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Xinmin Zhang

Research Profile

Chemicals & Drugs

Living Beings

Mouse
Rats

Genes & Molecular Sequences

Devices

Oligonucleotide Array Sequence Analysis

Anatomy

Procedures

Chromatin Immunoprecipitation

Physiology

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Publications

TOP 3
R David Hawkins; Gary C Hon; Sarit Klugman; Samantha Kuan; Leonard K Lee; Hui Liu; Victor V Lobanenkov; Que-Minh Ngo; Jessica E Antosiewicz-Bourget; Keith A Ching; Lee E Edsall; Roland D Green; Ron Stewart; James A Thomson; Chuhu Yang; Zhen Ye; Pengzhi Yu; Xinmin Zhang; Bing Ren
Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.
Stefan Taudien; Xinmin Zhang; Marius Felder; Marco Groth; Jochen Hampe; Klaus Huse; Andreas Petzold; Francesca Raffaelli; Philip Rosenstiel; Stefan Schreiber; Karol Szafranski; Matthias Platzer
Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.
Edgar Otto; Toby W Hurd; Rannar Airik; Moumita Chaki; Weibin Zhou; Corinne Stoetzel; Suresh B Patil; Shawn Levy; Amiya K Ghosh; Carlos A Murga-Zamalloa; Jeroen van Reeuwijk; Stef J F Letteboer; Liyun Sang; Rachel H Giles; Qin Liu; Karlien L M Coene; Alejandro Estrada-Cuzcano; Rob W J Collin; Heather M McLaughlin; Susanne Held; Jennifer M Kasanuki; Gokul Ramaswami; Jinny Conte; Irma Lopez; Joseph Washburn; James Macdonald; Jinghua Hu; Yukiko Yamashita; Eamonn R Maher; Lisa M Guay-Woodford; Hartmut P H Neumann; Nicholas Obermüller; Robert K Koenekoop; Carsten Bergmann; Xiaoshu Bei; Richard A Lewis; Nicholas Katsanis; Vanda Lopes; David S Williams; Robert H Lyons Jr; Chi Dang; Daniela A Brito; Mónica Bettencourt Dias; Xinmin Zhang; James Cavalcoli; Gudrun Nürnberg; Peter Nürnberg; Eric A Pierce; Peter K Jackson; Corinne Antignac; Sophie Saunier; Ronald Roepman; Helene Dollfus; Hemant Khanna; Friedhelm Hildebrandt
Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy.

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All Publications

2011: R David Hawkins; Gary C Hon; Sarit Klugman; Samantha Kuan; Leonard K Lee; Hui Liu; Victor V Lobanenkov; Que-Minh Ngo; Jessica E Antosiewicz-Bourget; Keith A Ching; Lee E Edsall; Roland D Green; Ron Stewart; James A Thomson; Chuhu Yang; Zhen Ye; Pengzhi Yu; Xinmin Zhang; Bing Ren
Dynamic chromatin states in human ES cells reveal potential regulatory sequences and genes involved in pluripotency.
Cell research 2011;21(10):1393-409.
2011: Stefan Taudien; Xinmin Zhang; Marius Felder; Marco Groth; Jochen Hampe; Klaus Huse; Andreas Petzold; Francesca Raffaelli; Philip Rosenstiel; Stefan Schreiber; Karol Szafranski; Matthias Platzer
Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.
BMC genomics 2011;12(1):243.
2010: Edgar Otto; Toby W Hurd; Rannar Airik; Moumita Chaki; Weibin Zhou; Corinne Stoetzel; Suresh B Patil; Shawn Levy; Amiya K Ghosh; Carlos A Murga-Zamalloa; Jeroen van Reeuwijk; Stef J F Letteboer; Liyun Sang; Rachel H Giles; Qin Liu; Karlien L M Coene; Alejandro Estrada-Cuzcano; Rob W J Collin; Heather M McLaughlin; Susanne Held; Jennifer M Kasanuki; Gokul Ramaswami; Jinny Conte; Irma Lopez; Joseph Washburn; James Macdonald; Jinghua Hu; Yukiko Yamashita; Eamonn R Maher; Lisa M Guay-Woodford; Hartmut P H Neumann; Nicholas Obermüller; Robert K Koenekoop; Carsten Bergmann; Xiaoshu Bei; Richard A Lewis; Nicholas Katsanis; Vanda Lopes; David S Williams; Robert H Lyons Jr; Chi Dang; Daniela A Brito; Mónica Bettencourt Dias; Xinmin Zhang; James Cavalcoli; Gudrun Nürnberg; Peter Nürnberg; Eric A Pierce; Peter K Jackson; Corinne Antignac; Sophie Saunier; Ronald Roepman; Helene Dollfus; Hemant Khanna; Friedhelm Hildebrandt
Candidate exome capture identifies mutation of SDCCAG8 as the cause of a retinal-renal ciliopathy.
Nature genetics 2010;42(10):840-50.
2010: Lan-Szu Chou; C-S Jonathan Liu; Benjamin Boese; Xinmin Zhang; Rong Mao
DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: neurofibromatosis type 1 gene as a model.
Clinical chemistry 2010;56(1):62-72.
2009: Mayumi Oda; Jacob L Glass; Reid F Thompson; Yongkai Mo; Emmanuel N Olivier; Maria E Figueroa; Rebecca R Selzer; Todd A Richmond; Xinmin Zhang; Luke Dannenberg; Roland D Green; Ari Melnick; Eli Hatchwell; Eric E Bouhassira; Amit Verma; Masako Suzuki; John M Greally
High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers.
Nucleic acids research 2009;37(12):3829-39.
2009: Haibo Sha; Yin He; Hui Chen; Cindy Wang; Anna Zenno; Hang Shi; Xiaoyong Yang; Xinmin Zhang; Ling Qi
The IRE1alpha-XBP1 pathway of the unfolded protein response is required for adipogenesis.
Cell metabolism 2009;9(6):556-64.
2009: Nathaniel D Heintzman; Gary C Hon; R. David Hawkins; Pouya Kheradpour; Alexander Stark; Lindsey F Harp; Zhen Ye; Leonard K Lee; Rhona K Stuart; Christina W Ching; Keith A Ching; Jessica E Antosiewicz-Bourget; Hui Liu; Xinmin Zhang; Roland D Green; Victor V Lobanenkov; Ron Stewart; James A Thomson; Gregory E Crawford; Manolis Kellis; Bing Ren
Histone modifications at human enhancers reflect global cell-type-specific gene expression.
Nature 2009;459(7243):108-12.
2009: Ling Qi; Maziyar Saberi; Erik Zmuda; Yiguo Wang; Judith Y Altarejos; Xinmin Zhang; Renaud Dentin; Susie Hedrick; Gautam Bandyopadhyay; Tsonwin Hai; Jerry Olefsky; Marc Montminy
Adipocyte CREB promotes insulin resistance in obesity.
Cell metabolism 2009;9(3):277-86.
2009: Dale J Hedges; Dale Hedges; Dan Burges; Eric Powell; Cherylyn Almonte; Jia Huang; Stuart Young; Benjamin Boese; Mike Schmidt; Margaret Pericak-Vance; Eden R Martin; Xinmin Zhang; Timothy T Harkins; Stephan Zuchner
Exome sequencing of a multigenerational human pedigree.
PloS one 2009;4(12):e8232.
2008: Yong Cheng; David C King; Lou Dore; Xinmin Zhang; Yuepin Zhou; Ying Zhang; Christine Dorman; Demesew Abebe; Swathi A Kumar; Francesca Chiaromonte; Webb Miller; Roland D Green; Mitchell J Weiss; Ross C Hardison
Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif.
Genome research 2008;18(12):1896-905.
2008: Fatih Ozsolak; Laura L Poling; Zhengxin Wang; Hui Liu; Xiaole (Shirley) Liu; Robert G Roeder; Xinmin Zhang; Jun S Song; David E Fisher
Chromatin structure analyses identify miRNA promoters.
Genes & development 2008;22(22):3172-83.
2008: David S Johnson; Wei LI; D Benjamin Gordon; Arindam Bhattacharjee; Bo Curry; Jayati Ghosh; leonardo brizuela; Jason S Carroll; Myles Brown; Paul Flicek; Christoph M Koch; Ian Dunham; Mark Bieda; Xiaoqin Xu; Peggy J Farnham; Philipp Kapranov; David A Nix; Thomas Gingeras; Xinmin Zhang; Heather Holster; Nan Jiang; Roland D Green; Jun S Song; Scott A McCuine; Elizabeth Anton; Loan Nguyen; Nathan D Trinklein; Zhen Ye; Keith Ching; David Hawkins; Bing Ren; Peter C Scacheri; Joel Rozowsky; Alexander Karpikov; Ghia Euskirchen; Sherman Weissman; Mark Gerstein; Michael Snyder; Annie Yang; Zarmik Moqtaderi; Heather A. Hirsch; Hennady P Shulha; Yutao Fu; Zhiping Weng; Kevin Struhl; Richard Myers; Jason Dillon Lieb; X Shirley Liu
Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets.
Genome research 2008;18(3):393-403.
2008: Christina M Whittle; Karissa N McClinic; Sevinc Ercan; Xinmin Zhang; Roland D Green; William G Kelly; Jason Dillon Lieb
The genomic distribution and function of histone variant HTZ-1 during C. elegans embryogenesis.
PLoS genetics 2008;4(9):e1000187.
2007: Luis G Acevedo; A Leonardo Iniguez; Heather L Holster; Xinmin Zhang; Roland Green; Peggy J Farnham
Genome-scale ChIP-chip analysis using 10,000 human cells.
BioTechniques 2007;43(6):791-7.
2007: Xiaohong Zhang; Xinmin Zhang; Stuart Firestein
Comparative genomics of odorant and pheromone receptor genes in rodents.
Genomics 2007;89(4):441-50.
2007: Tibor Rauch; Zunde Wang; Xinmin Zhang; Xueyan Zhong; Xiwei Wu; Sean K Lau; Kemp H Kernstine; Arthur D Riggs; Gerd P Pfeifer
Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(13):5527-32.
2007: Sevinc Ercan; Paul G Giresi; Christina M Whittle; Xinmin Zhang; Roland D Green; Jason Dillon Lieb
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation.
Nature genetics 2007;39(3):403-8.
2007: Jun S Song; W Evan Johnson; Xiaopeng Zhu; Xinmin Zhang; Wei Li; Arjun K Manrai; Jun Liu; Runsheng Chen; Xiaole (Shirley) Liu
Model-based analysis of two-color arrays (MA2C).
Genome biology 2007;8(8):R178.
2005: Gianluca Canettieri; Seung-Hoi Koo; Rebecca Berdeaux; Jose Heredia; Susan Hedrick; Xinmin Zhang; Marc Montminy
Dual role of the coactivator TORC2 in modulating hepatic glucose output and insulin signaling.
Cell metabolism 2005;2(5):331-8.
2005: Seung-Hoi Koo; Lawrence Flechner; Ling Qi; Xinmin Zhang; Robert A Screaton; Shawn Jeffries; Susan Hedrick; Wu Xu; Fayçal Boussouar; Paul K Brindle; Hiroshi Takemori; Marc Montminy
The CREB coactivator TORC2 is a key regulator of fasting glucose metabolism.
Nature 2005;437(7062):1109-11.
2005: Xinmin Zhang; Duncan T Odom; Seung-Hoi Koo; Michael D Conkright; Gianluca Canettieri; Jennifer Best; Huaming Chen; Richard G Jenner; Elizabeth Herbolsheimer; Elizabeth Jacobsen; Shilpa Kadam; SD MA; Beverly M Emerson; John B Hogenesch; Terry G Unterman; Richard A Young; Marc Montminy
Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(12):4459-64.
2004: Xinmin Zhang; Matthew Rogers; Huikai Tian; Xiaohong Zhang; Dong-Jing Zou; Jian Liu; Minghong Ma; Gordon M Shepherd; Stuart Firestein
High-throughput microarray detection of olfactory receptor gene expression in the mouse.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(39):14168-73.
2004: Xinmin Zhang; ivan rodriguez; Peter Mombaerts; Stuart Firestein
Odorant and vomeronasal receptor genes in two mouse genome assemblies.
Genomics 2004;83(5):802-11.
2004: Ricardo C. Araneda; Zita Peterlin; Xinmin Zhang; Alexander T Chesler; Stuart Firestein
A pharmacological profile of the aldehyde receptor repertoire in rat olfactory epithelium.
The Journal of physiology 2004;555(Pt 3):743-56.
2004: Marc Montminy; Seung-Hoi Koo; Xinmin Zhang
The CREB family: key regulators of hepatic metabolism.
Annales d'endocrinologie 2004;65(1):73-5.
2003: Agatha H Liu; Xinmin Zhang; Gustavo Stolovitzky; Andrea Califano; Stuart Firestein
Motif-based construction of a functional map for mammalian olfactory receptors.
Genomics 2003;81(5):443-56.
2002: Xinmin Zhang; Stuart Firestein
The olfactory receptor gene superfamily of the mouse.
Nature neuroscience 2002;5(2):124-33.
2002: Lidija Ivic; Cen Zhang; Xinmin Zhang; Sung Ok Yoon; Stuart Firestein
Intracellular trafficking of a tagged and functional mammalian olfactory receptor.
Journal of neurobiology 2002;50(1):56-68.
1999: T Lu; B Nguyen; Xinmin Zhang; Jerry Yang
Architecture of a K+ channel inner pore revealed by stoichiometric covalent modification.
Neuron 1999;22(3):571-80.