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Helen Causton

Research Profile

Devices

Oligonucleotide Array Sequence Analysis

Procedures

Gene Expression Profiling

Concepts & Ideas

Occupations

Computational Biology

Activities & Behaviors

Living Beings

Saccharomyces cerevisiae

Chemicals & Drugs

Physiology

Genes & Molecular Sequences

Genome, Fungal

Co-author Network

Publications

TOP 3
Patricia L Whetzel; Helen Parkinson; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Laurence Game; Mervi Heiskanen; Norman Morrison; Philippe Rocca-Serra; Susanna-Assunta Sansone; Chris Taylor; Joseph White; Christian J Stoeckert
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Tim Rayner; Philippe Rocca-Serra; Paul Spellman; Helen C Causton; Anna Farne; Ele Holloway; Rafael A Irizarry; Junmin Liu; Donald S Maier; Michael Miller; Kjell Petersen; John Quackenbush; Gavin Sherlock; Christian J Stoeckert; Joseph White; Patricia L Whetzel; Farrell Wymore; Helen Parkinson; Ugis Sarkans; Catherine A Ball; Alvis Brazma
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Development of FuGO: an ontology for functional genomics investigations.

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All Publications

2006: Patricia L Whetzel; Helen Parkinson; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Laurence Game; Mervi Heiskanen; Norman Morrison; Philippe Rocca-Serra; Susanna-Assunta Sansone; Chris Taylor; Joseph White; Christian J Stoeckert
The MGED Ontology: a resource for semantics-based description of microarray experiments.
Bioinformatics (Oxford, England) 2006;22(7):866-73.
2006: Tim Rayner; Philippe Rocca-Serra; Paul Spellman; Helen C Causton; Anna Farne; Ele Holloway; Rafael A Irizarry; Junmin Liu; Donald S Maier; Michael Miller; Kjell Petersen; John Quackenbush; Gavin Sherlock; Christian J Stoeckert; Joseph White; Patricia L Whetzel; Farrell Wymore; Helen Parkinson; Ugis Sarkans; Catherine A Ball; Alvis Brazma
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB.
BMC bioinformatics 2006;7():489.
2006: Patricia L Whetzel; Ryan R Brinkman; Helen C Causton; Liju Fan; Dawn Field; Jennifer Fostel; Gilberto Fragoso; Tanya Gray; Mervi Heiskanen; Tina Hernandez-Boussard; Norman Morrison; Helen Parkinson; Philippe Rocca-Serra; Susanna-Assunta Sansone; Daniel Schober; Barry Smith; Robert Stevens; Christian J Stoeckert; Chris Taylor; Joe White; Andrew Wood
Development of FuGO: an ontology for functional genomics investigations.
Omics : a journal of integrative biology 2006;10(2):199-204.
2006: Christian J Stoeckert; Catherine Ball; Alvis Brazma; Ryan Brinkman; Helen C Causton; Liju Fan; Jennifer Fostel; Gilberto Fragoso; Mervi Heiskanen; Frank C P Holstege; Norman Morrison; Helen Parkinson; John Quackenbush; Philippe Rocca-Serra; Susanna-Assunta Sansone; Ugis Sarkans; Gavin Sherlock; Robert Stevens; Chris Taylor; Ronald Taylor; Patricia L Whetzel; Joseph White
Wrestling with SUMO and bio-ontologies.
Nature biotechnology 2006;24(1):21-2; author reply 23.
2005: Anne-Mette K Hein; Sylvia Richardson; Helen C Causton; Graeme K Ambler; Peter J Green
BGX: a fully Bayesian integrated approach to the analysis of Affymetrix GeneChip data.
Biostatistics (Oxford, England) 2005;6(3):349-73.
2005: Norbert Hubner; Caroline A Wallace; Heike Zimdahl; Enrico Petretto; Herbert Schulz; Fiona Maciver; Michael Mueller; Oliver Hummel; Jan Monti; Vaclav Zidek; Alena Musilova; Vladimír Kren; Helen C Causton; Laurence Game; Gabriele Born; Sabine Schmidt; Anita Müller; Stuart A Cook; theodore kurtz; John Whittaker; Michal Pravenec; Timothy J Aitman
Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease.
Nature genetics 2005;37(3):243-53.
2005: Mahendra Navarange; Laurence Game; Derek Fowler; Vihar Wadekar; Helen Banks; Nicola Cooley; Fatimah Rahman; Justin Hinshelwood; Peter Broderick; Helen C Causton
MiMiR: a comprehensive solution for storage, annotation and exchange of microarray data.
BMC bioinformatics 2005;6():268.
2004: Catherine Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Carl Icahn; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
An open letter on microarray data from the MGED Society.
Microbiology (Reading, England) 2004;150(Pt 11):3522-4.
2004: Catherine A Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
Submission of microarray data to public repositories.
PLoS biology 2004;2(9):E317.
2004: Catherine Ball; Alvis Brazma; Helen C Causton; Steve Chervitz; Ron Edgar; Pascal Hingamp; John Matese; Helen Parkinson; John Quackenbush; Martin Ringwald; Susanna-Assunta Sansone; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; Yoshio Tateno; Ronald Taylor; Joseph White; Neil Winegarden
Standards for microarray data: an open letter.
Environmental health perspectives 2004;112(12):A666-7.
2003: Timothy J Kemp; Helen C Causton; Angela Clerk
Changes in gene expression induced by H(2)O(2) in cardiac myocytes.
Biochemical and biophysical research communications 2003;307(2):416-21.
2003: Wu-Cheng Shen; Sukesh R Bhaumik; Helen C Causton; Itamar Simon; Xiaochun Zhu; Ezra Jennings; Tseng-Hsing Wang; Richard A Young; Michael R Green
Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly.
The EMBO journal 2003;22(13):3395-402.
2003: Helen C Causton; Laurence Game
MGED comes of age.
Genome biology 2003;4(12):351.
2002: Christian J Stoeckert; Helen C Causton; Catherine A Ball
Microarray databases: standards and ontologies.
Nature genetics 2002;32 Suppl():469-73.
2002: Catherine A Ball; Gavin Sherlock; Helen Parkinson; Philippe Rocca-Sera; Catherine Brooksbank; Helen C Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C P Holstege; Martin Ringwald; Paul Spellman; Christian J Stoeckert; Jason E Stewart; Ronald Taylor; Alvis Brazma; John Quackenbush
The underlying principles of scientific publication.
Bioinformatics (Oxford, England) 2002;18(11):1409.
2002: Catherine A Ball; Gavin Sherlock; Helen Parkinson; Philippe Rocca-Sera; Catherine Brooksbank; Helen C Causton; Duccio Cavalieri; Terry Gaasterland; Pascal Hingamp; Frank C P Holstege; Martin Ringwald; Paul Spellman; Christian J Stoeckert; Jason E Stewart; Ronald Taylor; Alvis Brazma; John Quackenbush
Standards for microarray data.
Science (New York, N.Y.) 2002;298(5593):539.
2001: Alvis Brazma; Pascal Hingamp; John Quackenbush; Gavin Sherlock; Paul Spellman; Christian J Stoeckert; J Aach; W Ansorge; Catherine A Ball; Helen C Causton; Terry Gaasterland; P Glenisson; Frank C P Holstege; I F Kim; V Markowitz; John Matese; Helen Parkinson; Alan Robinson; Ugis Sarkans; S Schulze-Kremer; J Stewart; R Taylor; Jaak Vilo; Martin Vingron
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data.
Nature genetics 2001;29(4):365-71.
2001: Helen C Causton; Bing Ren; Sang Seok Koh; Christopher T Harbison; E Kanin; Ezra Jennings; Tong Ihn Lee; Heather True; Eric S Lander; Richard A Young
Remodeling of yeast genome expression in response to environmental changes.
Molecular biology of the cell 2001;12(2):323-37.
2000: Tong Ihn Lee; Helen C Causton; Frank C P Holstege; Wu-Cheng Shen; Nancy M Hannett; Ezra Jennings; fred winston; Michael R Green; Richard A Young
Redundant roles for the TFIID and SAGA complexes in global transcription.
Nature 2000;405(6787):701-4.
2000: L S Robertson; Helen C Causton; Richard A Young; Gerald R Fink
The yeast A kinases differentially regulate iron uptake and respiratory function.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(11):5984-8.
1999: John J Wyrick; Frank C P Holstege; Ezra Jennings; Helen C Causton; D Shore; M Grunstein; Eric S Lander; Richard A Young
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.
Nature 1999;402(6760):418-21.