; Nick G Coldham; Jon Hobman; John Wain; Martin J Woodward; Laura J V Piddock
Exposure of Escherichia coli and Salmonella enterica serovar Typhimurium to triclosan induces a species-specific response, including drug detoxification.
The Journal of antimicrobial chemotherapy 2009;64(5):973-85.
2009: Zhensheng Pan; Ben Carter; Javier Núñez-García; manal abu oun; María Fookes; Alasdair Ivens; Martin J Woodward; Muna F Anjum
Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport.
Microbiology (Reading, England) 2009;155(Pt 10):3200-13.
2009: Zhiru Li; Aisling S Dugan; Gareth Bloomfield; Jason Skelton; Alasdair Ivens; Vicki Losick; Ralph R Isberg
The amoebal MAP kinase response to Legionella pneumophila is regulated by DupA.
Cell host & microbe 2009;6(3):253-67.
2009: Matthew Berriman; Brian J Haas; Philip T LoVerde; R Alan Wilson; Gary P Dillon; Gustavo C Cerqueira; Susan T Mashiyama; Bissan Al-Lazikani; Luiza F Andrade; Peter Ashton; Martin A Aslett; Daniella C Bartholomeu; Gaelle Blandin; Conor R Caffrey; Avril Coghlan; Richard Coulson; Tim A Day; Art Delcher; Ricardo DeMarco; Appolinaire Djikeng; Tina Eyre; John A Gamble; Elodie Ghedin; Yong Gu; Christiane Hertz-Fowler; Hirohisha Hirai; Yuriko Hirai; Robin Houston; Alasdair Ivens; David A Johnston; Daniela Lacerda; Camila D Macedo; Paul McVeigh; Zemin Ning; Guilherme Oliveira; John P Overington; Julian Parkhill; Mihaela Pertea; Raymond J Pierce; Anna V Protasio; Michael A Quail; Marie-Adèle Rajandream; Jane Rogers; Mohammed Sajid; Steven L Salzberg; Mario Stanke; Adrian R Tivey; Owen R White; David L Williams; Jennifer Wortman; Wenjie Wu; Mostafa Zamanian; Adhemar Zerlotini; Claire M Fraser-Liggett; Barclay G Barrell; Najib M El-Sayed
The genome of the blood fluke Schistosoma mansoni.
Nature 2009;460(7253):352-8.
2009: Mark A Webber; Andrew M Bailey; Jessica M A Blair; Eirwen Morgan; Mark P Stevens; Jay C D Hinton; Alasdair Ivens; John Wain; Laura J V Piddock
The global consequence of disruption of the AcrAB-TolC efflux pump in Salmonella enterica includes reduced expression of SPI-1 and other attributes required to infect the host.
Journal of bacteriology 2009;191(13):4276-85.
2009: Michael Duffy; Timothy J Byrne; Celine Carret; Alasdair Ivens; Graham V Brown
Ectopic recombination of a malaria var gene during mitosis associated with an altered var switch rate.
Journal of molecular biology 2009;389(3):453-69.
2009: S Al-Qassab; Michael Reichel; Alasdair Ivens; John T Ellis
Genetic diversity amongst isolates of Neospora caninum, and the development of a multiplex assay for the detection of distinct strains.
Molecular and cellular probes 2009;23(3-4):132-9.
2009: Christopher J Tonkin; Céline K Carret; Manoj T Duraisingh; Till S Voss; Stuart A Ralph; Mirja Hommel; Michael Duffy; Liliana Mancio da Silva; Artur Scherf; Alasdair Ivens; Terence P Speed; James G Beeson; Alan F Cowman
Sir2 paralogues cooperate to regulate virulence genes and antigenic variation in Plasmodium falciparum.
PLoS biology 2009;7(4):e84.
2009: Laura Betancor; Lucia Yim; Maria Fookes; Araci Martinez; Nicholas R Thomson; Alasdair Ivens; Sarah Peters; Clare Bryant; Gabriela Algorta; SAMUEL KARIUKI; Felipe Schelotto; Duncan J Maskell; Gordon Dougan; José A Chabalgoity
Genomic and phenotypic variation in epidemic-spanning Salmonella enterica serovar Enteritidis isolates.
BMC microbiology 2009;9():237.
2009: Jennifer M Fitzpatrick; Emily Peak; Samirah Perally; Iain W Chalmers; John Barrett; Timothy P Yoshino; Alasdair Ivens; Karl F Hoffmann
Anti-schistosomal intervention targets identified by lifecycle transcriptomic analyses.
PLoS neglected tropical diseases 2009;3(11):e543.
2009: Sarah Kabani; Katelyn Fenn; Alan Ross; Alasdair Ivens; Terry K Smith; Peter Ghazal; Keith Matthews
Genome-wide expression profiling of in vivo-derived bloodstream parasite stages and dynamic analysis of mRNA alterations during synchronous differentiation in Trypanosoma brucei.
BMC genomics 2009;10():427.
2009: Cheeseman Ian; Natalia Gomez-Escobar; Celine K Carret; Alasdair Ivens; Lindsay B Stewart; Kevin K A Tetteh; David J Conway
Gene copy number variation throughout the Plasmodium falciparum genome.
BMC genomics 2009;10():353.
2009: Daniel P Depledge; Krystal J Evans; Alasdair Ivens; Naveed Aziz; Asher Maroof; Paul M Kaye; Deborah Smith
Comparative expression profiling of Leishmania: modulation in gene expression between species and in different host genetic backgrounds.
PLoS neglected tropical diseases 2009;3(7):e476.
2008: Fiona J Cooke; Derek Brown; Maria Fookes; Derek Pickard; Alasdair Ivens; John Wain; Mark Roberts; Robert Kingsley; Nicholas R Thomson; Gordon Dougan
Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104.
Journal of bacteriology 2008;190(24):8155-62.
2008: A Pain; U Böhme; A E Berry; K Mungall; R D Finn; Andrew Jackson; T Mourier; J Mistry; E M Pasini; M A Aslett; S Balasubrammaniam; K Borgwardt; K Brooks; C Carret; T J Carver; I Cherevach; T Chillingworth; T G Clark; Mary R Galinski; N Hall; D Harper; D Harris; H Hauser; Alasdair Ivens; C S Janssen; T Keane; N Larke; S Lapp; Matthias Marti; S Moule; I M Meyer; D Ormond; N Peters; M Sanders; Steven Sanders; T J Sargeant; M Simmonds; F Smith; R Squares; S Thurston; A R Tivey; D Walker; B White; E Zuiderwijk; C Churcher; M A Quail; A F Cowman; C M R Turner; M A Rajandream; C H M Kocken; A W Thomas; C I Newbold; B G Barrell; M Berriman
The genome of the simian and human malaria parasite Plasmodium knowlesi.
Nature 2008;455(7214):799-803.
2008: Louise A Ryan; Elizabeth M Hoey; Alan Trudgett; Ian Fairweather; Marc Fuchs; Mark W Robinson; Emma Chambers; David J Timson; Eimear Ryan; Theresa Feltwell; Alasdair Ivens; Geoffrey Bentley; David Johnston
Fasciola hepatica expresses multiple alpha- and beta-tubulin isotypes.
Molecular and biochemical parasitology 2008;159(1):73-8.
2008: María Galardi-Castilla; Barbara Pergolizzi; Gareth Bloomfield; Jason Skelton; Alasdair Ivens; Robert R Kay; Salvatore Bozzaro; Leandro Sastre
SrfB, a member of the Serum Response Factor family of transcription factors, regulates starvation response and early development in Dictyostelium.
Developmental biology 2008;316(2):260-74.
2008: Tobias Mourier; Celine Carret; Sue Kyes; Zoe Christodoulou; Paul P Gardner; Daniel C Jeffares; Robert Pinches; Bart Barrell; Matt Berriman; Sam Griffiths-Jones; Alasdair Ivens; Chris Newbold; Arnab Pain
Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum.
Genome research 2008;18(2):281-92.
2008: Hongying Jiang; Ming Yi; Jianbing Mu; Louie Zhang; Alasdair Ivens; Leszek J Klimczak; Yentram Huyen; Robert M Stephens; Xin-zhuan Su
Detection of genome-wide polymorphisms in the AT-rich Plasmodium falciparum genome using a high-density microarray.
BMC genomics 2008;9():398.
2008: Sergio Carilla-Latorre; Javier Calvo-Garrido; Gareth Bloomfield; Jason Skelton; Robert R Kay; Alasdair Ivens; Jose L Martinez; Ricardo Escalante
Dictyostelium transcriptional responses to Pseudomonas aeruginosa: common and specific effects from PAO1 and PA14 strains.
BMC microbiology 2008;8():109.
2008: Alessio Sillo; Gareth Bloomfield; Alessandra Balest; Alessandra Balbo; Barbara Pergolizzi; Barbara Peracino; Jason Skelton; Alasdair Ivens; Salvatore Bozzaro
Genome-wide transcriptional changes induced by phagocytosis or growth on bacteria in Dictyostelium.
BMC genomics 2008;9():291.
2008: Gary P Dillon; Theresa Feltwell; Jason Skelton; Patricia S Coulson; R Alan Wilson; Alasdair Ivens
Altered patterns of gene expression underlying the enhanced immunogenicity of radiation-attenuated schistosomes.
PLoS neglected tropical diseases 2008;2(5):e240.
2008: Gareth Bloomfield; Yoshimasa Tanaka; Jason Skelton; Alasdair Ivens; Robert R Kay
Widespread duplications in the genomes of laboratory stocks of Dictyostelium discoideum.
Genome biology 2008;9(4):R75.
2008: Matloob Qureshi; Alasdair Ivens
A software framework for microarray and gene expression object model (MAGE-OM) array design annotation.
BMC genomics 2008;9():133.
2007: Alfred Cortés; Celine Carret; Osamu Kaneko; Brian Y S Yim Lim; Alasdair Ivens; Anthony A Holder
Epigenetic silencing of Plasmodium falciparum genes linked to erythrocyte invasion.
PLoS pathogens 2007;3(8):e107.
2007: Fiona J Cooke; John Wain; Maria Fookes; Alasdair Ivens; Nicholas Thomson; Derek Brown; E John Threlfall; George Gunn; Geoffrey Foster; Gordon Dougan
Prophage sequences defining hot spots of genome variation in Salmonella enterica serovar Typhimurium can be used to discriminate between field isolates.
Journal of clinical microbiology 2007;45(8):2590-8.
2007: Christopher S Peacock; kathy seeger; David Harris; Lee Murphy; Jeronimo C Ruiz; Michael A Quail; Nick Peters; Ellen Adlem; Adrian Tivey; Martin Aslett; Arnaud Kerhornou; Alasdair Ivens; Audrey Fraser; Marie-Adele Rajandream; Tim Carver; Halina Norbertczak; Tracey Chillingworth; Zahra Hance; Kay Jagels; Sharon Moule; Doug Ormond; Simon Rutter; Rob Squares; Sally Whitehead; Ester Rabbinowitsch; Claire Arrowsmith; Brian White; Scott Thurston; Frédéric Bringaud; Sandra L Baldauf; Adam Faulconbridge; Daniel Jeffares; Daniel P Depledge; Samuel O Oyola; James D Hilley; Loislene O Brito; Luiz R O Tosi; Barclay Barrell; Angela Cruz; Jeremy C Mottram; Deborah Smith; Matthew Berriman
Comparative genomic analysis of three Leishmania species that cause diverse human disease.
Nature genetics 2007;39(7):839-47.
2007: Mohammed Sebaihia; Michael W Peck; Nigel P Minton; Nicholas R Thomson; Matthew T G Holden; Wilfrid J Mitchell; Andrew T Carter; Stephen D Bentley; David R Mason; Lisa Crossman; Catherine Paul; Alasdair Ivens; Marjon H J Wells-Bennik; Ian Davis; Ana M Cerdeño-Tárraga; Carol Churcher; Michael A Quail; Tracey Chillingworth; Theresa Feltwell; Audrey Fraser; Ian Goodhead; Zahra Hance; Kay Jagels; Natasha Larke; Mark Maddison; Sharon Moule; Karen Mungall; Halina Norbertczak; Ester Rabbinowitsch; Mandy Sanders; Mark Simmonds; Brian White; Sally Whithead; Julian Parkhill
Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes.
Genome research 2007;17(7):1082-92.
2007: Srabasti J Chakravorty; Celine Carret; Gerard B Nash; Alasdair Ivens; Tadge Szestak; Alister G Craig
Altered phenotype and gene transcription in endothelial cells, induced by Plasmodium falciparum-infected red blood cells: pathogenic or protective?
International journal for parasitology 2007;37(8-9):975-87.
2007: King-Hwa Ling; Marie-Adele Rajandream; Pierre Rivailler; Alasdair Ivens; Soon-Joo Yap; Alda M B N Madeira; Karen Mungall; Karen Billington; Wai-Yan Yee; Alan T Bankier; Fionnadh Carroll; Alan M Durham; Nicholas Peters; Shu-San Loo; Mohd Noor Mat Isa; Jeniffer Novaes; Michael Quail; Rozita Rosli; Mariana Nor Shamsudin; Tiago Sobreira; Adrian R Tivey; Siew-Fun Wai; Sarah White; Xikun Wu; Arnaud Kerhornou; Damer Blake; Rahmah Mohamed; Martin Shirley; Arthur Gruber; Matthew Berriman; Fiona Tomley; Paul H Dear; Kiew-Lian Wan
Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization.
Genome research 2007;17(3):311-9.
2007: Ioannis Serafimidis; Gareth Bloomfield; Jason Skelton; Alasdair Ivens; Robert R Kay
A new environmentally resistant cell type from Dictyostelium.
Microbiology (Reading, England) 2007;153(Pt 2):619-30.
2007: Lana Strmecki; Gareth Bloomfield; Tsuyoshi Araki; Emma Dalton; Jason Skelton; Christina Schilde; Adrian J Harwood; Jeffrey G Williams; Alasdair Ivens; Catherine J Pears
Proteomic and microarray analyses of the Dictyostelium Zak1-GSK-3 signaling pathway reveal a role in early development.
Eukaryotic cell 2007;6(2):245-52.
2007: Marie Doyle; Maria Fookes; Alasdair Ivens; Michael Mangan; John Wain; Charles J Dorman
An H-NS-like stealth protein aids horizontal DNA transmission in bacteria.
Science (New York, N.Y.) 2007;315(5809):251-2.
2007: Carol Loscher; Karsten Hokamp; Paul F Kenna; Alasdair Ivens; Peter Humphries; Arpad Palfi; G Jane Farrar
Altered retinal microRNA expression profile in a mouse model of retinitis pigmentosa.
Genome biology 2007;8(11):R248.
2007: R Alan Wilson; Peter Ashton; Simon Braschi; Gary P Dillon; Matthew Berriman; Alasdair Ivens
'Oming in on schistosomes: prospects and limitations for post-genomics.
Trends in parasitology 2007;23(1):14-20.
2006: Rod Dillon; Alasdair Ivens; Carol Churcher; Nancy Holroyd; Michael A Quail; Matthew E Rogers; M Bento Soares; Maria F Bonaldo; Thomas L Casavant; Michael J Lehane; Paul A Bates
Analysis of ESTs from Lutzomyia longipalpis sand flies and their contribution toward understanding the insect-parasite relationship.
Genomics 2006;88(6):831-40.
2006: Jonathan R Chubb; Gareth Bloomfield; Qikai Xu; Markus Kaller; Alasdair Ivens; Jason Skelton; Bryan M Turner; Wolfgang Nellen; Gad Shaulsky; Robert R Kay; Wendy A Bickmore; Robert H Singer
Developmental timing in Dictyostelium is regulated by the Set1 histone methyltransferase.
Developmental biology 2006;292(2):519-32.
2006: Gary P Dillon; Theresa Feltwell; Jason P Skelton; Peter Ashton; Patricia S Coulson; Michael A Quail; Nefeli Nikolaidou-Katsaridou; R Alan Wilson; Alasdair Ivens
Microarray analysis identifies genes preferentially expressed in the lung schistosomulum of Schistosoma mansoni.
International journal for parasitology 2006;36(1):1-8.
2005: Muna F Anjum; Chris Marooney; Maria Fookes; Stephen Baker; Gordon Dougan; Alasdair Ivens; Martin J Woodward
Identification of core and variable components of the Salmonella enterica subspecies I genome by microarray.
Infection and immunity 2005;73(12):7894-905.
2005: Céline Karine Carret; Paul Horrocks; Bernard A Konfortov; Elizabeth A Winzeler; Matloob Qureshi; Chris Newbold; Alasdair Ivens
Microarray-based comparative genomic analyses of the human malaria parasite Plasmodium falciparum using Affymetrix arrays.
Molecular and biochemical parasitology 2005;144(2):177-86.
2005: Raymond J Pierce; Wenjie Wu; Hirohisa Hirai; Alasdair Ivens; Lee D Murphy; Christophe Noel; David A Johnston; François Artiguenave; Martin Adams; Jocelyne Cornette; Eric Viscogliosi; Monique Capron; Guillaume Balavoine
Evidence for a dispersed Hox gene cluster in the platyhelminth parasite Schistosoma mansoni.
Molecular biology and evolution 2005;22(12):2491-503.
2005: Alasdair Ivens; Christopher S Peacock; Elizabeth A Worthey; Lee Murphy; Gautam Aggarwal; Matthew Berriman; Ellen Sisk; Marie-Adele Rajandream; Ellen Adlem; Rita Aert; Atashi Anupama; Zina Apostolou; Philip Attipoe; Nathalie Bason; Christopher Bauser; Alfred Beck; Stephen M Beverley; Gabriella Bianchettin; Katja Borzym; Gordana Bothe; Carlo V Bruschi; Matt Collins; Eithon Cadag; Laura Ciarloni; Christine Clayton; Richard M R Coulson; Ann Cronin; Angela Cruz; Robert M Davies; Javier De Gaudenzi; Deborah E Dobson; Andreas Duesterhoeft; Gholam Fazelina; Nigel Fosker; Alberto Carlos Frasch; Audrey Fraser; Monika Fuchs; Claudia Gabel; Arlette Goble; André Goffeau; David Harris; Christiane Hertz-Fowler; Helmut Hilbert; David Horn; Yiting Huang; Sven Klages; Andrew Knights; Michael Kube; Natasha Larke; Lyudmila Litvin; Angela Lord; Tin Louie; Marco Marra; David Masuy; Keith Matthews; Shulamit Michaeli; Jeremy C Mottram; Silke Müller-Auer; Heather Munden; Siri Nelson; Halina Norbertczak; Karen Oliver; Susan O'neil; Martin Pentony; Thomas M Pohl; Claire Price; Bénédicte Purnelle; Michael A Quail; Ester Rabbinowitsch; Richard Reinhardt; Michael Rieger; Joel Rinta; Johan Robben; Laura Robertson; Jeronimo C Ruiz; Simon Rutter; David Saunders; Melanie Schäfer; Jacquie Schein; David C Schwartz; kathy seeger; Amber Seyler; Sarah Sharp; Heesun Shin; Dhileep Sivam; Rob Squares; Steve Squares; Valentina Tosato; Christy Vogt; Guido Volckaert; Rolf Wambutt; Tim Warren; Holger Wedler; John Woodward; Shiguo Zhou; Wolfgang Zimmermann; Deborah Smith; Jenefer M Blackwell; Kenneth D Stuart; Bart Barrell; Peter J Myler
The genome of the kinetoplastid parasite, Leishmania major.
Science (New York, N.Y.) 2005;309(5733):436-42.
2005: Matthew Berriman; Elodie Ghedin; Christiane Hertz-Fowler; Gaëlle Blandin; Hubert Renauld; Daniella C Bartholomeu; Nicola J Lennard; Elisabet Caler; Nancy E Hamlin; Brian Haas; Ulrike Böhme; Linda Hannick; Martin A Aslett; Joshua Shallom; Lucio Marcello; Lihua Hou; Bill Wickstead; U Cecilia M Alsmark; Claire Arrowsmith; Rebecca J Atkin; Andrew J Barron; Frederic Bringaud; Karen Brooks; Mark Carrington; Inna Cherevach; Tracey-Jane Chillingworth; Carol Churcher; Louise N Clark; Craig H Corton; Ann Cronin; Rob M Davies; Jonathon Doggett; Appolinaire Djikeng; Tamara Feldblyum; Mark Field; Audrey Fraser; Ian Goodhead; Zahra Hance; David Harper; Barbara R Harris; Heidi Hauser; Jessica Hostetler; Alasdair Ivens; Kay Jagels; David Johnson; Justin Johnson; Kristine Jones; Arnaud Kerhornou; Hean Koo; Natasha Larke; Scott M Landfear; Christopher Larkin; Vanessa Leech; Alexandra Line; Angela Lord; Annette Macleod; Paul J Mooney; Sharon Moule; David M A Martin; Gareth W Morgan; Karen Mungall; Halina Norbertczak; Doug Ormond; Grace Pai; Chris S Peacock; Jeremy Peterson; Michael A Quail; Ester Rabbinowitsch; Marie-Adele Rajandream; Chris Reitter; Steven L Salzberg; Mandy Sanders; Seth Schobel; Sarah Sharp; Mark Simmonds; Anjana J Simpson; Luke Tallon; C Michael R Turner; Andrew Tait; Adrian R Tivey; Susan Van Aken; Danielle Walker; David Wanless; Shiliang Wang; Brian White; Owen R White; Sally Whitehead; John Woodward; Jennifer Wortman; Mark D Adams; T Martin Embley; Keith Gull; Elisabetta Ullu; J David Barry; Alan H Fairlamb; Fred Opperdoes; Barclay G Barrell; John E Donelson; Neil Hall; Claire M Fraser-Liggett; Sara E Melville; Najib M El-Sayed
The genome of the African trypanosome Trypanosoma brucei.
Science (New York, N.Y.) 2005;309(5733):416-22.
2005: Najib M El-Sayed; Peter J Myler; Gaëlle Blandin; Matthew Berriman; Jonathan Crabtree; Gautam Aggarwal; Elisabet Caler; Hubert Renauld; Elizabeth A Worthey; Christiane Hertz-Fowler; Elodie Ghedin; Christopher Peacock; Daniella C Bartholomeu; Brian J Haas; Anh-Nhi Tran; Jennifer Wortman; U Cecilia M Alsmark; Samuel Angiuoli; Atashi Anupama; Jonathan Badger; Frederic Bringaud; Eithon Cadag; Jane M Carlton; Gustavo Cerqueira; Todd Creasy; Arthur L Delcher; Appolinaire Djikeng; T Martin Embley; Christopher Hauser; Alasdair Ivens; Sarah K Kummerfeld; Jose Pereira-Leal; Daniel Nilsson; Jeremy Peterson; Steven L Salzberg; Joshua Shallom; Joana Carneiro Da Silva; Jaideep Sundaram; Scott Westenberger; Owen R White; Sara E Melville; John E Donelson; Björn Andersson; Kenneth D Stuart; Neil Hall
Comparative genomics of trypanosomatid parasitic protozoa.
Science (New York, N.Y.) 2005;309(5733):404-9.
2005: Martin Aslett; Paul Mooney; Ellen Adlem; Matthew Berriman; Andrew Berry; Christiane Hertz-Fowler; Alasdair Ivens; Arnaud Kerhornou; Julian Parkhill; Chris S Peacock; Valerie Wood; Marie-Adele Rajandream; Bart Barrell; Adrian Tivey
Integration of tools and resources for display and analysis of genomic data for protozoan parasites.
International journal for parasitology 2005;35(5):481-93.
2005: Anne L Bishop; Stephen Baker; Sara Jenks; Maria Fookes; Peadar Ó Gaora; Derek Pickard; Muna F Anjum; Jeremy Farrar; Tran Tinh Hien; Alasdair Ivens; Gordon Dougan
Analysis of the hypervariable region of the Salmonella enterica genome associated with tRNA(leuX).
Journal of bacteriology 2005;187(7):2469-82.
2004: Shiguo Zhou; Andrew Kile; Erika Kvikstad; Michael Bechner; Jessica Severin; Dan Forrest; Rod Runnheim; Chris Churas; Thomas S Anantharaman; Peter J Myler; Christy Vogt; Alasdair Ivens; Kenneth Stuart; David C Schwartz
Shotgun optical mapping of the entire Leishmania major Friedlin genome.
Molecular and biochemical parasitology 2004;138(1):97-106.
2004: Renata Almeida; Brian J Gilmartin; Sharon H McCann; Alan Norrish; Alasdair Ivens; Daniel Lawson; Mark P Levick; Deborah Smith; Sabrina D Dyall; David Vetrie; Tom C Freeman; Richard M Coulson; Iracilda Sampaio; Horacio Schneider; Jenefer M Blackwell
Expression profiling of the Leishmania life cycle: cDNA arrays identify developmentally regulated genes present but not annotated in the genome.
Molecular and biochemical parasitology 2004;136(1):87-100.
2004: Nicholas Thomson; Stephen Baker; Derek Pickard; Maria Fookes; Muna F Anjum; Nancy Hamlin; John Wain; Deborah House; Zulfiqar A Bhutta; Kaman Chan; Stanley Falkow; Julian Parkhill; Martin Woodward; Alasdair Ivens; Gordon Dougan
The role of prophage-like elements in the diversity of Salmonella enterica serovars.
Journal of molecular biology 2004;339(2):279-300.
2004: Martin W Shirley; Alasdair Ivens; Arthur Gruber; Alda M B N Madeira; Kiew-Lian Wan; Paul H Dear; Fiona M Tomley
The Eimeria genome projects: a sequence of events.
Trends in parasitology 2004;20(5):199-201.
2004: Najib M El-Sayed; Daniella C Bartholomeu; Alasdair Ivens; David A Johnston; Philip T LoVerde
Advances in schistosome genomics.
Trends in parasitology 2004;20(4):154-7.
2004: Elodie Ghedin; Frédéric Bringaud; Jeremy Peterson; Peter J Myler; Matthew Berriman; Alasdair Ivens; Björn Andersson; Esteban Bontempi; Jonathan Eisen; Samuel V Angiuoli; David Wanless; Anna Von Arx; Lee Murphy; Nicola Lennard; Steven L Salzberg; Mark D Adams; Owen R White; Neil Hall; Kenneth Stuart; Claire M Fraser-Liggett; Najib M El-Sayed
Gene synteny and evolution of genome architecture in trypanosomatids.
Molecular and biochemical parasitology 2004;134(2):183-91.
2004: Christiane Hertz-Fowler; Chris S Peacock; Valerie Wood; Martin Aslett; Arnaud Kerhornou; Paul Mooney; Adrian Tivey; Matthew Berriman; Neil Hall; Kim Rutherford; Julian Parkhill; Alasdair Ivens; Marie-Adele Rajandream; Bart Barrell
GeneDB: a resource for prokaryotic and eukaryotic organisms.
Nucleic acids research 2004;32(Database issue):D339-43.
2003: Wen-Wei Zhang; Susana Mendez; Anirban Ghosh; Peter J Myler; Alasdair Ivens; Joachim Clos; David L Sacks; Greg Matlashewski
Comparison of the A2 gene locus in Leishmania donovani and Leishmania major and its control over cutaneous infection.
The Journal of biological chemistry 2003;278(37):35508-15.
2003: Alan T Bankier; Helen F Spriggs; Berthold Fartmann; Bernard A Konfortov; Martin Madera; Christine Vogel; Sarah A Teichmann; Alasdair Ivens; Paul H Dear
Integrated mapping, chromosomal sequencing and sequence analysis of Cryptosporidium parvum.
Genome research 2003;13(8):1787-99.
2003: Elizabeth A Worthey; Santiago Martinez-Calvillo; Achim Schnaufer; Gautam Aggarwal; Jason Cawthra; Gholam Fazelinia; Chris Fong; Guoliang Fu; Melissa Hassebrock; Greg Hixson; Alasdair Ivens; Patti Kiser; Felicia Marsolini; Erika Rickel; Erica Rickell; Reza Salavati; Ellen Sisk; Susan M Sunkin; Kenneth D Stuart; Peter J Myler
Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene.
Nucleic acids research 2003;31(14):4201-10.
2003: Claudia Copeland; Paul J Brindley; Oliver Heyers; Scott F Michael; David A Johnston; David L Williams; Alasdair Ivens; Bernd H Kalinna
Boudicca, a retrovirus-like long terminal repeat retrotransposon from the genome of the human blood fluke Schistosoma mansoni.
Journal of virology 2003;77(11):6153-66.
2002: Paul W Denny; Sharon Lewis; Jane E Tempero; David Goulding; Alasdair Ivens; Mark Field; Deborah Smith
Leishmania RAB7: characterisation of terminal endocytic stages in an intracellular parasite.
Molecular and biochemical parasitology 2002;123(2):105-13.
2002: Timothy H P Tan; Roland Pach; Anne Crausaz; Alasdair Ivens; André Schneider
tRNAs in Trypanosoma brucei: genomic organization, expression, and mitochondrial import.
Molecular and cellular biology 2002;22(11):3707-17.
2002: Michal M Siman-Tov; Alasdair Ivens; Charles L Jaffe
Molecular cloning and characterization of two new isoforms of the protein kinase A catalytic subunit from the human parasite Leishmania.
Gene 2002;288(1-2):65-75.
2002: Renata Almeida; Alan Norrish; Mark P Levick; David Vetrie; Tom Freeman; Jaak Vilo; Alasdair Ivens; Uta G Lange; Carmel B Stober; Sharon McCann; Jenefer M Blackwell
From genomes to vaccines: Leishmania as a model.
Philosophical transactions of the Royal Society of London. Series B, Biological sciences 2002;357(1417):5-11.
2001: Peter J Myler; Stephen M Beverley; Angela Cruz; Deborah E Dobson; Alasdair Ivens; Paul D McDonagh; Madhubala rentala; Santiago Martinez-Calvillo; Jeronimo C Ruiz; A Saxena; Ellen Sisk; Susan M Sunkin; Elizabeth A Worthey; Shaofeng Yan; Kenneth D Stuart
The Leishmania genome project: new insights into gene organization and function.
Medical microbiology and immunology 2001;190(1-2):9-12.
2001: Valentina Tosato; L Ciarloni; Alasdair Ivens; Marie-Adele Rajandream; Bart Barrell; Carlo V Bruschi
Secondary DNA structure analysis of the coding strand switch regions of five Leishmania major Friedlin chromosomes.
Current genetics 2001;40(3):186-94.
2001: Matthew Berriman; Martin Aslett; Neil Hall; Alasdair Ivens
Parasites are GO.
Trends in parasitology 2001;17(10):463-4.
2001: M M Siman-Tov; Alasdair Ivens; Charles L Jaffe
Identification and cloning of Lmairk, a member of the Aurora/Ipl1p protein kinase family, from the human protozoan parasite Leishmania.
Biochimica et biophysica acta 2001;1519(3):241-5.
2001: Wim Degrave; S Melville; Alasdair Ivens; Martin Aslett
Parasite genome initiatives.
International journal for parasitology 2001;31(5-6):532-6.
2001: Valerie Wood; Kim Rutherford; Alasdair Ivens; Marie-Adele Rajandream; Bart Barrell
A re-annotation of the Saccharomyces cerevisiae genome.
Comparative and functional genomics 2001;2(3):143-54.
2000: Peter J Myler; Ellen Sisk; Paul D McDonagh; Santiago Martinez-Calvillo; Achim Schnaufer; Susan M Sunkin; Shaofeng Yan; Madhubala rentala; Alasdair Ivens; Kenneth Stuart
Genomic organization and gene function in Leishmania.
Biochemical Society transactions 2000;28(5):527-31.
2000: Alasdair Ivens
Hurrah for genome projects!
Parasitology today (Personal ed.) 2000;16(8):317-20.
1999: M Blaxter; Alasdair Ivens
Reports from the cutting edge of parasitic genome analysis.
Parasitology today (Personal ed.) 1999;15(11):430-1.
1999: Alasdair Ivens; Jenefer M Blackwell
The Leishmania genome comes of Age.
Parasitology today (Personal ed.) 1999;15(6):225-31.
1999: Peter J Myler; L Audleman; T deVos; G Hixson; Patti Kiser; C Lemley; C Magness; E Rickel; Ellen Sisk; Susan M Sunkin; S Swartzell; T Westlake; Patrick Bastien; G Fu; Alasdair Ivens; Kenneth Stuart
Leishmania major Friedlin chromosome 1 has an unusual distribution of protein-coding genes.
Proceedings of the National Academy of Sciences of the United States of America 1999;96(6):2902-6.
1999: D A Johnston; M L Blaxter; Wim Degrave; J Foster; Alasdair Ivens; S E Melville
Genomics and the biology of parasites.
BioEssays : news and reviews in molecular, cellular and developmental biology 1999;21(2):131-47.
1999: Sabina I Belli; A Formenton; Tanja Noll; Alasdair Ivens; R Jacquet; Chantal Desponds; D Hofer; Nicolas Fasel
Leishmania major: histone H1 gene expression from the sw3 locus.
Experimental parasitology 1999;91(2):151-60.
1998: Christine Clayton; M Adams; Renata Almeida; Théo Baltz; M Barrett; Patrick Bastien; S Belli; Stephen M Beverley; Nicolas Biteau; J Blackwell; Christine Blaineau; Michael Boshart; Frédéric Bringaud; G Cross; A Cruz; Wim Degrave; John E Donelson; Najib M El-Sayed; G Fu; Klaus Ersfeld; Wendy Gibson; Keith Gull; Alasdair Ivens; J Kelly; L Vanhamme
Genetic nomenclature for Trypanosoma and Leishmania.
Molecular and biochemical parasitology 1998;97(1-2):221-4.
1998: C Ravel; Pascal Dubessay; Patrick Bastien; J M Blackwell; Alasdair Ivens
The complete chromosomal organization of the reference strain of the Leishmania Genome Project, L. major ;Friedlin'.
Parasitology today (Personal ed.) 1998;14(8):301-3.
1998: B R Voth; Ben L Kelly; Phalgun B Joshi; Alasdair Ivens; W Robert McMaster
Differentially expressed Leishmania major gp63 genes encode cell surface leishmanolysin with distinct signals for glycosylphosphatidylinositol attachment.
Molecular and biochemical parasitology 1998;93(1):31-41.
1998: Alasdair Ivens; S M Lewis; A Bagherzadeh; L Zhang; H M Chan; Deborah Smith
A physical map of the Leishmania major Friedlin genome.
Genome research 1998;8(2):135-45.
1997: Alasdair Ivens; Deborah Smith
Parasite genome analysis. A global map of the Leishmania major genome: prelude to genomic sequencing.
Transactions of the Royal Society of Tropical Medicine and Hygiene 1997;91(2):111-5.
1996: Alasdair Ivens; J M Blackwell
Unravelling the Leishmania genome.
Current opinion in genetics & development 1996;6(6):704-10.
1995: Jan M N Hoovers; Linda M Kalikin; L A Johnson; Marielle Alders; B Redeker; David J Law; Jet Bliek; MJ Steenman; M Benedict; Joop Wiegant; Christoph Lengauer; P Taillon-Miller; David Schlessinger; M C Edwards; Stephen J Elledge; Alasdair Ivens; Andries Westerveld; P Little; marcel mannens; Andrew P Feinberg
Multiple genetic loci within 11p15 defined by Beckwith-Wiedemann syndrome rearrangement breakpoints and subchromosomal transferable fragments.
Proceedings of the National Academy of Sciences of the United States of America 1995;92(26):12456-60.
1994: E Redeker; Jan M N Hoovers; Marielle Alders; C J van Moorsel; Alasdair Ivens; S Gregory; Linda M Kalikin; Jet Bliek; L de Galan; R van den Bogaard
An integrated physical map of 210 markers assigned to the short arm of human chromosome 11.
Genomics 1994;21(3):538-50.
1992: A Puech; L Ahnine; Hermann-Josef Lüdecke; Gabriele Senger; Alasdair Ivens; Cécile Jeanpierre; P Little; Bernhard Horsthemke; Uwe Claussen; C Jones
11p15.5-specific libraries for identification of potential gene sequences involved in Beckwith-Wiedemann syndrome and tumorigenesis.
Genomics 1992;13(4):1274-80.
1992: I J Heding; Alasdair Ivens; J Wilson; M Strivens; S Gregory; Jan M N Hoovers; marcel mannens; B Redeker; D Porteous; Veronica van Heyningen
The generation of ordered sets of cosmid DNA clones from human chromosome region 11p.
Genomics 1992;13(1):89-94.
1991: Jane E Hewitt; L N Clark; Alasdair Ivens; R Williamson
Structure and sequence of the human homeobox gene HOX7.
Genomics 1991;11(3):670-8.
1991: Gudrun E Moore; R Williamson; O Jensson; J Chambers; F Takakubo; R Newton; M A Balacs; Alasdair Ivens
Localization of a mutant gene for cleft palate and ankyloglossia in an X-linked Icelandic family.
Journal of craniofacial genetics and developmental biology 1991;11(4):372-6.