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Jason Dillon Lieb

Research Profile

Chemicals & Drugs

Living Beings

Saccharomyces cerevisiae

Anatomy

Physiology

Genes & Molecular Sequences

Occupations

Genomics

Co-author Network

Publications

TOP 3
Lingyun Song; Teresa Vales; Tianyuan Wang; Deborah Winter; Zhancheng Zhang; Zhuzhu Zhang; Ewan Birney; Alan P Boyle; Neil D Clarke; Gregory E Crawford; Paul G Giresi; Stefan Gräf; Linda L Grasfeder; Mikael Huss; Vishwanath R Iyer; Damian Keefe; Bum-Kyu Lee; Jason Dillon Lieb; Zheng Liu; Darin London; Ryan M McDaniell; Nathan C Sheffield; Yoichiro Shibata; Kimberly A Showers; Jeremy M Simon; Terrence S Furey
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Andres R Mansisidor; Man-Wah Tan; Germano Cecere; Violeta Chavez; Sebastian Hoersch; Morten B Jensen; Trupti Kawli; Lisa M Kennedy; Jason Dillon Lieb; Alla Grishok
A conserved PHD finger protein and endogenous RNAi modulate insulin signaling in Caenorhabditis elegans.
Sevinç Ercan; Yaniv Lubling; Eran Segal; Jason Dillon Lieb
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.

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All Publications

2011: Lingyun Song; Teresa Vales; Tianyuan Wang; Deborah Winter; Zhancheng Zhang; Zhuzhu Zhang; Ewan Birney; Alan P Boyle; Neil D Clarke; Gregory E Crawford; Paul G Giresi; Stefan Gräf; Linda L Grasfeder; Mikael Huss; Vishwanath R Iyer; Damian Keefe; Bum-Kyu Lee; Jason Dillon Lieb; Zheng Liu; Darin London; Ryan M McDaniell; Nathan C Sheffield; Yoichiro Shibata; Kimberly A Showers; Jeremy M Simon; Terrence S Furey
Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity.
Genome research 2011;21(10):1757-67.
2011: Andres R Mansisidor; Man-Wah Tan; Germano Cecere; Violeta Chavez; Sebastian Hoersch; Morten B Jensen; Trupti Kawli; Lisa M Kennedy; Jason Dillon Lieb; Alla Grishok
A conserved PHD finger protein and endogenous RNAi modulate insulin signaling in Caenorhabditis elegans.
PLoS genetics 2011;7(9):e1002299.
2011: Sevinç Ercan; Yaniv Lubling; Eran Segal; Jason Dillon Lieb
High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans.
Genome research 2011;21(2):237-44.
2011: Tao Liu; Andreas Rechtsteiner; Thea A Egelhofer; Anne Vielle; Isabel Latorre; Ming-Sin Cheung; Sevinc Ercan; Kohta Ikegami; Morten Jensen; Paulina Kolasinska-Zwierz; Heidi Rosenbaum; Hyunjin Shin; Scott Taing; Teruaki Takasaki; A Leonardo Iniguez; Arshad Desai; Abby F Dernburg; Hiroshi Kimura; Jason Dillon Lieb; Julie Ahringer; Susan Strome; X Shirley Liu
Broad chromosomal domains of histone modification patterns in C. elegans.
Genome research 2011;21(2):227-36.
2011: Naim U Rashid; Wei Sun; Paul G Giresi; Joseph G Ibrahim; Jason Dillon Lieb
ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions.
Genome biology 2011;12(7):R67.
2011: Sean E Hanlon; Jason M Rizzo; Deirdre C Tatomer; Jason Dillon Lieb; Michael J Buck
The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.
PloS one 2011;6(4):e19060.
2011: Thea A Egelhofer; Aki Minoda; Sarit Klugman; Kyungjoon Lee; Paulina Kolasinska-Zwierz; Artyom A Alekseyenko; Ming-Sin Cheung; Daniel S Day; Sarah Gadel; Andrey A Gorchakov; Tingting Gu; Peter V Kharchenko; Samantha Kuan; Isabel Latorre; Daniela Linder-Basso; Ying Luu; Queminh Ngo; Marc David Perry; Andreas Rechtsteiner; Nicole C Riddle; Yuri B Schwartz; Gregory A Shanower; Anne Vielle; Julie Ahringer; Sarah C R Elgin; Mitzi I Kuroda; Vincenzo Pirrotta; Bing Ren; Susan Strome; Peter J Park; Gary H Karpen; R David Hawkins; Jason Dillon Lieb
An assessment of histone-modification antibody quality.
Nature structural & molecular biology 2011;18(1):91-3.
2010: Mark B Gerstein; Zhi John Lu; Eric L Van Nostrand; Chao Cheng; Bradley I Arshinoff; Tao Liu; Kevin Y Yip; Rebecca Robilotto; Andreas Rechtsteiner; Kohta Ikegami; Pedro Alves; Aurelien Chateigner; Marc David Perry; Mitzi Morris; Raymond K Auerbach; Xin Feng; Jing Leng; Anne Vielle; Wei Niu; Kahn Rhrissorrakrai; Ashish Agarwal; Roger P Alexander; Galt Barber; Cathleen M Brdlik; Jennifer Brennan; Jeremy Jean Brouillet; Adrian Carr; Ming-Sin Cheung; Hiram Clawson; Sergio Contrino; Luke O Dannenberg; Abby F Dernburg; Arshad Desai; Lindsay Dick; Andréa C Dosé; Jiang Du; Thea Egelhofer; Sevinc Ercan; Ghia Euskirchen; Brent Ewing; Elise A Feingold; Reto Gassmann; Peter J Good; Phil Green; Francois Gullier; Michelle Gutwein; Mark S Guyer; Lukas Habegger; Ting Han; Jorja G Henikoff; Stefan R Henz; Angie Hinrichs; Heather Holster; Tony Hyman; A Leo Iniguez; Judith Janette; Morten Jensen; Masaomi Kato; W James Kent; Ellen Kephart; Vishal Khivansara; Ekta Khurana; John K Kim; Paulina Kolasinska-Zwierz; Eric C Lai; Isabel Latorre; Amber Leahey; Suzanna Lewis; Paul Lloyd; Lucas Lochovsky; Rebecca F Lowdon; Yaniv Lubling; Rachel Lyne; Michael MacCoss; Sebastian D Mackowiak; Marco Mangone; Sheldon McKay; Desirea Mecenas; Gennifer Merrihew; David M Miller; Andrew Muroyama; John I Murray; Siew-Loon Ooi; Hoang Pham; Taryn Phippen; Elicia A Preston; Nikolaus Rajewsky; Gunnar Rätsch; Heidi Rosenbaum; Joel Rozowsky; Kim Rutherford; Peter Ruzanov; Mihail Sarov; Rajkumar Sasidharan; Andrea Sboner; Paul Scheid; Eran Segal; Hyunjin Shin; Chong Shou; Frank J Slack; Cindie Slightam; Richard Smith; William C Spencer; E O Stinson; Scott Taing; Teruaki Takasaki; Dionne Vafeados; Ksenia Voronina; Guilin Wang; Nicole L Washington; Christina M Whittle; Beijing Wu; Koon-Kiu Yan; Georg Zeller; Zheng Zha; Mei Zhong; Xingliang Zhou; Julie Ahringer; Susan Strome; Kristin C Gunsalus; Gos Micklem; X Shirley Liu; Valerie Reinke; Stuart K Kim; LaDeana W Hillier; Steven Henikoff; Fabio Piano; Michael Snyder; Lincoln Stein; Jason Dillon Lieb; Robert H Waterston
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.
Science (New York, N.Y.) 2010;330(6012):1775-87.
2010: Ewan Birney; Jason Dillon Lieb; Terrence S Furey; Gregory E Crawford; Vishwanath R Iyer
Allele-specific and heritable chromatin signatures in humans.
Human molecular genetics 2010;19(R2):R204-9.
2010: Claire Burns; Jason E Stajich; Andreas Rechtsteiner; Lorna Casselton; Sean E Hanlon; Sarah K Wilke; Oleksandr P Savytskyy; Allen C Gathman; Walt W Lilly; Jason Dillon Lieb; Miriam E Zolan; Patricia J Pukkila
Analysis of the Basidiomycete Coprinopsis cinerea reveals conservation of the core meiotic expression program over half a billion years of evolution.
PLoS genetics 2010;6(9):.
2010: Andreas Rechtsteiner; Sevinc Ercan; Teruaki Takasaki; Taryn M Phippen; Thea A Egelhofer; Wenchao Wang; Hiroshi Kimura; Jason Dillon Lieb; Susan Strome
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.
PLoS genetics 2010;6(9):.
2010: Noam Kaplan; Irene Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Timothy R Hughes; Jason Dillon Lieb; Jonathan Widom; Eran Segal
Nucleosome sequence preferences influence in vivo nucleosome organization.
Nature structural & molecular biology 2010;17(8):918-20; author reply 920-2.
2010: Ryan McDaniell; Bum-Kyu Lee; Lingyun Song; Zheng Liu; Alan P Boyle; Michael R Erdos; Laura J Scott; Mario A Morken; Katerina S Kucera; Anna Battenhouse; Damian Keefe; Francis S Collins; Huntington F Willard; Jason Dillon Lieb; Terrence S Furey; Gregory E Crawford; Vishwanath R Iyer; Ewan Birney
Heritable individual-specific and allele-specific chromatin signatures in humans.
Science (New York, N.Y.) 2010;328(5975):235-9.
2010: Housheng Hansen He; Clifford A Meyer; Hyunjin Shin; Shannon T Bailey; Gang Wei; Qianben Wang; Yong Zhang; Kexin Xu; Min Ni; Mathieu Lupien; Piotr A Mieczkowski; Jason Dillon Lieb; Keji Zhao; Myles Brown; X Shirley Liu
Nucleosome dynamics define transcriptional enhancers.
Nature genetics 2010;42(4):343-7.
2010: Kyle J Gaulton; Takao Nammo; Lorenzo Pasquali; Jeremy M Simon; Paul G Giresi; Marie P Fogarty; Tami M Panhuis; Piotr A Mieczkowski; Antonio Secchi; Domenico Bosco; Thierry Berney; Eduard Montanya; Karen L Mohlke; Jason Dillon Lieb; Jorge Ferrer
A map of open chromatin in human pancreatic islets.
Nature genetics 2010;42(3):255-9.
2010: Kohta Ikegami; Jason Dillon Lieb
Nucleoporins and transcription: new connections, new questions.
PLoS genetics 2010;6(2):e1000861.
2010: Kohta Ikegami; Thea A Egelhofer; Susan Strome; Jason Dillon Lieb
Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2.
Genome biology 2010;11(12):R120.
2010: Noam Kaplan; Timothy R Hughes; Jason Dillon Lieb; Jonathan Widom; Eran Segal
Contribution of histone sequence preferences to nucleosome organization: proposed definitions and methodology.
Genome biology 2010;11(11):140.
2010: Desiree Tillo; Noam Kaplan; Irene K Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Yair Field; Jason Dillon Lieb; Jonathan Widom; Eran Segal; Timothy R Hughes
High nucleosome occupancy is encoded at human regulatory sequences.
PloS one 2010;5(2):e9129.
2009: Luke E Berchowitz; Sean E Hanlon; Jason Dillon Lieb; Gregory Paul Copenhaver
A positive but complex association between meiotic double-strand break hotspots and open chromatin in Saccharomyces cerevisiae.
Genome research 2009;19(12):2245-57.
2009: Sevinç Ercan; Lindsay L Dick; Jason Dillon Lieb
The C. elegans dosage compensation complex propagates dynamically and independently of X chromosome sequence.
Current biology : CB 2009;19(21):1777-87.
2009: Christina M Whittle; Elena Lazakovitch; Richard M Gronostajski; Jason Dillon Lieb
DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(29):12049-54.
2009: Paul G Giresi; Jason Dillon Lieb
Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).
Methods (San Diego, Calif.) 2009;48(3):233-9.
2009: Anna Azvolinsky; Paul G Giresi; Jason Dillon Lieb; Virginia A Zakian
Highly transcribed RNA polymerase II genes are impediments to replication fork progression in Saccharomyces cerevisiae.
Molecular cell 2009;34(6):722-34.
2009: Susan E Celniker; Laura A L Dillon; Mark B Gerstein; Kristin C Gunsalus; Steven Henikoff; Gary Karpen; Manolis Kellis; Eric C Lai; Jason Dillon Lieb; David M MacAlpine; Gos Micklem; Fabio Piano; Michael Snyder; Lincoln Stein; Kevin P White; Robert H Waterston
Unlocking the secrets of the genome.
Nature 2009;459(7249):927-30.
2009: Dina A Faddah; Eric W Ganko; Caroline McCoach; Joseph K Pickrell; Sean E Hanlon; Frederick G Mann; Joanna O Mieczkowska; Corbin D Jones; Jason Dillon Lieb; Todd J Vision
Systematic identification of balanced transposition polymorphisms in Saccharomyces cerevisiae.
PLoS genetics 2009;5(6):e1000502.
2009: Yair Field; Yvonne Fondufe-Mittendorf; Irene K Moore; Piotr A Mieczkowski; Noam Kaplan; Yaniv Lubling; Jason Dillon Lieb; Jonathan Widom; Eran Segal
Gene expression divergence in yeast is coupled to evolution of DNA-encoded nucleosome organization.
Nature genetics 2009;41(4):438-45.
2009: Noam Kaplan; Irene K Moore; Yvonne Fondufe-Mittendorf; Andrea J Gossett; Desiree Tillo; Yair Field; Emily M LeProust; Timothy R Hughes; Jason Dillon Lieb; Jonathan Widom; Eran Segal
The DNA-encoded nucleosome organization of a eukaryotic genome.
Nature 2009;458(7236):362-6.
2009: Sevinc Ercan; Jason Dillon Lieb
C. elegans dosage compensation: a window into mechanisms of domain-scale gene regulation.
Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2009;17(2):215-27.
2009: Colin R Lickwar; Bhargavi Rao; Andrey A Shabalin; Andrew B Nobel; Brian D Strahl; Jason Dillon Lieb
The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency.
PloS one 2009;4(3):e4886.
2008: Gwenael Badis; Esther T Chan; Harm van Bakel; Lourdes Pena-Castillo; Desiree Tillo; Kyle Tsui; Clayton D Carlson; Andrea J Gossett; Michael J Hasinoff; Christopher L Warren; Marinella Gebbia; Shaheynoor Talukder; Ally Yang; Sanie Mnaimneh; Dimitri Terterov; David Coburn; Ai Li Yeo; Zhen Xuan Yeo; Neil D Clarke; Jason Dillon Lieb; Aseem Z Ansari; Corey Nislow; Timothy R Hughes
A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.
Molecular cell 2008;32(6):878-87.
2008: Sevinc Ercan; Jason Dillon Lieb
Chromatin proteins do double duty.
Cell 2008;133(5):763-5.
2008: David S Johnson; Wei LI; D Benjamin Gordon; Arindam Bhattacharjee; Bo Curry; Jayati Ghosh; leonardo brizuela; Jason S Carroll; Myles Brown; Paul Flicek; Christoph M Koch; Ian Dunham; Mark Bieda; Xiaoqin Xu; Peggy J Farnham; Philipp Kapranov; David A Nix; Thomas Gingeras; Xinmin Zhang; Heather Holster; Nan Jiang; Roland D Green; Jun S Song; Scott A McCuine; Elizabeth Anton; Loan Nguyen; Nathan D Trinklein; Zhen Ye; Keith Ching; David Hawkins; Bing Ren; Peter C Scacheri; Joel Rozowsky; Alexander Karpikov; Ghia Euskirchen; Sherman Weissman; Mark Gerstein; Michael Snyder; Annie Yang; Zarmik Moqtaderi; Heather A. Hirsch; Hennady P Shulha; Yutao Fu; Zhiping Weng; Kevin Struhl; Richard Myers; Jason Dillon Lieb; X Shirley Liu
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
Genome research 2008;18(3):393-403.
2008: Andrea J Gossett; Jason Dillon Lieb
DNA Immunoprecipitation (DIP) for the Determination of DNA-Binding Specificity.
CSH protocols 2008;2008():pdb.prot4972.
2008: Christina M Whittle; Karissa N McClinic; Sevinc Ercan; Xinmin Zhang; Roland D Green; William G Kelly; Jason Dillon Lieb
The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.
PLoS genetics 2008;4(9):e1000187.
2007: Warren P Voth; Yaxin Yu; Shinya Takahata; Kelsi L Kretschmann; Jason Dillon Lieb; Rebecca L Parker; Brett Milash; David J Stillman
Forkhead proteins control the outcome of transcription factor binding by antiactivation.
The EMBO journal 2007;26(20):4324-34.
2007: Jia Fang; Gregory J Hogan; Gaoyang Liang; Jason Dillon Lieb; Yi Zhang
The Saccharomyces cerevisiae histone demethylase Jhd1 fine-tunes the distribution of H3K36me2.
Molecular and cellular biology 2007;27(13):5055-65.
2007: Ewan Birney; John A Stamatoyannopoulos; Anindya Dutta; Roderic Guigó; Thomas Gingeras; Elliott H Margulies; Zhiping Weng; Michael Snyder; Emmanouil T Dermitzakis; Robert E Thurman; Michael S Kuehn; Christopher M Taylor; Shane Neph; Christoph M Koch; Saurabh Asthana; Ankit Malhotra; Ivan Adzhubei; Jason A Greenbaum; Robert M Andrews; Paul Flicek; Patrick J Boyle; Hua Cao; Nigel P Carter; Gayle K Clelland; Sean Davis; Nathan Day; Pawandeep Dhami; Shane C Dillon; Michael O Dorschner; Heike Fiegler; Paul G Giresi; Jeff Goldy; Michael Hawrylycz; Andrew Haydock; Richard Humbert; Keith D James; Brett E Johnson; Ericka M Johnson; Tristan T Frum; Elizabeth R Rosenzweig; Neerja Karnani; Kirsten Lee; Gregory C Lefebvre; Patrick A Navas; Fidencio Neri; Stephen C J Parker; Peter J Sabo; Richard Sandstrom; Anthony Shafer; David Vetrie; Molly Weaver; Sarah Wilcox; Man Yu; Francis S Collins; Job Dekker; Jason Dillon Lieb; Thomas D Tullius; Gregory E Crawford; Shamil Sunyaev; William S Noble; Ian Dunham; France Denoeud; Alexandre Reymond; Philipp Kapranov; Joel Rozowsky; Deyou Zheng; Robert Castelo; Adam Frankish; Jennifer Harrow; Srinka Ghosh; Albin Sandelin; Ivo L Hofacker; Robert Baertsch; Damian Keefe; Sujit Dike; Jill Cheng; Heather A. Hirsch; Edward A Sekinger; Julien Lagarde; Josep F Abril; Atif Shahab; Christoph Flamm; Claudia Fried; Jorg Hackermuller; Jana Hertel; Manja Lindemeyer; Kristin Missal; Andrea Tanzer; Stefan Washietl; Jan Korbel; Olof Emanuelsson; Jakob S Pedersen; Nancy Holroyd; Ruth Taylor; David Swarbreck; Nicholas Matthews; Mark C Dickson; Daryl J Thomas; Matthew T Weirauch; James Gilbert; Jorg Drenkow; Ian Bell; XiaoDong Zhao; K G Srinivasan; Wing-Kin Sung; Hong Sain Ooi; Kuo Ping Chiu; Sylvain Foissac; Tyler Alioto; Michael Brent; Lior Pachter; Michael L Tress; Alfonso Valencia; Siew Woh Choo; Chiou Yu Choo; Catherine Ucla; Caroline Manzano; Carine Wyss; Evelyn Cheung; Taane G Clark; James B Brown; Madhavan Ganesh; Sandeep Patel; Hari Tammana; Jacqueline Chrast; Charlotte N Henrichsen; Chikatoshi Kai; Jun Kawai; Ugrappa Nagalakshmi; Jiaqian Wu; Zheng Lian; Jin Lian; Peter Newburger; Xueqing Zhang; Peter Bickel; John S Mattick; piero carninci; Yoshihide Hayashizaki; Sherman Weissman; Tim Hubbard; Richard Myers; Jane Rogers; Peter F Stadler; Todd M Lowe; Chia-Lin Wei; Yijun Ruan; Kevin Struhl; Mark Gerstein; Stylianos Antonarakis; Yutao Fu; Eric Green; Ulaş Karaöz; Adam Siepel; James TAYLOR; Laura A Liefer; Kris A Wetterstrand; Peter J Good; Elise A Feingold; Mark S Guyer; Gregory Cooper; George Asimenos; Colin N Dewey; Minmei Hou; Sergey Nikolaev; Juan I Montoya-Burgos; Ari Löytynoja; Simon Whelan; Fabio Pardi; Tim Massingham; Haiyan Huang; Nancy R Zhang; Ian Holmes; James C Mullikin; Abel Ureta-Vidal; Benedict Paten; Michael Seringhaus; Deanna Church; Kate Rosenbloom; W James Kent; Eric A Stone; Serafim Batzoglou; Nick Goldman; Ross C Hardison; David Haussler; Webb Miller; Arend Sidow; Nathan D Trinklein; Zhengdong D Zhang; Leah Barrera; Rhona Stuart; David C King; Adam Ameur; Stefan Enroth; Mark C Bieda; Jonghwan Kim; Akshay A Bhinge; Nan Jiang; Jun Liu; Fei Yao; Vinsensius B Vega; Charlie W H Lee; Patrick Ng; Atif Shahab; Annie Yang; Zarmik Moqtaderi; Zhou Zhu; Xiaoqin Xu; Sharon Squazzo; Matthew J Oberley; David Inman; Michael A Singer; Richmond Todd; Kyle J Munn; Alvaro Rada-Iglesias; Ola Wallerman; Jan Komorowski; Joanna C Fowler; Phillippe Couttet; Alexander W Bruce; Oliver M Dovey; Peter D Ellis; Cordelia F Langford; David A Nix; Ghia Euskirchen; Stephen Hartman; Alexander E Urban; Peter Kraus; Sara Van Calcar; Nate Heintzman; Tae Hoon Kim; Kun Wang; Chunxu Qu; Gary Hon; Rosa Luna; Christopher K Glass; M Geoff Rosenfeld; Shelley Force Aldred; Sara J Cooper; Anason Halees; Jane M Lin; Hennady P Shulha; Xiaoling Zhang; Mousheng Xu; Jaafar N S Haidar; Yong Yu; Yijun Ruan; Vishwanath R Iyer; Roland D Green; Claes Wadelius; Peggy J Farnham; Bing Ren; Rachel A Harte; Angie S Hinrichs; Heather Trumbower; Hiram Clawson; Jennifer Hillman-Jackson; Ann S Zweig; Kayla Smith; Archana Thakkapallayil; Galt Barber; Robert M Kuhn; Donna Karolchik; Lluis Armengol; Christine P Bird; Paul I W de Bakker; Andrew D Kern; Nuria Lopez-Bigas; Joel D Martin; Barbara E Stranger; Abigail Woodroffe; Eugene Davydov; Antigone Dimas; Eduardo Eyras; Ingileif B Hallgrímsdóttir; Julian Huppert; Michael C Zody; Goncalo Abecasis; Xavier Estivill; Gerard G Bouffard; Xiaobin Guan; Nancy F Hansen; Jacquelyn R Idol; Valerie V B Maduro; Baishali Maskeri; Jennifer C McDowell; Morgan Park; Pamela J Thomas; Alice C Young; Robert W Blakesley; Donna M Muzny; Erica Sodergren; David A Wheeler; Kim C Worley; Huaiyang Jiang; George Weinstock; Richard A Gibbs; Tina Graves; Robert Fulton; Elaine R Mardis; Richard K Wilson; Michele Clamp; James Cuff; Sante Gnerre; David B Jaffe; Jean L Chang; Kerstin Lindblad-Toh; Eric S Lander; Maxim Koriabine; Mikhail Nefedov; Kazutoyo Osoegawa; Yuko Yoshinaga; Baoli Zhu; Pieter J de Jong
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature 2007;447(7146):799-816.
2007: Paul G Giresi; Jonghwan Kim; Ryan M McDaniell; Vishwanath R Iyer; Jason Dillon Lieb
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin.
Genome research 2007;17(6):877-85.
2007: Stephanie A Morris; Bhargavi Rao; Benjamin A Garcia; Sandra B Hake; Robert L Diaz; Jeffrey Shabanowitz; Donald F Hunt; C David Allis; Jason Dillon Lieb; Brian D Strahl
Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification.
The Journal of biological chemistry 2007;282(10):7632-40.
2007: Piotr A Mieczkowski; Margaret Dominska; Michael J Buck; Jason Dillon Lieb; Thomas D Petes
Loss of a histone deacetylase dramatically alters the genomic distribution of Spo11p-catalyzed DNA breaks in Saccharomyces cerevisiae.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(10):3955-60.
2007: Sevinc Ercan; Paul G Giresi; Christina M Whittle; Xinmin Zhang; Roland D Green; Jason Dillon Lieb
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.
Nature genetics 2007;39(3):403-8.
2007: Tiao Jiang Xiao; Yoichiro Shibata; Bhargavi Rao; Ronald Laribee; Rose O'Rourke; Michael J Buck; Jack F Greenblatt; Nevan J Krogan; Jason Dillon Lieb; Brian D Strahl
The RNA polymerase II kinase Ctk1 regulates positioning of a 5' histone methylation boundary along genes.
Molecular and cellular biology 2007;27(2):721-31.
2006: Michael J Buck; Jason Dillon Lieb
A chromatin-mediated mechanism for specification of conditional transcription factor targets.
Nature genetics 2006;38(12):1446-51.
2006: Xiao Liu; Cheol-Koo Lee; Joshua A Granek; Neil D Clarke; Jason Dillon Lieb
Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection.
Genome research 2006;16(12):1517-28.
2006: Sevinc Ercan; Jason Dillon Lieb
New evidence that DNA encodes its packaging.
Nature genetics 2006;38(10):1104-5.
2006: Gregory J Hogan; Cheol-Koo Lee; Jason Dillon Lieb
Cell cycle-specified fluctuation of nucleosome occupancy at gene promoters.
PLoS genetics 2006;2(9):e158.
2006: Paul G Giresi; Jason Dillon Lieb
How to find an opening (or lots of them).
Nature methods 2006;3(7):501-2.
2006: Paul G Giresi; Mayetri Gupta; Jason Dillon Lieb
Regulation of nucleosome stability as a mediator of chromatin function.
Current opinion in genetics & development 2006;16(2):171-6.
2006: Piotr A Mieczkowski; Margaret Dominska; Michael J Buck; Jennifer L Gerton; Jason Dillon Lieb; Thomas D Petes
Global analysis of the relationship between the binding of the Bas1p transcription factor and meiosis-specific double-strand DNA breaks in Saccharomyces cerevisiae.
Molecular and cellular biology 2006;26(3):1014-27.
2006: Jason Dillon Lieb; S Beck; M L Bulyk; Peggy J Farnham; N Hattori; S Henikoff; X S Liu; K Okumura; K Shiota; T Ushijima; John M Greally
Applying whole-genome studies of epigenetic regulation to study human disease.
Cytogenetic and genome research 2006;114(1):1-15.
2005: Jason Dillon Lieb; Neil D Clarke
Control of transcription through intragenic patterns of nucleosome composition.
Cell 2005;123(7):1187-90.
2005: Bhargavi Rao; Yoichiro Shibata; Brian D Strahl; Jason Dillon Lieb
Dimethylation of histone H3 at lysine 36 demarcates regulatory and nonregulatory chromatin genome-wide.
Molecular and cellular biology 2005;25(21):9447-59.
2005: Jason Dillon Lieb
Out with the old, in with the new.
Nature genetics 2005;37(10):1024-5.
2005: Xiao Liu; David M Noll; Jason Dillon Lieb; Neil D Clarke
DIP-chip: rapid and accurate determination of DNA-binding specificity.
Genome research 2005;15(3):421-7.
2005: Michael J Buck; Andrew B Nobel; Jason Dillon Lieb
ChIPOTle: a user-friendly tool for the analysis of ChIP-chip data.
Genome biology 2005;6(11):R97.
2004: Sean E Hanlon; Jason Dillon Lieb
Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays.
Current opinion in genetics & development 2004;14(6):697-705.
2004: Cheol-Koo Lee; Yoichiro Shibata; Bhargavi Rao; Brian D Strahl; Jason Dillon Lieb
Evidence for nucleosome depletion at active regulatory regions genome-wide.
Nature genetics 2004;36(8):900-5.
2004: Michael J Buck; Jason Dillon Lieb
ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments.
Genomics 2004;83(3):349-60.
2003: Peter L Nagy; Michael L Cleary; Patrick O Brown; Jason Dillon Lieb
Genomewide demarcation of RNA polymerase II transcription units revealed by physical fractionation of chromatin.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(11):6364-9.
2003: Erin M Conlon; Xiaole (Shirley) Liu; Jason Dillon Lieb; Jun Liu
Integrating regulatory motif discovery and genome-wide expression analysis.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(6):3339-44.
2003: Jason Dillon Lieb
Genome-wide mapping of protein-DNA interactions by chromatin immunoprecipitation and DNA microarray hybridization.
Methods in molecular biology (Clifton, N.J.) 2003;224():99-109.
2002: Diana S Chu; Heather E Dawes; Jason Dillon Lieb; Raymond Chan; Annie F Kuo; Barbara J Meyer
A molecular link between gene-specific and chromosome-wide transcriptional repression.
Genes & development 2002;16(7):796-805.
2001: Jason Dillon Lieb; X Liu; David Botstein; Patrick O Brown
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.
Nature genetics 2001;28(4):327-34.
2000: Jason Dillon Lieb; Carlos Ortiz de Solorzano; E G Rodriguez; Arthur Jones; M Angelo; Stephen J Lockett; Barbara J Meyer
The Caenorhabditis elegans dosage compensation machinery is recruited to X chromosome DNA attached to an autosome.
Genetics 2000;156(4):1603-21.
1998: Jason Dillon Lieb; M R Albrecht; P T Chuang; Barbara J Meyer
MIX-1: an essential component of the C. elegans mitotic machinery executes X chromosome dosage compensation.
Cell 1998;92(2):265-77.
1996: P T Chuang; Jason Dillon Lieb; Barbara J Meyer
Sex-specific assembly of a dosage compensation complex on the nematode X chromosome.
Science (New York, N.Y.) 1996;274(5293):1736-9.
1996: Jason Dillon Lieb; E E Capowski; P Meneely; Barbara J Meyer
DPY-26, a link between dosage compensation and meiotic chromosome segregation in the nematode.
Science (New York, N.Y.) 1996;274(5293):1732-6.