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Yousif Shamoo

Research Profile

Genes & Molecular Sequences

Amino Acid Sequences

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TOP 3
Aditya Agrawal; Pulickel M Ajayan; Brent J Carey; Walter G Chapman; Alin C Chipara; Prabir K Patra; Yousif Shamoo; Rafael Verduzco
Dynamic self-stiffening in liquid crystal elastomers.
Milya Davlieva; Cesar A Arias; Wanna Zhang; Yousif Shamoo
Biochemical characterization of cardiolipin synthase mutations associated with daptomycin resistance in enterococci.
Truc T Tran; George M Weinstock; Arnold S Bayer; Lorena Diaz; Hongyu Gao; Elizabeth A Lobos; Nagendra N Mishra; Jose M Munita; Barbara E Murray; Diana Panesso; Jinnethe Reyes; Jung H Roh; Yousif Shamoo; Cesar A Arias
Whole-genome analysis of a daptomycin-susceptible enterococcus faecium strain and its daptomycin-resistant variant arising during therapy.

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All Publications

2013: Aditya Agrawal; Pulickel M Ajayan; Brent J Carey; Walter G Chapman; Alin C Chipara; Prabir K Patra; Yousif Shamoo; Rafael Verduzco
Dynamic self-stiffening in liquid crystal elastomers.
Nature communications 2013;4():1739.
2013: Milya Davlieva; Cesar A Arias; Wanna Zhang; Yousif Shamoo
Biochemical characterization of cardiolipin synthase mutations associated with daptomycin resistance in enterococci.
Antimicrobial agents and chemotherapy 2013;57(1):289-96.
2013: Truc T Tran; George M Weinstock; Arnold S Bayer; Lorena Diaz; Hongyu Gao; Elizabeth A Lobos; Nagendra N Mishra; Jose M Munita; Barbara E Murray; Diana Panesso; Jinnethe Reyes; Jung H Roh; Yousif Shamoo; Cesar A Arias
Whole-genome analysis of a daptomycin-susceptible enterococcus faecium strain and its daptomycin-resistant variant arising during therapy.
Antimicrobial agents and chemotherapy 2013;57(1):261-8.
2012: Katarzyna Walkiewicz; Christine Sun; Colin Bacorn; Andres S Benitez Cardenas; Gerda Saxer; Yousif Shamoo
Small changes in enzyme function can lead to surprisingly large fitness effects during adaptive evolution of antibiotic resistance.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(52):21408-13.
2011: Katarzyna Walkiewicz; Gang Wu; Milya Davlieva; Yousif Shamoo
Crystal structure of Bacteroides thetaiotaomicron TetX2: a tetracycline degrading monooxygenase at 2.8 Å resolution.
Proteins 2011;79(7):2335-40.
2010: Corwin Miller; Milya Davlieva; Corey Wilson; Kristopher I White; Rafael Couñago; Gang Wu; Jeffrey C Myers; Pernilla Wittung-Stafshede; Yousif Shamoo
Experimental evolution of adenylate kinase reveals contrasting strategies toward protein thermostability.
Biophysical journal 2010;99(3):887-96.
2010: Matthew I Peña; Milya Davlieva; Matthew R Bennett; John S Olson; Yousif Shamoo
Evolutionary fates within a microbial population highlight an essential role for protein folding during natural selection.
Molecular systems biology 2010;6():387.
2010: Matthew I Peña; Elizabeth Van Itallie; Matthew R Bennett; Yousif Shamoo
Evolution of a single gene highlights the complexity underlying molecular descriptions of fitness.
Chaos (Woodbury, N.Y.) 2010;20(2):026107.
2010: Milya Davlieva; Yousif Shamoo
Crystal structure of a trimeric archaeal adenylate kinase from the mesophile Methanococcus maripaludis with an unusually broad functional range and thermal stability.
Proteins 2010;78(2):357-64.
2009: Milya Davlieva; Yousif Shamoo
Structure and biochemical characterization of an adenylate kinase originating from the psychrophilic organism Marinibacillus marinus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2009;65(Pt 8):751-6.
2009: Megan Guelker; Loren Stagg; Pernilla Wittung-Stafshede; Yousif Shamoo
Pseudosymmetry, high copy number and twinning complicate the structure determination of Desulfovibrio desulfuricans (ATCC 29577) flavodoxin.
Acta crystallographica. Section D, Biological crystallography 2009;65(Pt 6):523-34.
2008: Rafael Couñago; Corey J Wilson; Matthew I Peña; Pernilla Wittung-Stafshede; Yousif Shamoo
An adaptive mutation in adenylate kinase that increases organismal fitness is linked to stability-activity trade-offs.
Protein engineering, design & selection : PEDS 2008;21(1):19-27.
2007: Andrew W Woodward; Sarah E Ratzel; Erin E Woodward; Yousif Shamoo; Bonnie Bartel
Mutation of E1-CONJUGATING ENZYME-RELATED1 decreases RELATED TO UBIQUITIN conjugation and alters auxin response and development.
Plant physiology 2007;144(2):976-87.
2006: Natalia Palacios; J Allers; J Myers; Yousif Shamoo
Protein-RNA interactions: exploring binding patterns with a three-dimensional superposition analysis of high resolution structures.
Bioinformatics (Oxford, England) 2006;22(22):2746-52.
2006: Adina A Maximciuc; John A Putkey; Yousif Shamoo; Kevin R MacKenzie
Complex of calmodulin with a ryanodine receptor target reveals a novel, flexible binding mode.
Structure (London, England : 1993) 2006;14(10):1547-56.
2006: Siyang Sun; Linda Geng; Yousif Shamoo
Structure and enzymatic properties of a chimeric bacteriophage RB69 DNA polymerase and single-stranded DNA binding protein with increased processivity.
Proteins 2006;65(1):231-8.
2006: Debra A Brock; Wouter N van Egmond; Yousif Shamoo; R Diane Hatton; Richard H Gomer
A 60-kilodalton protein component of the counting factor complex regulates group size in Dictyostelium discoideum.
Eukaryotic cell 2006;5(9):1532-8.
2006: Rafael Couñago; Stephen Chen; Yousif Shamoo
In vivo molecular evolution reveals biophysical origins of organismal fitness.
Molecular cell 2006;22(4):441-9.
2005: Rafael Couñago; Yousif Shamoo
Gene replacement of adenylate kinase in the gram-positive thermophile Geobacillus stearothermophilus disrupts adenine nucleotide homeostasis and reduces cell viability.
Extremophiles : life under extreme conditions 2005;9(2):135-44.
2004: John B Bruning; Yousif Shamoo
Structural and thermodynamic analysis of human PCNA with peptides derived from DNA polymerase-delta p66 subunit and flap endonuclease-1.
Structure (London, England : 1993) 2004;12(12):2209-19.
2004: Jeffrey C Myers; Yousif Shamoo
Human UP1 as a model for understanding purine recognition in the family of proteins containing the RNA recognition motif (RRM).
Journal of molecular biology 2004;342(3):743-56.
2003: Jeffrey C Myers; Sheila A Moore; Yousif Shamoo
Structure-based incorporation of 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine into the human telomeric repeat DNA as a probe for UP1 binding and destabilization of G-tetrad structures.
The Journal of biological chemistry 2003;278(43):42300-6.
2003: Yousif Shamoo
Structural insights into BRCA2 function.
Current opinion in structural biology 2003;13(2):206-11.
2003: Siyang Sun; Yousif Shamoo
Biochemical characterization of interactions between DNA polymerase and single-stranded DNA-binding protein in bacteriophage RB69.
The Journal of biological chemistry 2003;278(6):3876-81.
2001: J Allers; Yousif Shamoo
Structure-based analysis of protein-RNA interactions using the program ENTANGLE.
Journal of molecular biology 2001;311(1):75-86.
1999: Yousif Shamoo; Thomas A Steitz
Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
Cell 1999;99(2):155-66.
1997: Yousif Shamoo; U Krueger; LM Rice; Kenneth R Williams; Thomas A Steitz
Crystal structure of the two RNA binding domains of human hnRNP A1 at 1.75 A resolution.
Nature structural biology 1997;4(3):215-22.
1995: Yousif Shamoo; Alan Friedman; M R Parsons; William Konigsberg; Thomas A Steitz
Crystal structure of a replication fork single-stranded DNA binding protein (T4 gp32) complexed to DNA.
Nature 1995;376(6538):362-6.
1995: Yousif Shamoo; N Abdul-Manan; Kenneth R Williams
Multiple RNA binding domains (RBDs) just don't add up.
Nucleic acids research 1995;23(5):725-8.
1994: Yousif Shamoo; N Abdul-Manan; Ann Patten; J K Crawford; M C Pellegrini; Kenneth R Williams
Both RNA-binding domains in heterogenous nuclear ribonucleoprotein A1 contribute toward single-stranded-RNA binding.
Biochemistry 1994;33(27):8272-81.
1994: Daniel S Garrett; P J Lodi; Yousif Shamoo; K R Williams; G Marius Clore; Angela M Gronenborn
Determination of the secondary structure and folding topology of an RNA binding domain of mammalian hnRNP A1 protein using three-dimensional heteronuclear magnetic resonance spectroscopy.
Biochemistry 1994;33(10):2852-8.
1993: Yousif Shamoo; A Tam; William Konigsberg; Kenneth R Williams
Translational repression by the bacteriophage T4 gene 32 protein involves specific recognition of an RNA pseudoknot structure.
Journal of molecular biology 1993;232(1):89-104.
1991: K R Webster; Yousif Shamoo; William Konigsberg; Eleanor K Spicer
A rapid method for purification of synthetic oligoribonucleotides.
BioTechniques 1991;11(5):658-61.
1991: Yousif Shamoo; K R Webster; Kenneth R Williams; William Konigsberg
A retrovirus-like zinc domain is essential for translational repression of bacteriophage T4 gene 32.
The Journal of biological chemistry 1991;266(13):7967-70.
1990: S G Nadler; W J Roberts; Yousif Shamoo; Kenneth R Williams
A novel function for zinc(II) in a nucleic acid-binding protein. Contribution of zinc(II) toward the cooperativity of bacteriophage T4 gene 32 protein binding.
The Journal of biological chemistry 1990;265(18):10389-94.
1989: Yousif Shamoo; L R Ghosaini; K M Keating; Kenneth R Williams; Julian M Sturtevant; William Konigsberg
Site-specific mutagenesis of T4 gene 32: the role of tyrosine residues in protein-nucleic acid interactions.
Biochemistry 1989;28(18):7409-17.
1988: Yousif Shamoo; Kenneth R Williams; William Konigsberg
Photochemical crosslinking of bacteriophage T4 single-stranded DNA-binding protein (gp32) to oligo-p(dT)8: identification of phenylalanine-183 as the site of crosslinking.
Proteins 1988;4(1):1-6.
1986: Yousif Shamoo; H Adari; William Konigsberg; Kenneth R Williams; J W Chase
Cloning of T4 gene 32 and expression of the wild-type protein under lambda promoter PL regulation in Escherichia coli.
Proceedings of the National Academy of Sciences of the United States of America 1986;83(23):8844-8.
1986: R V Prigodich; Yousif Shamoo; Kenneth R Williams; J W Chase; William Konigsberg; JE Coleman
1H NMR (500 MHz) identification of aromatic residues of gene 32 protein involved in DNA binding by use of protein containing perdeuterated aromatic residues and by site-directed mutagenesis.
Biochemistry 1986;25(12):3666-72.
1986: JE Coleman; Kenneth R Williams; G C King; R V Prigodich; Yousif Shamoo; William Konigsberg
Protein chemistry-nuclear magnetic resonance approach to mapping functional domains in single-stranded DNA binding proteins.
Journal of cellular biochemistry 1986;32(4):305-26.