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Koreaki Ito

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Chemicals & Drugs

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Escherichia coli

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Amino Acid Sequences

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Yuhei Chadani; Koreaki Ito; Kazuhiro Kutsukake; Tatsuhiko Abo
ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli.
Shinobu Chiba; Koreaki Ito
Multisite ribosomal stalling: a unique mode of regulatory nascent chain action revealed for MifM.
Akira Saito; Shinobu Chiba; Yohei Hizukuri; Koreaki Ito; Ei-ichi Matsuo; Hiroyuki Mori; Osamu Nishimura; Yoshinori Akiyama
Post-liberation cleavage of signal peptides is catalyzed by the site-2 protease (S2P) in bacteria.

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All Publications

2012: Yuhei Chadani; Koreaki Ito; Kazuhiro Kutsukake; Tatsuhiko Abo
ArfA recruits release factor 2 to rescue stalled ribosomes by peptidyl-tRNA hydrolysis in Escherichia coli.
Molecular microbiology 2012;86(1):37-50.
2012: Shinobu Chiba; Koreaki Ito
Multisite ribosomal stalling: a unique mode of regulatory nascent chain action revealed for MifM.
Molecular cell 2012;47(6):863-72.
2011: Akira Saito; Shinobu Chiba; Yohei Hizukuri; Koreaki Ito; Ei-ichi Matsuo; Hiroyuki Mori; Osamu Nishimura; Yoshinori Akiyama
Post-liberation cleavage of signal peptides is catalyzed by the site-2 protease (S2P) in bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(33):13740-5.
2011: Tomoya Tsukazaki; Dmitry G Vassylyev; Anna Perederina; Takeshi Tanaka; Yuka Echizen; Shuya Fukai; Ryuichiro Ishitani; Koreaki Ito; Toshiyuki Kohno; Andrés D Maturana; Hiroyuki Mori; Osamu Nureki
Structure and function of a membrane component SecDF that enhances protein export.
Nature 2011;474(7350):235-8.
2011: Shinobu Chiba; Takashi Kanamori; Takuya Ueda; Yoshinori Akiyama; Kit Pogliano; Koreaki Ito
Recruitment of a species-specific translational arrest module to monitor different cellular processes.
Proceedings of the National Academy of Sciences of the United States of America 2011;108(15):6073-8.
2011: David Ron; Koreaki Ito
Cell biology. A translational pause to localize.
Science (New York, N.Y.) 2011;331(6017):543-4.
2010: Koreaki Ito; Shinobu Chiba; Kit Pogliano
Divergent stalling sequences sense and control cellular physiology.
Biochemical and biophysical research communications 2010;393(1):1-5.
2010: Koreaki Ito
Editing disulphide bonds: error correction using redox currencies.
Molecular microbiology 2010;75(1):1-5.
2009: Kenji Inaba; Satoshi Murakami; Atsushi Nakagawa; Hiroka Iida; Mai Kinjo; Koreaki Ito; Mamoru Suzuki
Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.
The EMBO journal 2009;28(6):779-91.
2008: Kenji Inaba; Mamoru Suzuki; Ken-ichi Maegawa; Shuji Akiyama; Koreaki Ito; Yoshinori Akiyama
A pair of circularly permutated PDZ domains control RseP, the S2P family intramembrane protease of Escherichia coli.
The Journal of biological chemistry 2008;283(50):35042-52.
2008: Tomoya Tsukazaki; Hiroyuki Mori; Shuya Fukai; Ryuichiro Ishitani; Takaharu Mori; Naoshi Dohmae; Anna Perederina; Yuji Sugita; Dmitry G Vassylyev; Koreaki Ito; Osamu Nureki
Conformational transition of Sec machinery inferred from bacterial SecYE structures.
Nature 2008;455(7215):988-91.
2008: Koreaki Ito; Kenji Inaba
The disulfide bond formation (Dsb) system.
Current opinion in structural biology 2008;18(4):450-8.
2008: Kayo Koide; Koreaki Ito; Yoshinori Akiyama
Substrate recognition and binding by RseP, an Escherichia coli intramembrane protease.
The Journal of biological chemistry 2008;283(15):9562-70.
2008: Kenji Inaba; Koreaki Ito
Structure and mechanisms of the DsbB-DsbA disulfide bond generation machine.
Biochimica et biophysica acta 2008;1783(4):520-9.
2008: Hiroki Muto; Koreaki Ito
Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin.
Biochemical and biophysical research communications 2008;366(4):1043-7.
2007: Koreaki Ito
[Finding of translocon].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2007;52(12):1480-31.
2007: Kenji Inaba; Koreaki Ito
[Structural basis for disulfide bond generation in the cell].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2007;52(8):853-61.
2007: Saki Maegawa; Kayo Koide; Koreaki Ito; Yoshinori Akiyama
The intramembrane active site of GlpG, an E. coli rhomboid protease, is accessible to water and hydrolyses an extramembrane peptide bond of substrates.
Molecular microbiology 2007;64(2):435-47.
2007: Kayo Koide; Saki Maegawa; Koreaki Ito; Yoshinori Akiyama
Environment of the active site region of RseP, an Escherichia coli regulated intramembrane proteolysis protease, assessed by site-directed cysteine alkylation.
The Journal of biological chemistry 2007;282(7):4553-60.
2007: Nobuyuki Shimohata; Shushi Nagamori; Yoshinori Akiyama; H Ronald Kaback; Koreaki Ito
SecY alterations that impair membrane protein folding and generate a membrane stress.
The Journal of cell biology 2007;176(3):307-17.
2006: Hiroki Muto; Koreaki Ito
[New concepts gained from the study of SecM, a secretion monitor protein].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2006;51(16 Suppl):2583-9.
2006: Dmitry G Vassylyev; Hiroyuki Mori; Marina N Vassylyeva; Tomoya Tsukazaki; Yoshiaki Kimura; Tahir Tahirov; Koreaki Ito
Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer.
Journal of molecular biology 2006;364(3):248-58.
2006: Hiroyuki Mori; Koreaki Ito
The long alpha-helix of SecA is important for the ATPase coupling of translocation.
The Journal of biological chemistry 2006;281(47):36249-56.
2006: Kenji Inaba; Satoshi Murakami; Mamoru Suzuki; Atsushi Nakagawa; Eiki Yamashita; Kengo Okada; Koreaki Ito
Crystal structure of the DsbB-DsbA complex reveals a mechanism of disulfide bond generation.
Cell 2006;127(4):789-801.
2006: Hiroyuki Mori; Koreaki Ito
Different modes of SecY-SecA interactions revealed by site-directed in vivo photo-cross-linking.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(44):16159-64.
2006: Marina N Vassylyeva; Hiroyuki Mori; Tomoya Tsukazaki; Shigeyuki Yokoyama; Tahir Tahirov; Koreaki Ito; Dmitry G Vassylyev
Cloning, expression, purification, crystallization and initial crystallographic analysis of the preprotein translocation ATPase SecA from Thermus thermophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 9):909-12.
2006: Hiroki Muto; Hitoshi Nakatogawa; Koreaki Ito
Genetically encoded but nonpolypeptide prolyl-tRNA functions in the A site for SecM-mediated ribosomal stall.
Molecular cell 2006;22(4):545-52.
2006: Yoh-hei Takahashi; Kenji Inaba; Koreaki Ito
Role of the cytosolic loop of DsbB in catalytic turnover of the ubiquinone-DsbB complex.
Antioxidants & redox signaling 2006;8(5-6):743-52.
2006: Koreaki Ito
Redox control of protein processing: from electrons to cells.
Antioxidants & redox signaling 2006;8(5-6):729-30.
2006: Tomoya Tsukazaki; Hiroyuki Mori; Shuya Fukai; Tomoyuki Numata; Anna Perederina; Hiroaki Adachi; Hiroyoshi Matsumura; Kazufumi Takano; Satoshi Murakami; Tsuyoshi Inoue; Yusuke Mori; Takatomo Sasaki; Dmitry G Vassylyev; Osamu Nureki; Koreaki Ito
Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 4):376-80.
2006: Shinobu Chiba; Koreaki Ito; Yoshinori Akiyama
The Escherichia coli plasma membrane contains two PHB (prohibitin homology) domain protein complexes of opposite orientations.
Molecular microbiology 2006;60(2):448-57.
2006: Kenji Inaba; Yoh-hei Takahashi; Koreaki Ito; Shigehiko Hayashi
Critical role of a thiolate-quinone charge transfer complex and its adduct form in de novo disulfide bond generation by DsbB.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(2):287-92.
2005: Saki Maegawa; Koreaki Ito; Yoshinori Akiyama
Proteolytic action of GlpG, a rhomboid protease in the Escherichia coli cytoplasmic membrane.
Biochemistry 2005;44(41):13543-52.
2005: Machiko Sakoh; Koreaki Ito; Yoshinori Akiyama
Proteolytic activity of HtpX, a membrane-bound and stress-controlled protease from Escherichia coli.
The Journal of biological chemistry 2005;280(39):33305-10.
2005: Kenji Inaba; Yoh-hei Takahashi; Koreaki Ito
Reactivities of quinone-free DsbB from Escherichia coli.
The Journal of biological chemistry 2005;280(38):33035-44.
2005: Koreaki Ito
Ribosome-based protein folding systems are structurally divergent but functionally universal across biological kingdoms.
Molecular microbiology 2005;57(2):313-7.
2005: Nobuyuki Shimohata; Yoshinori Akiyama; Koreaki Ito
Peculiar properties of DsbA in its export across the Escherichia coli cytoplasmic membrane.
Journal of bacteriology 2005;187(12):3997-4004.
2005: Hitoshi Nakatogawa; Akiko Murakami; Hiroyuki Mori; Koreaki Ito
SecM facilitates translocase function of SecA by localizing its biosynthesis.
Genes & development 2005;19(4):436-44.
2005: Koreaki Ito; Yoshinori Akiyama
Cellular functions, mechanism of action, and regulation of FtsH protease.
Annual review of microbiology 2005;59():211-31.
2004: Yoshinori Akiyama; Kazue Kanehara; Koreaki Ito
RseP (YaeL), an Escherichia coli RIP protease, cleaves transmembrane sequences.
The EMBO journal 2004;23(22):4434-42.
2004: Yoh-hei Takahashi; Kenji Inaba; Koreaki Ito
Characterization of the menaquinone-dependent disulfide bond formation pathway of Escherichia coli.
The Journal of biological chemistry 2004;279(45):47057-65.
2004: Akiko Murakami; Hitoshi Nakatogawa; Koreaki Ito
Translation arrest of SecM is essential for the basal and regulated expression of SecA.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(33):12330-5.
2004: Hiroyuki Mori; Naomi Shimokawa; Yasunari Satoh; Koreaki Ito
Mutational analysis of transmembrane regions 3 and 4 of SecY, a central component of protein translocase.
Journal of bacteriology 2004;186(12):3960-9.
2004: Hitoshi Nakatogawa; Koreaki Ito
[The functions of the ribosomal tunnel in a birth of proteins].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2004;49(7 Suppl):829-33.
2004: Hitoshi Nakatogawa; Akiko Murakami; Koreaki Ito
Control of SecA and SecM translation by protein secretion.
Current opinion in microbiology 2004;7(2):145-50.
2004: Naoya Saikawa; Yoshinori Akiyama; Koreaki Ito
FtsH exists as an exceptionally large complex containing HflKC in the plasma membrane of Escherichia coli.
Journal of structural biology 2004;146(1-2):123-9.
2004: Kenji Inaba; Yoh-hei Takahashi; Nobutaka Fujieda; Kenji Kano; Hideto Miyoshi; Koreaki Ito
DsbB elicits a red-shift of bound ubiquinone during the catalysis of DsbA oxidation.
The Journal of biological chemistry 2004;279(8):6761-8.
2004: Hitoshi Nakatogawa; Koreaki Ito
Intraribosomal regulation of expression and fate of proteins.
Chembiochem : a European journal of chemical biology 2004;5(1):48-51.
2003: Kazue Kanehara; Koreaki Ito; Yoshinori Akiyama
YaeL proteolysis of RseA is controlled by the PDZ domain of YaeL and a Gln-rich region of RseA.
The EMBO journal 2003;22(23):6389-98.
2003: Yasunari Satoh; Hiroyuki Mori; Koreaki Ito
Nearest neighbor analysis of the SecYEG complex. 2. Identification of a SecY-SecE cytosolic interface.
Biochemistry 2003;42(24):7442-7.
2003: Yasunari Satoh; Gen Matsumoto; Hiroyuki Mori; Koreaki Ito
Nearest neighbor analysis of the SecYEG complex. 1. Identification of a SecY-SecG interface.
Biochemistry 2003;42(24):7434-41.
2003: Yoshinori Akiyama; Koreaki Ito
Reconstitution of membrane proteolysis by FtsH.
The Journal of biological chemistry 2003;278(20):18146-53.
2003: N Shimokawa; Hiroyuki Mori; Koreaki Ito
Importance of transmembrane segments in Escherichia coli SecY.
Molecular genetics and genomics : MGG 2003;269(2):180-7.
2003: Hiroyuki Mori; Tomoya Tsukazaki; Ryoji Masui; Seiki Kuramitsu; Shigeyuki Yokoyama; Arthur E Johnson; Yoshiaki Kimura; Yoshinori Akiyama; Koreaki Ito
Fluorescence resonance energy transfer analysis of protein translocase. SecYE from Thermus thermophilus HB8 forms a constitutive oligomer in membranes.
The Journal of biological chemistry 2003;278(16):14257-64.
2003: Hitoshi Nakatogawa; Koreaki Ito
[Translation arrest and its involvement in protein translocation across membranes].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 2003;48(4 Suppl):338-45.
2003: E Matsuo; Hiroyuki Mori; Koreaki Ito
Interfering mutations provide in vivo evidence that Escherichia coli SecE functions in multimeric states.
Molecular genetics and genomics : MGG 2003;268(6):808-15.
2003: Brian Søgaard Laursen; Igor Siwanowicz; Guilhem Larigauderie; Jakob Hedegaard; Koreaki Ito; Yoshikazu Nakamura; John M Kenney; Kim Kusk Mortensen; Hans Uffe Sperling-Petersen
Characterization of mutations in the GTP-binding domain of IF2 resulting in cold-sensitive growth of Escherichia coli.
Journal of molecular biology 2003;326(2):543-51.
2003: Hiroyuki Mori; Yoshinori Akiyama; Koreaki Ito
A SecE mutation that modulates SecY-SecE translocase assembly, identified as a specific suppressor of SecY defects.
Journal of bacteriology 2003;185(3):948-56.
2003: Hiroyuki Mori; Koreaki Ito
Biochemical characterization of a mutationally altered protein translocase: proton motive force stimulation of the initiation phase of translocation.
Journal of bacteriology 2003;185(2):405-12.
2002: Hiroyuki Mori; Yuhsuke Shimizu; Koreaki Ito
Superactive SecY variants that fulfill the essential translocation function with a reduced cellular quantity.
The Journal of biological chemistry 2002;277(50):48550-7.
2002: Shinobu Chiba; Yoshinori Akiyama; Koreaki Ito
Membrane protein degradation by FtsH can be initiated from either end.
Journal of bacteriology 2002;184(17):4775-82.
2002: Kazue Kanehara; Koreaki Ito; Yoshinori Akiyama
YaeL (EcfE) activates the sigma(E) pathway of stress response through a site-2 cleavage of anti-sigma(E), RseA.
Genes & development 2002;16(16):2147-55.
2002: Nobuyuki Shimohata; Shinobu Chiba; Naoya Saikawa; Koreaki Ito; Yoshinori Akiyama
The Cpx stress response system of Escherichia coli senses plasma membrane proteins and controls HtpX, a membrane protease with a cytosolic active site.
Genes to cells : devoted to molecular & cellular mechanisms 2002;7(7):653-62.
2002: Kenji Inaba; Koreaki Ito
Paradoxical redox properties of DsbB and DsbA in the protein disulfide-introducing reaction cascade.
The EMBO journal 2002;21(11):2646-54.
2002: Kazuhiko Chiba; Hiroyuki Mori; Koreaki Ito
Roles of the C-terminal end of SecY in protein translocation and viability of Escherichia coli.
Journal of bacteriology 2002;184(8):2243-50.
2002: Hitoshi Nakatogawa; Koreaki Ito
The ribosomal exit tunnel functions as a discriminating gate.
Cell 2002;108(5):629-36.
2002: Naoya Saikawa; Koreaki Ito; Yoshinori Akiyama
Identification of glutamic acid 479 as the gluzincin coordinator of zinc in FtsH (HflB).
Biochemistry 2002;41(6):1861-8.
2001: Kazue Kanehara; Yoshinori Akiyama; Koreaki Ito
Characterization of the yaeL gene product and its S2P-protease motifs in Escherichia coli.
Gene 2001;281(1-2):71-9.
2001: Yoshinori Akiyama; Koreaki Ito
Roles of homooligomerization and membrane association in ATPase and proteolytic activities of FtsH in vitro.
Biochemistry 2001;40(25):7687-93.
2001: A Kihara; Yoshinori Akiyama; Koreaki Ito
Revisiting the lysogenization control of bacteriophage lambda. Identification and characterization of a new host component, HflD.
The Journal of biological chemistry 2001;276(17):13695-700.
2001: Hirotada Mori; Koreaki Ito
An essential amino acid residue in the protein translocation channel revealed by targeted random mutagenesis of SecY.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(9):5128-33.
2001: Hitoshi Nakatogawa; Koreaki Ito
Secretion monitor, SecM, undergoes self-translation arrest in the cytosol.
Molecular cell 2001;7(1):185-92.
2001: Takuya Kobayashi; Yoh-hei Takahashi; Koreaki Ito
Identification of a segment of DsbB essential for its respiration-coupled oxidation.
Molecular microbiology 2001;39(1):158-65.
2000: G Matsumoto; Hitoshi Nakatogawa; Hiroyuki Mori; Koreaki Ito
Genetic dissection of SecA: suppressor mutations against the secY205 translocase defect.
Genes to cells : devoted to molecular & cellular mechanisms 2000;5(12):991-9.
2000: Hitoshi Nakatogawa; Hiroyuki Mori; Koreaki Ito
Two independent mechanisms down-regulate the intrinsic SecA ATPase activity.
The Journal of biological chemistry 2000;275(43):33209-12.
2000: Yoshinori Akiyama; Koreaki Ito
Roles of multimerization and membrane association in the proteolytic functions of FtsH (HflB).
The EMBO journal 2000;19(15):3888-95.
2000: S Chiba; Y Akiyama; Hiroyuki Mori; E Matsuo; Koreaki Ito
Length recognition at the N-terminal tail for the initiation of FtsH-mediated proteolysis.
EMBO reports 2000;1(1):47-52.
2000: G Matsumoto; T Homma; Hiroyuki Mori; Koreaki Ito
A mutation in secY that causes enhanced SecA insertion and impaired late functions in protein translocation.
Journal of bacteriology 2000;182(12):3377-82.
2000: Hitoshi Nakatogawa; Hiroyuki Mori; G Matsumoto; Koreaki Ito
Characterization of a mutant form of SecA that alleviates a SecY defect at low temperature and shows a synthetic defect with SecY alteration at high temperature.
Journal of biochemistry 2000;127(6):1071-9.
1999: E Matsuo; G Sampei; K Mizobuchi; Koreaki Ito
The plasmid F OmpP protease, a homologue of OmpT, as a potential obstacle to E. coli-based protein production.
FEBS letters 1999;461(1-2):6-8.
1999: A Kihara; Yoshinori Akiyama; Koreaki Ito
Dislocation of membrane proteins in FtsH-mediated proteolysis.
The EMBO journal 1999;18(11):2970-81.
1999: Takuya Kobayashi; Koreaki Ito
Respiratory chain strongly oxidizes the CXXC motif of DsbB in the Escherichia coli disulfide bond formation pathway.
The EMBO journal 1999;18(5):1192-8.
1998: G Matsumoto; Hirotada Mori; Koreaki Ito
Roles of SecG in ATP- and SecA-dependent protein translocation.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(23):13567-72.
1998: A Kihara; Koreaki Ito
Translocation, folding, and stability of the HflKC complex with signal anchor topogenic sequences.
The Journal of biological chemistry 1998;273(45):29770-5.
1998: Yoshinori Akiyama; A Kihara; Hiroyuki Mori; T Ogura; Koreaki Ito
Roles of the periplasmic domain of Escherichia coli FtsH (HflB) in protein interactions and activity modulation.
The Journal of biological chemistry 1998;273(35):22326-33.
1998: E Matsuo; Hiroyuki Mori; Takashi Shimoike; Koreaki Ito
Syd, a SecY-interacting protein, excludes SecA from the SecYE complex with an altered SecY24 subunit.
The Journal of biological chemistry 1998;273(30):18835-40.
1998: A Kihara; Yoshinori Akiyama; Koreaki Ito
Different pathways for protein degradation by the FtsH/HflKC membrane-embedded protease complex: an implication from the interference by a mutant form of a new substrate protein, YccA.
Journal of molecular biology 1998;279(1):175-88.
1998: E Matsuo; Koreaki Ito
Genetic analysis of an essential cytoplasmic domain of Escherichia coli SecY based on resistance to Syd, a SecY-interacting protein.
Molecular & general genetics : MGG 1998;258(3):240-9.
1998: Yoshinori Akiyama; M Ehrmann; A Kihara; Koreaki Ito
Polypeptide binding of Escherichia coli FtsH (HflB).
Molecular microbiology 1998;28(4):803-12.
1998: M Sone; Koreaki Ito
[Cellular machinery for the introduction of disulfide bonds to proteins].
Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme 1998;43(1):1-10.
1997: G Matsumoto; T Yoshihisa; Koreaki Ito
SecY and SecA interact to allow SecA insertion and protein translocation across the Escherichia coli plasma membrane.
The EMBO journal 1997;16(21):6384-93.
1997: Takuya Kobayashi; S Kishigami; Masakatsu Sone; Hachiro Inokuchi; Tatsushi Mogi; Koreaki Ito
Respiratory chain is required to maintain oxidized states of the DsbA-DsbB disulfide bond formation system in aerobically growing Escherichia coli cells.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(22):11857-62.
1997: T Taura; T Yoshihisa; Koreaki Ito
Protein translocation functions of Escherichia coli SecY: in vitro characterization of cold-sensitive secY mutants.
Biochimie 1997;79(8):517-21.
1997: A Kihara; Yoshinori Akiyama; Koreaki Ito
Host regulation of lysogenic decision in bacteriophage lambda: transmembrane modulation of FtsH (HflB), the cII degrading protease, by HflKC (HflA).
Proceedings of the National Academy of Sciences of the United States of America 1997;94(11):5544-9.
1997: T Homma; T Yoshihisa; Koreaki Ito
Subunit interactions in the Escherichia coli protein translocase: SecE and SecG associate independently with SecY.
FEBS letters 1997;408(1):11-5.
1997: Masakatsu Sone; Yoshinori Akiyama; Koreaki Ito
Differential in vivo roles played by DsbA and DsbC in the formation of protein disulfide bonds.
The Journal of biological chemistry 1997;272(16):10349-52.
1997: Masakatsu Sone; S Kishigami; T Yoshihisa; Koreaki Ito
Roles of disulfide bonds in bacterial alkaline phosphatase.
The Journal of biological chemistry 1997;272(10):6174-8.