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John Lute Markley

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Helen M Berman; Gerard J Kleywegt; Haruki Nakamura; John Lute Markley
The Protein Data Bank at 40: reflecting on the past to prepare for the future.
Jin Hae Kim; Marco Tonelli; John Lute Markley
Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase.
Jurgen F Doreleijers; John Lute Markley; Christopher Schulte; Eldon L Ulrich; Wim Vranken; Gert Vriend; Geerten W Vuister
NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.

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All Publications

2012: Helen M Berman; Gerard J Kleywegt; Haruki Nakamura; John Lute Markley
The Protein Data Bank at 40: reflecting on the past to prepare for the future.
Structure (London, England : 1993) 2012;20(3):391-6.
2012: Jin Hae Kim; Marco Tonelli; John Lute Markley
Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase.
Proceedings of the National Academy of Sciences of the United States of America 2012;109(2):454-9.
2012: Jurgen F Doreleijers; John Lute Markley; Christopher Schulte; Eldon L Ulrich; Wim Vranken; Gert Vriend; Geerten W Vuister
NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB.
Nucleic acids research 2012;40(Database issue):D519-24.
2012: Prashant Rajbhandari; Kelley J Kadunc; Stephanie J Ellison-Zelski; Kun Ping Lu; Sarata C Sahu; Greg Finn; Natalia M Solodin; Sandra Z Haslam; Anastasia Kariagina; John Lute Markley; Kiran K Singarapu; Elaine T Alarid
Regulation of estrogen receptor α N-terminus conformation and function by peptidyl prolyl isomerase Pin1.
Molecular and cellular biology 2012;32(2):445-57.
2011: Kiran K Singarapu; Marco Tonelli; William M Westler; Fariba M Assadi-Porter; Jinge Zhu; Hector F DeLuca; Hongyu Rao; John Lute Markley
Ligand-specific structural changes in the vitamin D receptor in solution.
Biochemistry 2011;50(51):11025-33.
2011: Kiran K Singarapu; Ronnie O Frederick; William M Westler; Darius C Chow; Marco Tonelli; John Lute Markley
Structural characterization of Hsp12, the heat shock protein from Saccharomyces cerevisiae, in aqueous solution where it is intrinsically disordered and in detergent micelles where it is locally α-helical.
The Journal of biological chemistry 2011;286(50):43447-53.
2011: Kaifeng Hu; James J Ellinger; Roger A Chylla; John Lute Markley
Measurement of absolute concentrations of individual compounds in metabolite mixtures by gradient-selective time-zero 1H-13C HSQC with two concentration references and fast maximum likelihood reconstruction analysis.
Analytical chemistry 2011;83(24):9352-60.
2011: Marco Tonelli; Yuko Matsubara; Sarata C Sahu; Kiran K Singarapu; Yaeta Endo; Masatsune Kainosho; Shin-ichi Makino; John Lute Markley
Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition.
Journal of biomolecular NMR 2011;51(4):467-76.
2011: Sannali M Dittli; John Lute Markley; Marianna Max; Jeniffer Quijada; Hongyu Rao; Marco Tonelli; Fariba Assadi-Porter; Emeline Maillet
Structural role of the terminal disulfide bond in the sweetness of brazzein.
Chemical senses 2011;36(9):821-30.
2011: Kaifeng Hu; Tim S Bugni; Thomas P Wyche; John Lute Markley
Selective quantification by 2D HSQC0 spectroscopy of thiocoraline in an extract from a sponge-derived Verrucosispora sp.
Journal of natural products 2011;74(10):2295-8.
2011: Roger A Chylla; James J Ellinger; Kaifeng Hu; John Lute Markley
Deconvolution of two-dimensional NMR spectra by fast maximum likelihood reconstruction: application to quantitative metabolomics.
Analytical chemistry 2011;83(12):4871-80.
2011: Woonghee Lee; Jin Hae Kim; William M Westler; John Lute Markley
PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination.
Bioinformatics (Oxford, England) 2011;27(12):1727-8.
2011: James J Ellinger; Ian A Lewis; John Lute Markley
Role of aminotransferases in glutamate metabolism of human erythrocytes.
Journal of biomolecular NMR 2011;49(3-4):221-9.
2011: Kaifeng Hu; William M Westler; John Lute Markley
Two-dimensional concurrent HMQC-COSY as an approach for small molecule chemical shift assignment and compound identification.
Journal of biomolecular NMR 2011;49(3-4):291-6.
2011: Mitsuhiro Takeda; Klaas Hallenga; Masahiro Shigezane; Markus Waelchli; Frank Löhr; John Lute Markley; Masatsune Kainosho
Construction and performance of an NMR tube with a sample cavity formed within magnetic susceptibility-matched glass.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2011;209(2):167-73.
2011: Kaifeng Hu; William M Westler; John Lute Markley
Simultaneous quantification and identification of individual chemicals in metabolite mixtures by two-dimensional extrapolated time-zero (1)H-(13)C HSQC (HSQC(0)).
Journal of the American Chemical Society 2011;133(6):1662-5.
2011: William M Westler; I-Jin Lin; András Perczel; Frank Weinhold; John Lute Markley
Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.
Journal of the American Chemical Society 2011;133(5):1310-6.
2011: William C Hallows; Wei Yu; Brian C Smith; Mark K Devries; Mark K Devires; James J Ellinger; Shinichi Someya; Michael R Shortreed; Tomas A Prolla; John Lute Markley; Lloyd M Smith; Shimin Zhao; Kun-Liang Guan; John M Denu
Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restriction.
Molecular cell 2011;41(2):139-49.
2011: Anna K Füzéry; Jenny J Oh; Dennis T Ta; Larry E Vickery; John Lute Markley
Three hydrophobic amino acids in Escherichia coli HscB make the greatest contribution to the stability of the HscB-IscU complex.
BMC biochemistry 2011;12():3.
2010: Mohammad A Qasim; Jikui Song; John Lute Markley; Michael Laskowski
Cleavage of peptide bonds bearing ionizable amino acids at P(1) by serine proteases with hydrophobic S(1) pocket.
Biochemical and biophysical research communications 2010;400(4):507-10.
2010: Muniasamy Neerathilingam; John Lute Markley
Auto-induction medium containing glyphosate for high-level incorporation of unusual aromatic amino acids into proteins.
BioTechniques 2010;49(3):659-61.
2010: Kuang-Lung Hsueh; William M Westler; John Lute Markley
NMR investigations of the Rieske protein from Thermus thermophilus support a coupled proton and electron transfer mechanism.
Journal of the American Chemical Society 2010;132(23):7908-18.
2010: Ian A Lewis; Ryan H Karsten; Mark E Norton; Marco Tonelli; William M Westler; John Lute Markley
NMR method for measuring carbon-13 isotopic enrichment of metabolites in complex solutions.
Analytical chemistry 2010;82(11):4558-63.
2010: Kiran K Singarapu; James T Radek; Marco Tonelli; John Lute Markley; Que Lan
Differences in the structure and dynamics of the apo- and palmitate-ligated forms of Aedes aegypti sterol carrier protein 2 (AeSCP-2).
The Journal of biological chemistry 2010;285(22):17046-53.
2010: Fariba M Assadi-Porter; Emeline Maillet; James T Radek; Jeniffer Quijada; John Lute Markley; Marianna Max
Key amino acid residues involved in multi-point binding interactions between brazzein, a sweet protein, and the T1R2-T1R3 human sweet receptor.
Journal of molecular biology 2010;398(4):584-99.
2010: Brian Goodfellow; Iven C N Duarte; Anjos L Macedo; Brian F Volkman; Sofia G Nunes; Isabel Moura; John Lute Markley; José J G Moura
An NMR structural study of nickel-substituted rubredoxin.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2010;15(3):409-20.
2010: Fariba M Assadi-Porter; Marco Tonelli; Emeline Maillet; John Lute Markley; Marianna Max
Interactions between the human sweet-sensing T1R2-T1R3 receptor and sweeteners detected by saturation transfer difference NMR spectroscopy.
Biochimica et biophysica acta 2010;1798(2):82-6.
2010: Helen M Berman; Gerard J Kleywegt; Haruki Nakamura; John Lute Markley; Stephen K Burley
Safeguarding the integrity of protein archive.
Nature 2010;463(7280):425.
2010: Gregory A Zornetzer; Justinn Tanem; Brian G Fox; John Lute Markley
The length of the bound fatty acid influences the dynamics of the acyl carrier protein and the stability of the thioester bond.
Biochemistry 2010;49(3):470-7.
2010: Andrew T Ulijasz; Gabriel Cornilescu; Claudia C Cornilescu; Junrui Zhang; Mario Rivera; John Lute Markley; Richard D Vierstra
Structural basis for the photoconversion of a phytochrome to the activated Pfr form.
Nature 2010;463(7278):250-4.
2010: Shin-ichi Makino; Michael A Goren; Brian G Fox; John Lute Markley
Cell-free protein synthesis technology in NMR high-throughput structure determination.
Methods in molecular biology (Clifton, N.J.) 2010;607():127-47.
2009: Ian A Lewis; Seth C Schommer; John Lute Markley
rNMR: open source software for identifying and quantifying metabolites in NMR spectra.
Magnetic resonance in chemistry : MRC 2009;47 Suppl 1():S123-6.
2009: Jurgen F Doreleijers; Wim Vranken; Christopher Schulte; Jundong Lin; Jonathan R Wedell; Christopher J Penkett; Geerten W Vuister; Gert Vriend; John Lute Markley; Eldon L Ulrich
The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries.
Journal of biomolecular NMR 2009;45(4):389-96.
2009: Ian A Lewis; M Estela Campanella; John Lute Markley; Philip S Low
Role of band 3 in regulating metabolic flux of red blood cells.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(44):18515-20.
2009: I-Jin Lin; Bin Xia; David S King; Timothy E Machonkin; William M Westler; John Lute Markley
Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification.
Journal of the American Chemical Society 2009;131(42):15555-63.
2009: Marco Tonelli; Larry R Masterson; Gabriel Cornilescu; John Lute Markley; Gianluigi Veglia
One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements.
Journal of the American Chemical Society 2009;131(40):14138-9.
2009: Woonghee Lee; William M Westler; Arash Bahrami; Hamid R Eghbalnia; John Lute Markley
PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy.
Bioinformatics (Oxford, England) 2009;25(16):2085-7.
2009: Jin Hae Kim; Anna K Füzéry; Marco Tonelli; Dennis T Ta; William M Westler; Larry E Vickery; John Lute Markley
Structure and dynamics of the iron-sulfur cluster assembly scaffold protein IscU and its interaction with the cochaperone HscB.
Biochemistry 2009;48(26):6062-71.
2009: Liya Wang; John Lute Markley
Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing.
Journal of biomolecular NMR 2009;44(2):95-9.
2009: Gaetano T Montelione; Cheryl Arrowsmith; Mark E Girvin; Michael A Kennedy; John Lute Markley; Robert Powers; James H Prestegard; Thomas Szyperski
Unique opportunities for NMR methods in structural genomics.
Journal of structural and functional genomics 2009;10(2):101-6.
2009: John Lute Markley; David Aceti; Craig A Bingman; Brian G Fox; Ronnie O Frederick; Shin-ichi Makino; Karl W Nichols; George N Phillips; John G Primm; Sarata C Sahu; Frank C Vojtik; Brian F Volkman; Russell L Wrobel; Zsolt Zolnai
The Center for Eukaryotic Structural Genomics.
Journal of structural and functional genomics 2009;10(2):165-79.
2009: Arash Bahrami; Amir H Assadi; John Lute Markley; Hamid R Eghbalnia
Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy.
PLoS computational biology 2009;5(3):e1000307.
2008: Mitsuhiro Takeda; Nozomi Sugimori; Takuya Torizawa; Tsutomu Terauchi; Akira M Ono; Hirokazu Yagi; Yoshiki Yamaguchi; Koichi Kato; Teppei Ikeya; Jungoo Jee; Peter Güntert; David Aceti; John Lute Markley; Masatsune Kainosho
Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.
The FEBS journal 2008;275(23):5873-84.
2008: Gabriel Cornilescu; Andrew T Ulijasz; Claudia C Cornilescu; John Lute Markley; Richard D Vierstra
Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.
Journal of molecular biology 2008;383(2):403-13.
2008: Eduard Bitto; Craig A Bingman; Lenka Bittova; Dmitry A Kondrashov; Ryan M Bannen; Brian G Fox; John Lute Markley; George N Phillips
Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain.
The Journal of biological chemistry 2008;283(44):30184-92.
2008: Jikui Song; Jered V McGivern; Karl W Nichols; John Lute Markley; Michael D Sheets
Structural basis for RNA recognition by a type II poly(A)-binding protein.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(40):15317-22.
2008: David Aceti; Eduard Bitto; Alexander F Yakunin; Michael Proudfoot; Craig A Bingman; Ronnie O Frederick; Hassan K Sreenath; Frank C Vojtik; Russell L Wrobel; Brian G Fox; John Lute Markley; George N Phillips
Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000.
Proteins 2008;73(1):241-53.
2008: Anna K Füzéry; Marco Tonelli; Dennis T Ta; Gabriel Cornilescu; Larry E Vickery; John Lute Markley
Solution structure of the iron-sulfur cluster cochaperone HscB and its binding surface for the iron-sulfur assembly scaffold protein IscU.
Biochemistry 2008;47(36):9394-404.
2008: Larry R Masterson; Marco Tonelli; John Lute Markley; Gianluigi Veglia
Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species.
Journal of the American Chemical Society 2008;130(25):7818-9.
2008: Fariba M Assadi-Porter; Marco Tonelli; Emeline Maillet; Klaas Hallenga; Outhiriaradjou Benard; Marianna Max; John Lute Markley
Direct NMR detection of the binding of functional ligands to the human sweet receptor, a heterodimeric family 3 GPCR.
Journal of the American Chemical Society 2008;130(23):7212-3.
2008: Jikui Song; Lucien Bettendorff; Marco Tonelli; John Lute Markley
Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase.
The Journal of biological chemistry 2008;283(16):10939-48.
2008: Nenad Juranić; J J Dannenberg; Gabriel Cornilescu; Pedro Salvador; Elena Atanasova; Hee-Chul Ahn; Slobodan Macura; John Lute Markley; Franklyn G Prendergast
Structural dependencies of protein backbone 2JNC' couplings.
Protein science : a publication of the Protein Society 2008;17(4):768-76.
2008: Fariba M Assadi-Porter; Sammy Patry; John Lute Markley
Efficient and rapid protein expression and purification of small high disulfide containing sweet protein brazzein in E. coli.
Protein expression and purification 2008;58(2):263-8.
2008: Claudia C Cornilescu; Frederick W Porter; Kate Qin Zhao; Ann C Palmenberg; John Lute Markley
NMR structure of the mengovirus Leader protein zinc-finger domain.
FEBS letters 2008;582(6):896-900.
2008: John Lute Markley; Eldon L Ulrich; Helen M Berman; Kim Henrick; Haruki Nakamura; Hideo Akutsu
BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions.
Journal of biomolecular NMR 2008;40(3):153-5.
2008: Jikui Song; Lian-Wang Guo; Hakim Muradov; Nikolai O Artemyev; Arnold E Ruoho; John Lute Markley
Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure.
Proceedings of the National Academy of Sciences of the United States of America 2008;105(5):1505-10.
2008: Qiu Cui; Ian A Lewis; Adrian D Hegeman; Mark E Anderson; Jing Li; Christopher F Schulte; William M Westler; Hamid R Eghbalnia; Michael R Sussman; John Lute Markley
Metabolite identification via the Madison Metabolomics Consortium Database.
Nature biotechnology 2008;26(2):162-4.
2008: Sabrina Haquin; Eric Oeuillet; Anne Pajon; Mark Harris; Alwyn T Jones; Herman van Tilbeurgh; John Lute Markley; Zolt Zolnai; Anne Poupon
Data management in structural genomics: an overview.
Methods in molecular biology (Clifton, N.J.) 2008;426():49-79.
2008: Kim Henrick; Zukang Feng; Wolfgang F Bluhm; Dimitris Dimitropoulos; Jurgen F Doreleijers; Shuchismita Dutta; Judith L Flippen-Anderson; John Ionides; Chisa Kamada; Evgeny Krissinel; Catherine L Lawson; John Lute Markley; Haruki Nakamura; Richard Newman; Yukiko Shimizu; Jawahar Swaminathan; Sameer Velankar; Jeramia Ory; Eldon L Ulrich; Wim Vranken; John Westbrook; Reiko Yamashita; Huanwang Yang; Jasmine Young; Muhammed Yousufuddin; Helen M Berman
Remediation of the protein data bank archive.
Nucleic acids research 2008;36(Database issue):D426-33.
2008: Eldon L Ulrich; Hideo Akutsu; Jurgen F Doreleijers; Yoko Harano; Yannis E Ioannidis; Jundong Lin; Miron Livny; Steve Mading; Dimitri Maziuk; Zachary Miller; Eiichi Nakatani; Christopher F Schulte; David E Tolmie; R Kent Wenger; Hongyang Yao; John Lute Markley
BioMagResBank.
Nucleic acids research 2008;36(Database issue):D402-8.
2007: Ian A Lewis; Seth C Schommer; Brendan Hodis; Kate A Robb; Marco Tonelli; William M Westler; Michael R Sussman; John Lute Markley
Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra.
Analytical chemistry 2007;79(24):9385-90.
2007: Xiaokang Pan; Gary E Wesenberg; John Lute Markley; Brian G Fox; George N Phillips; Craig A Bingman
A graphical approach to tracking and reporting target status in structural genomics.
Journal of structural and functional genomics 2007;8(4):209-16.
2007: Ronnie O Frederick; Lai Bergeman; Paul G Blommel; Lucas J Bailey; Jason G McCoy; Jikui Song; Louise Meske; Craig A Bingman; Megan Riters; Nicholas A Dillon; John Kunert; Jung Whan Yoon; Ahyoung Lim; Michael Cassidy; Jason Bunge; David Aceti; John G Primm; John Lute Markley; George N Phillips; Brian G Fox
Small-scale, semi-automated purification of eukaryotic proteins for structure determination.
Journal of structural and functional genomics 2007;8(4):153-66.
2007: Liya Wang; Hamid R Eghbalnia; John Lute Markley
Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins.
Journal of biomolecular NMR 2007;39(3):247-57.
2007: Marco Tonelli; Larry R Masterson; Klaas Hallenga; Gianluigi Veglia; John Lute Markley
Carbonyl carbon label selective (CCLS) 1H-15N HSQC experiment for improved detection of backbone 13C-15N cross peaks in larger proteins.
Journal of biomolecular NMR 2007;39(3):177-85.
2007: Adrian D Hegeman; Christopher F Schulte; Qiu Cui; Ian A Lewis; Edward L Huttlin; Hamid R Eghbalnia; Amy C Harms; Eldon L Ulrich; John Lute Markley; Michael R Sussman
Stable isotope assisted assignment of elemental compositions for metabolomics.
Analytical chemistry 2007;79(18):6912-21.
2007: Gabriel Cornilescu; Erik B Hadley; Matthew G Woll; John Lute Markley; Samuel H Gellman; Claudia C Cornilescu
Solution structure of a small protein containing a fluorinated side chain in the core.
Protein science : a publication of the Protein Society 2007;16(9):2089.
2007: George N Phillips; Brian G Fox; John Lute Markley; Brian F Volkman; Euiyoung Bae; Eduard Bitto; Craig A Bingman; Ronnie O Frederick; Jason G McCoy; Betsy L Lytle; Brad S Pierce; Jikui Song; Simon N Twigger
Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics.
Journal of structural and functional genomics 2007;8(2-3):73-84.
2007: Helen M Berman; Kim Henrick; Haruki Nakamura; John Lute Markley; Philip Bourne; John Westbrook
Realism about PDB.
Nature biotechnology 2007;25(8):845-6; author reply 846.
2007: Gabriel Cornilescu; Arash Bahrami; Marco Tonelli; John Lute Markley; Hamid R Eghbalnia
HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.
Journal of biomolecular NMR 2007;38(4):341-51.
2007: John Lute Markley
NMR analysis goes nano.
Nature biotechnology 2007;25(7):750-1.
2007: Jikui Song; Kate Qin Zhao; Carrie L Loushin Newman; Dmitriy A Vinarov; John Lute Markley
Solution structure of human sorting nexin 22.
Protein science : a publication of the Protein Society 2007;16(5):807-14.
2007: Jikui Song; John Lute Markley
Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold.
Journal of molecular biology 2007;366(1):155-64.
2007: Lian-Wang Guo; Fariba M Assadi-Porter; Jennifer E Grant; Hai Wu; John Lute Markley; Arnold E Ruoho
One-step purification of bacterially expressed recombinant transducin alpha-subunit and isotopically labeled PDE6 gamma-subunit for NMR analysis.
Protein expression and purification 2007;51(2):187-97.
2007: John Lute Markley; Mark E Anderson; Qiu Cui; Hamid R Eghbalnia; Ian A Lewis; Adrian D Hegeman; Jing Li; Christopher F Schulte; Michael R Sussman; William M Westler; Eldon L Ulrich; Zsolt Zolnai
New bioinformatics resources for metabolomics.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2007;():157-68.
2007: Jikui Song; John Lute Markley
Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner.
Protein and peptide letters 2007;14(3):265-8.
2007: Helen Berman; Kim Henrick; Haruki Nakamura; John Lute Markley
The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data.
Nucleic acids research 2007;35(Database issue):D301-3.
2007: Gabriel Cornilescu; Erik B Hadley; Matthew G Woll; John Lute Markley; Samuel H Gellman; Claudia C Cornilescu
Solution structure of a small protein containing a fluorinated side chain in the core.
Protein science : a publication of the Protein Society 2007;16(1):14-9.
2006: Jikui Song; Min S Lee; Inger Carlberg; Alexander V Vener; John Lute Markley
Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications.
Biochemistry 2006;45(51):15633-43.
2006: Robert C Tyler; Eduard Bitto; Christopher Berndsen; Craig A Bingman; Shanteri Singh; Min S Lee; Gary E Wesenberg; John M Denu; George N Phillips; John Lute Markley
Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the COG2388 family.
Biochemistry 2006;45(48):14325-36.
2006: Gabriel Cornilescu; Dmitriy A Vinarov; Ejan M Tyler; John Lute Markley; Claudia C Cornilescu
Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana.
Protein science : a publication of the Protein Society 2006;15(12):2836-41.
2006: Hee-Chul Ahn; Yen T H Le; Partha S Nagchowdhuri; Eugene F DeRose; Cindy Putnam-Evans; Robert E London; John Lute Markley; Kwang Hun Lim
NMR characterizations of an amyloidogenic conformational ensemble of the PI3K SH3 domain.
Protein science : a publication of the Protein Society 2006;15(11):2552-7.
2006: Dmitriy A Vinarov; Carrie L Loushin Newman; John Lute Markley
Wheat germ cell-free platform for eukaryotic protein production.
The FEBS journal 2006;273(18):4160-9.
2006: I-Jin Lin; Ying Chen; James A Fee; Jikui Song; William M Westler; John Lute Markley
Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential.
Journal of the American Chemical Society 2006;128(33):10672-3.
2006: Shanteri Singh; Martin Hager; Changsheng Zhang; Byron R Griffith; Min S Lee; Klaas Hallenga; John Lute Markley; Jon S Thorson
Structural insight into the self-sacrifice mechanism of enediyne resistance.
ACS chemical biology 2006;1(7):451-60.
2006: Helen M Berman; Stephen K Burley; Wah Chiu; Andrej Sali; Alexei A Adzhubei; Philip Bourne; Stephen H Bryant; Roland L Dunbrack; Krzysztof Fidelis; Joachim Frank; Adam Godzik; Kim Henrick; Andrzej Joachimiak; Bernard Heymann; David Jones; John Lute Markley; John Moult; Gaetano T Montelione; Christine Orengo; Michael G Rossmann; Burkhard Rost; Helen R Saibil; Torsten Schwede; Daron M Standley; John D Westbrook
Outcome of a workshop on archiving structural models of biological macromolecules.
Structure (London, England : 1993) 2006;14(8):1211-7.
2006: Liya Wang; Hamid R Eghbalnia; John Lute Markley
Probabilistic approach to determining unbiased random-coil carbon-13 chemical shift values from the protein chemical shift database.
Journal of biomolecular NMR 2006;35(3):155-65.
2006: Dmitriy A Vinarov; Carrie L Loushin Newman; Ejan M Tyler; John Lute Markley; Mark N Shahan
Wheat germ cell-free expression system for protein production.
Current protocols in protein science / editorial board, John E. Coligan ... [et al.] 2006;Chapter 5():Unit 5.18.
2006: Betsy L Lytle; Francis C Peterson; Ejan M Tyler; Carrie L Newman; Dmitriy A Vinarov; John Lute Markley; Brian F Volkman
Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 6):490-3.
2006: Gregory A Zornetzer; Brian G Fox; John Lute Markley
Solution structures of spinach acyl carrier protein with decanoate and stearate.
Biochemistry 2006;45(16):5217-27.
2006: Hee-Chul Ahn; Nenad Juranić; Slobodan Macura; John Lute Markley
Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface.
Journal of the American Chemical Society 2006;128(13):4398-404.
2006: Oleg Y Dmitriev; Ruslan Tsivkovskii; Frits Abildgaard; Clinton T Morgan; John Lute Markley; Svetlana Lutsenko
Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(14):5302-7.
2006: Gregory A Zornetzer; Robert D White; John Lute Markley; Brian G Fox
Preparation of isotopically labeled spinach acyl-acyl carrier protein for NMR structural studies.
Protein expression and purification 2006;46(2):446-55.
2006: Qiu Cui; Michael P Thorgersen; William M Westler; John Lute Markley; Diana Marie Downs
Solution structure of YggX: a prokaryotic protein involved in Fe(II) trafficking.
Proteins 2006;62(3):578-86.
2005: Jikui Song; Robert C Tyler; Min S Lee; Ejan M Tyler; John Lute Markley
Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex.
Journal of molecular biology 2005;354(5):1043-51.
2005: Heike Blad; Nicholas J Reiter; Frits Abildgaard; John Lute Markley; Samuel E Butcher
Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR.
Journal of molecular biology 2005;353(3):540-55.
2005: I-Jin Lin; Erika B Gebel; Timothy E Machonkin; William M Westler; John Lute Markley
Changes in hydrogen-bond strengths explain reduction potentials in 10 rubredoxin variants.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(41):14581-6.
2005: Shanteri Singh; Claudia C Cornilescu; Robert C Tyler; Gabriel Cornilescu; Marco Tonelli; Min S Lee; John Lute Markley
Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein.
Protein science : a publication of the Protein Society 2005;14(10):2601-9.
2005: Brian G Fox; Thomas E Malone; Kenneth Alan Johnson; Stacey E Madson; David Aceti; Craig A Bingman; Paul G Blommel; Blake Buchan; Brendan Burns; John Cao; Claudia Cornilescu; Jurgen Doreleijers; Jason Ellefson; Ronnie Frederick; Holokere Geetha; David Hruby; Won Bae Jeon; Todd Kimball; John Kunert; John Lute Markley; Craig Newman; Andew Olson; Francis C Peterson; George N Phillips; John Primm; Bryan Ramirez; Nathan S Rosenberg; Mike Runnels; Kory Seder; Jeff Shaw; David W Smith; Hassan Sreenath; Jikui Song; Michael R Sussman; Sandy Thao; Donna Troestler; Ejan Tyler; Robert Tyler; Eldon Ulrich; Dimitriy Vinarov; Frank Vojtik; Brian F Volkman; Gary Wesenberg; Russell L Wrobel; Jie Zhang; Qin Zhao; Zolt Zolnai
X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.
Proteins 2005;61(1):206-8.
2005: Qin Zhao; Jikui Song; Zheyuan Jin; Vicktoria Danilova; Göran Hellekant; John Lute Markley
Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts.
Biochemical and biophysical research communications 2005;335(1):256-63.
2005: Hamid R Eghbalnia; Arash Bahrami; Marco Tonelli; Klaas Hallenga; John Lute Markley
High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection.
Journal of the American Chemical Society 2005;127(36):12528-36.
2005: Kenichi Uchida; John Lute Markley; Masatsune Kainosho
Carbon-13 NMR method for the detection of correlated hydrogen exchange at adjacent backbone peptide amides and its application to hydrogen exchange in five antiparallel beta strands within the hydrophobic core of Streptomyces subtilisin inhibitor (SSI).
Biochemistry 2005;44(35):11811-20.
2005: Young Kee Chae; Kyunghee Lee; John Lute Markley
1H, 15N and 13C resonance assignments of a protein involved in the autophagy process, At4g21980.1 from Arabidopsis thaliana.
Journal of biomolecular NMR 2005;32(4):337.
2005: Jikui Song; Qin Zhao; Min S Lee; John Lute Markley
1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana.
Journal of biomolecular NMR 2005;32(4):335.
2005: Shanteri Singh; Marco Tonelli; Robert C Tyler; Arash Bahrami; Min S Lee; John Lute Markley
Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1.
Protein science : a publication of the Protein Society 2005;14(8):2095-102.
2005: Francis C Peterson; Betsy L Lytle; Sujatha Sampath; Dmitriy A Vinarov; Ejan M Tyler; Mark Shahan; John Lute Markley; Brian F Volkman
Solution structure of thioredoxin h1 from Arabidopsis thaliana.
Protein science : a publication of the Protein Society 2005;14(8):2195-200.
2005: Hamid R Eghbalnia; Arash Bahrami; Liya Wang; Amir Assadi; John Lute Markley
Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).
Journal of biomolecular NMR 2005;32(3):219-33.
2005: Radoslav K Andjus; Zeljko Dzakula; John Lute Markley; Slobodan Macura
Brain energetics and tolerance to anoxia in deep hypothermia.
Annals of the New York Academy of Sciences 2005;1048():10-35.
2005: Aart J Nederveen; Jurgen F Doreleijers; Wim Vranken; Zachary Miller; Chris A E M Spronk; Sander B Nabuurs; Peter Güntert; Miron Livny; John Lute Markley; Michael Nilges; Eldon L Ulrich; Robert Kaptein; Alexandre Bonvin
RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank.
Proteins 2005;59(4):662-72.
2005: Wim Vranken; Wayne Boucher; Timothy J Stevens; Rasmus H Fogh; Anne Pajon; Miguel Llinas; Eldon L Ulrich; John Lute Markley; John Ionides; Ernest D Laue
The CCPN data model for NMR spectroscopy: development of a software pipeline.
Proteins 2005;59(4):687-96.
2005: Christopher J Oldfield; Eldon L Ulrich; Yugong Cheng; A Keith Dunker; John Lute Markley
Addressing the intrinsic disorder bottleneck in structural proteomics.
Proteins 2005;59(3):444-53.
2005: Robert C Tyler; David Aceti; Craig A Bingman; Claudia C Cornilescu; Brian G Fox; Ronnie O Frederick; Won Bae Jeon; Min S Lee; Craig S Newman; Francis C Peterson; George N Phillips; Mark N Shahan; Shanteri Singh; Jikui Song; Hassan K Sreenath; Ejan M Tyler; Eldon L Ulrich; Dmitriy A Vinarov; Frank C Vojtik; Brian F Volkman; Russell L Wrobel; Qin Zhao; John Lute Markley
Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.
Proteins 2005;59(3):633-43.
2005: Eduard Bitto; Craig A Bingman; Simon T M Allard; Gary E Wesenberg; David Aceti; Russell L Wrobel; Ronnie O Frederick; Hassan K Sreenath; Frank C Vojtik; Won Bae Jeon; Craig S Newman; John Primm; Michael R Sussman; Brian G Fox; John Lute Markley; George N Phillips
The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 5):469-72.
2005: Hamid R Eghbalnia; Liya Wang; Arash Bahrami; Amir Assadi; John Lute Markley
Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements.
Journal of biomolecular NMR 2005;32(1):71-81.
2005: Liya Wang; Hamid R Eghbalnia; Arash Bahrami; John Lute Markley
Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications.
Journal of biomolecular NMR 2005;32(1):13-22.
2005: Jurgen F Doreleijers; Aart J Nederveen; Wim Vranken; Jundong Lin; Alexandre Bonvin; Robert Kaptein; John Lute Markley; Eldon L Ulrich
BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.
Journal of biomolecular NMR 2005;32(1):1-12.
2005: Robert C Tyler; Hassan K Sreenath; Shanteri Singh; David Aceti; Craig A Bingman; John Lute Markley; Brian G Fox
Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination.
Protein expression and purification 2005;40(2):268-78.
2005: Jikui Song; Robert C Tyler; Russell L Wrobel; Ronnie O Frederick; Frank C Vojtek; Won Bae Jeon; Min S Lee; John Lute Markley
Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.
Protein science : a publication of the Protein Society 2005;14(4):1059-63.
2005: Viktor Stolc; Manoj Pratim Samanta; Waraporn Tongprasit; Himanshu Sethi; Shoudan Liang; David C Nelson; Adrian D Hegeman; Clark Nelson; David Rancour; Sebastian Bednarek; Eldon L Ulrich; Qin Zhao; Russell L Wrobel; Craig S Newman; Brian G Fox; George N Phillips; John Lute Markley; Michael R Sussman
Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(12):4453-8.
2005: Timothy E Machonkin; William M Westler; John Lute Markley
Paramagnetic NMR spectroscopy and density functional calculations in the analysis of the geometric and electronic structures of iron-sulfur proteins.
Inorganic chemistry 2005;44(4):779-97.
2005: Dmitriy A Vinarov; John Lute Markley
High-throughput automated platform for nuclear magnetic resonance-based structural proteomics.
Expert review of proteomics 2005;2(1):49-55.
2005: Fariba M Assadi-Porter; Frits Abildgaard; Heike Blad; Claudia C Cornilescu; John Lute Markley
Brazzein, a small, sweet protein: effects of mutations on its structure, dynamics and functional properties.
Chemical senses 2005;30 Suppl 1():i90-1.
2005: Thomas E Malone; Stacey E Madson; Russell L Wrobel; Won Bae Jeon; Nathan S Rosenberg; Kenneth Alan Johnson; Craig A Bingman; David W Smith; George N Phillips; John Lute Markley; Brian G Fox
X-ray structure of Arabidopsis At2g06050, 12-oxophytodienoate reductase isoform 3.
Proteins 2005;58(1):243-5.
2004: Jikui Song; Qin Zhao; Sandy Thao; Ronnie O Frederick; John Lute Markley
Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;30(4):451-6.
2004: Lars Skjeldal; Francis C Peterson; Jurgen F Doreleijers; Luke A Moe; Jeremie D Pikus; William M Westler; John Lute Markley; Brian F Volkman; Brian G Fox
Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2004;9(8):945-53.
2004: David W Smith; Kenneth Alan Johnson; Craig A Bingman; David Aceti; Paul G Blommel; Russell L Wrobel; Ronnie O Frederick; Qin Zhao; Hassan K Sreenath; Brian G Fox; Brian F Volkman; Won Bae Jeon; Craig S Newman; Eldon L Ulrich; Adrian D Hegeman; Todd Kimball; Sandy Thao; Michael R Sussman; John Lute Markley; George N Phillips
Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana.
Proteins 2004;57(4):854-7.
2004: Il Yeong Park; Marly K Eidsness; I-Jin Lin; Erika B Gebel; Buhyun Youn; Jill L Harley; Timothy E Machonkin; Ronnie O Frederick; John Lute Markley; Eugene Smith; Toshiko Ichiye; ChulHee Kang
Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: effects of side-chain size on reduction potential.
Proteins 2004;57(3):618-25.
2004: Betsy L Lytle; Francis C Peterson; Shi-Hong Qiu; Ming Luo; Qin Zhao; John Lute Markley; Brian F Volkman
Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B.
The Journal of biological chemistry 2004;279(45):46787-93.
2004: Dmitriy A Vinarov; Betsy L Lytle; Francis C Peterson; Ejan M Tyler; Brian F Volkman; John Lute Markley
Cell-free protein production and labeling protocol for NMR-based structural proteomics.
Nature methods 2004;1(2):149-53.
2004: Nozomi Sugimori; Takuya Torizawa; David Aceti; Sandy Thao; John Lute Markley; Masatsune Kainosho
(1)H, (13)C and (15)N backbone assignment of a 32 kDa hypothetical protein from Arabidopsis thaliana, At3g16450.1.
Journal of biomolecular NMR 2004;30(3):357-8.
2004: Jikui Song; Dmitriy A Vinarov; Ejan M Tyler; Mark N Shahan; Robert C Tyler; John Lute Markley
Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold.
Journal of biomolecular NMR 2004;30(2):215-8.
2004: Craig A Bingman; Kenneth Alan Johnson; Francis C Peterson; Ronnie O Frederick; Qin Zhao; Sandy Thao; Brian G Fox; Brian F Volkman; Won Bae Jeon; David W Smith; Craig S Newman; Eldon L Ulrich; Adrian D Hegeman; Michael R Sussman; John Lute Markley; George N Phillips
Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana.
Proteins 2004;57(1):218-20.
2004: Oleg Y Dmitriev; Frits Abildgaard; John Lute Markley; Robert H Fillingame
Backbone 1H, 15N and 13C assignments for the subunit a of the E. coli ATP synthase.
Journal of biomolecular NMR 2004;29(3):439-40.
2004: Gabriel Cornilescu; Claudia C Cornilescu; Qin Zhao; Ronnie O Frederick; Francis C Peterson; Sandy Thao; John Lute Markley
Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana.
Journal of biomolecular NMR 2004;29(3):387-90.
2004: Timothy E Machonkin; William M Westler; John Lute Markley
Strategy for the study of paramagnetic proteins with slow electronic relaxation rates by nmr spectroscopy: application to oxidized human [2Fe-2S] ferredoxin.
Journal of the American Chemical Society 2004;126(17):5413-26.
2004: Young Kee Chae; Hana Im; Qin Zhao; Jed H Doelling; Richard D Vierstra; John Lute Markley
Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination.
Protein expression and purification 2004;34(2):280-3.
2004: Qin Zhao; Ronnie O Frederick; Kory D Seder; Sandy Thao; Hassan K Sreenath; Francis C Peterson; Brian F Volkman; John Lute Markley; Brian G Fox
Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N.
Journal of structural and functional genomics 2004;5(1-2):87-93.
2003: Wen-Jin Wu; Gediminas Vidugiris; Ed S Mooberry; William M Westler; John Lute Markley
Mixing apparatus for preparing NMR samples under pressure.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2003;164(1):84-91.
2003: Fariba M Assadi-Porter; Frits Abildgaard; Heike Blad; John Lute Markley
Correlation of the sweetness of variants of the protein brazzein with patterns of hydrogen bonds detected by NMR spectroscopy.
The Journal of biological chemistry 2003;278(33):31331-9.
2003: Zheyuan Jin; Vicktoria Danilova; Fariba M Assadi-Porter; John Lute Markley; Göran Hellekant
Monkey electrophysiological and human psychophysical responses to mutants of the sweet protein brazzein: delineating brazzein sweetness.
Chemical senses 2003;28(6):491-8.
2003: Zheyuan Jin; Vicktoria Danilova; Fariba M Assadi-Porter; David Aceti; John Lute Markley; Göran Hellekant
Critical regions for the sweetness of brazzein.
FEBS letters 2003;544(1-3):33-7.
2003: Jikui Song; Michael Laskowski; MA Qasim; John Lute Markley
Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics.
Biochemistry 2003;42(21):6380-91.
2003: Jurgen F Doreleijers; Steve Mading; Dimitri Maziuk; Kassandra Sojourner; Lei Yin; Jun Zhu; John Lute Markley; Eldon L Ulrich
BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.
Journal of biomolecular NMR 2003;26(2):139-46.
2003: Jikui Song; John Lute Markley
Protein inhibitors of serine proteinases: role of backbone structure and dynamics in controlling the hydrolysis constant.
Biochemistry 2003;42(18):5186-94.
2003: Jikui Song; Michael Laskowski; MA Qasim; John Lute Markley
NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain.
Biochemistry 2003;42(10):2847-56.
2003: I-Jin Lin; Erika B Gebel; Timothy E Machonkin; William M Westler; John Lute Markley
Correlation between hydrogen bond lengths and reduction potentials in Clostridium pasteurianum rubredoxin.
Journal of the American Chemical Society 2003;125(6):1464-5.
2003: Frederik J Rotsaert; Jeremie D Pikus; Brian G Fox; John Lute Markley; Joann Sanders-Loehr
N-isotope effects on the Raman spectra of Fe(2)S(2) ferredoxin and Rieske ferredoxin: evidence for structural rigidity of metal sites.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2003;8(3):318-26.
2003: Zsolt Zolnai; Peter T Lee; Jing Li; Michael R Chapman; Craig S Newman; George N Phillips; Ivan Rayment; Eldon L Ulrich; Brian F Volkman; John Lute Markley
Project management system for structural and functional proteomics: Sesame.
Journal of structural and functional genomics 2003;4(1):11-23.
2003: John Lute Markley; Eldon L Ulrich; William M Westler; Brian F Volkman
Macromolecular structure determination by NMR spectroscopy.
Methods of biochemical analysis 2003;44():89-113.
2002: William M Westler; Frank Weinhold; John Lute Markley
Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy.
Journal of the American Chemical Society 2002;124(48):14373-81.
2002: Qin Zhao; Young Kee Chae; John Lute Markley
NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor.
Biochemistry 2002;41(41):12284-96.
2002: Brian Goodfellow; Sofia G Nunes; Frank Rusnak; Isabel Moura; Carla Ascenso; José J G Moura; Brian F Volkman; John Lute Markley
Zinc-substituted Desulfovibrio gigas desulforedoxins: resolving subunit degeneracy with nonsymmetric pseudocontact shifts.
Protein science : a publication of the Protein Society 2002;11(10):2464-70.
2002: Rasmus H Fogh; John Ionides; Eldon L Ulrich; Wayne Boucher; Wim Vranken; Jens P Linge; Michael Habeck; Wolfgang Rieping; Talapady N Bhat; John Westbrook; Kim Henrick; Gary Gilliland; Helen Berman; Janet Thornton; Michael Nilges; John Lute Markley; Ernest D Laue
The CCPN project: an interim report on a data model for the NMR community.
Nature structural biology 2002;9(6):416-8.
2002: E Sonay Kuloğlu; Darrell R McCaslin; John Lute Markley; Brian F Volkman
Structural rearrangement of human lymphotactin, a C chemokine, under physiological solution conditions.
The Journal of biological chemistry 2002;277(20):17863-70.
2002: Oleg Y Dmitriev; Frits Abildgaard; John Lute Markley; Robert H Fillingame
Structure of Ala24/Asp61 --> Asp24/Asn61 substituted subunit c of Escherichia coli ATP synthase: implications for the mechanism of proton transport and rotary movement in the F0 complex.
Biochemistry 2002;41(17):5537-47.
2002: William M Westler; Perry A Frey; Jing Lin; David E Wemmer; Hiromi Morimoto; Phillip G Williams; John Lute Markley
Evidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts.
Journal of the American Chemical Society 2002;124(16):4196-7.
2002: Timothy E Machonkin; William M Westler; John Lute Markley
(13)C[(13)C] 2D NMR: a novel strategy for the study of paramagnetic proteins with slow electronic relaxation rates.
Journal of the American Chemical Society 2002;124(13):3204-5.
2002: Michele DeRider; Steven J Wilkens; Michael J Waddell; Lynn E Bretscher; Frank Weinhold; Ronald T Raines; John Lute Markley
Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations.
Journal of the American Chemical Society 2002;124(11):2497-505.
2002: Steven J Wilkens; William M Westler; Frank Weinhold; John Lute Markley
Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis.
Journal of the American Chemical Society 2002;124(7):1190-1.
2002: Michael A Kennedy; Gaetano T Montelione; Cheryl H Arrowsmith; John Lute Markley
Role for NMR in structural genomics.
Journal of structural and functional genomics 2002;2(3):155-69.
2002: William F Walkenhorst; Jason A Edwards; John Lute Markley; Heinrich Roder
Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange.
Protein science : a publication of the Protein Society 2002;11(1):82-91.
2001: Steven J Wilkens; William M Westler; John Lute Markley; Frank Weinhold
Natural J-coupling analysis: interpretation of scalar J-couplings in terms of natural bond orbitals.
Journal of the American Chemical Society 2001;123(48):12026-36.
2001: E Sonay Kuloglu; Darrell R McCaslin; Moiz Kitabwalla; C. David Pauza; John Lute Markley; Brian F Volkman
Monomeric solution structure of the prototypical 'C' chemokine lymphotactin.
Biochemistry 2001;40(42):12486-96.
2001: W Luo; Luke A Moe; Lars Skjeldal; Jeremie D Pikus; John Lute Markley; Brian G Fox
Assignment of 1H, 13C and 15N NMR signals from toluene 4-monooxygenase Rieske ferredoxin in its oxidized state.
Journal of biomolecular NMR 2001;21(1):73-4.
2001: Jikui Song; John Lute Markley
NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha).
Journal of molecular recognition : JMR 2001;14(3):166-71.
2001: D Chen; A L Zangl; Q Zhao; John Lute Markley; Jing Zheng; Ian M Bird; Ronald R Magness
Ovine caveolin-1: cDNA cloning, E. coli expression, and association with endothelial nitric oxide synthase.
Molecular and cellular endocrinology 2001;175(1-2):41-56.
2001: H Hemmi; Joey M Studts; Young Kee Chae; Jikui Song; John Lute Markley; Brian G Fox
Solution structure of the toluene 4-monooxygenase effector protein (T4moD).
Biochemistry 2001;40(12):3512-24.
2000: Young Kee Chae; John Lute Markley
Functional recombinant rabbit muscle phosphoglucomutase from Escherichia coli.
Protein expression and purification 2000;20(1):124-7.
2000: Fariba M Assadi-Porter; David Aceti; John Lute Markley
Sweetness determinant sites of brazzein, a small, heat-stable, sweet-tasting protein.
Archives of biochemistry and biophysics 2000;376(2):259-65.
2000: Fariba M Assadi-Porter; David Aceti; H Cheng; John Lute Markley
Efficient production of recombinant brazzein, a small, heat-stable, sweet-tasting protein of plant origin.
Archives of biochemistry and biophysics 2000;376(2):252-8.
2000: H Hemmi; Joey M Studts; Young Kee Chae; John Lute Markley; Brian G Fox
Assignment of 1H, 13C and 15N NMR signals in the toluene 4-monooxygenase effector protein.
Journal of biomolecular NMR 2000;16(4):359-60.
2000: B Xia; D Jenk; D M LeMaster; William M Westler; John Lute Markley
Electron-nuclear interactions in two prototypical [2Fe-2S] proteins: selective (chiral) deuteration and analysis of (1)H and (2)H NMR signals from the alpha and beta hydrogens of cysteinyl residues that ligate the iron in the active sites of human ferredoxin and Anabaena 7120 vegetative ferredoxin.
Archives of biochemistry and biophysics 2000;373(2):328-34.
1999: Young Kee Chae; Frits Abildgaard; Catherine A Royer; John Lute Markley
Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy.
Archives of biochemistry and biophysics 1999;371(1):35-40.
1999: MA Qasim; Stephen M Lu; J Ding; KS Bateman; Michael N G James; Stephen Anderson; J Song; John Lute Markley; Philip J Ganz; Charles W Saunders; Michael Laskowski
Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases.
Biochemistry 1999;38(22):7142-50.
1999: Robert W Curley; A K Sundaram; Joseph W Fowble; F Abildgaard; W M Westler; John Lute Markley
NMR studies of retinoid-protein interactions: the conformation of [13C]-beta-ionones bound to beta-lactoglobulin B.
Pharmaceutical research 1999;16(5):651-9.
1999: Brian F Volkman; M E Anderson; Kevin D Clark; Yoichi Hayakawa; Michael R Strand; John Lute Markley
Structure of the insect cytokine peptide plasmatocyte-spreading peptide 1 from Pseudoplusia includens.
The Journal of biological chemistry 1999;274(8):4493-6.
1999: G Kaslik; William M Westler; László Gráf; John Lute Markley
Properties of the His57-Asp102 dyad of rat trypsin D189S in the zymogen, activated enzyme, and alpha1-proteinase inhibitor complexed forms.
Archives of biochemistry and biophysics 1999;362(2):254-64.
1999: B Xia; Jeremie D Pikus; W Xia; Kevin McClay; Robert J Steffan; Young Kee Chae; William M Westler; John Lute Markley; Brian G Fox
Detection and classification of hyperfine-shifted 1H, 2H, and 15N resonances of the Rieske ferredoxin component of toluene 4-monooxygenase.
Biochemistry 1999;38(2):727-39.
1998: Jing Lin; William M Westler; W W Cleland; John Lute Markley; Perry A Frey
Fractionation factors and activation energies for exchange of the low barrier hydrogen bonding proton in peptidyl trifluoromethyl ketone complexes of chymotrypsin.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(25):14664-8.
1998: Zeljko Dzakula; Michele DeRider; William M Westler; Slobodan Macura; John Lute Markley
Analysis of error propagation from NMR-derived internuclear distances into molecular structure of cyclo-pro-gly.
Journal of magnetic resonance (San Diego, Calif. : 1997) 1998;135(2):454-65.
1998: Young Kee Chae; Frits Abildgaard; E R Chapman; John Lute Markley
Lipid binding ridge on loops 2 and 3 of the C2A domain of synaptotagmin I as revealed by NMR spectroscopy.
The Journal of biological chemistry 1998;273(40):25659-63.
1998: L Wang; Yue Li; F Abildgaard; John Lute Markley; Honggao Yan
NMR solution structure of type II human cellular retinoic acid binding protein: implications for ligand binding.
Biochemistry 1998;37(37):12727-36.
1998: John Lute Markley; Adriaan Bax; Y Arata; CW Hilbers; Robert Kaptein; BD Sykes; Peter Wright; Kurt Wüthrich
Recommendations for the presentation of NMR structures of proteins and nucleic acids--IUPAC-IUBMB-IUPAB Inter-Union Task Group on the standardization of data bases of protein and nucleic acid structures determined by NMR spectroscopy.
European journal of biochemistry / FEBS 1998;256(1):1-15.
1998: Brian F Volkman; S L Alam; James D Satterlee; John Lute Markley
Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO.
Biochemistry 1998;37(31):10906-19.
1998: R A Chylla; Brian F Volkman; John Lute Markley
Practical model fitting approaches to the direct extraction of NMR parameters simultaneously from all dimensions of multidimensional NMR spectra.
Journal of biomolecular NMR 1998;12(2):277-97.
1998: John Lute Markley; Adriaan Bax; Y Arata; CW Hilbers; Robert Kaptein; BD Sykes; Peter Wright; Kurt Wüthrich
Recommendations for the presentation of NMR structures of proteins and nucleic acids.
Journal of molecular biology 1998;280(5):933-52.
1998: AM Weber-Main; John K Hurley; H Cheng; B Xia; Y K Chae; John Lute Markley; M Martinez-Júlvez; C Gomez-Moreno; Marian T Stankovich; Gordon Tollin
An electrochemical, kinetic, and spectroscopic characterization of [2Fe-2S] vegetative and heterocyst ferredoxins from Anabaena 7120 with mutations in the cluster binding loop.
Archives of biochemistry and biophysics 1998;355(2):181-8.
1998: Senyon Choe; Zeljko Dzakula; E Sonay Kuloglu; John Lute Markley
Assignment of 1H, 13C, and 15N signals of turkey ovomucoid third domain at pH 2.0.
Journal of biomolecular NMR 1998;12(1):193-5.
1998: John Lute Markley; Adriaan Bax; Y Arata; CW Hilbers; Robert Kaptein; BD Sykes; Peter Wright; Kurt Wüthrich
Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.
Journal of biomolecular NMR 1998;12(1):1-23.
1998: Mark E Girvin; VK Rastogi; Frits Abildgaard; John Lute Markley; Robert H Fillingame
Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase.
Biochemistry 1998;37(25):8817-24.
1998: J E Caldwell; Frits Abildgaard; Zeljko Dzakula; D Ming; Göran Hellekant; John Lute Markley
Solution structure of the thermostable sweet-tasting protein brazzein.
Nature structural biology 1998;5(6):427-31.
1998: Kenneth E Prehoda; Ed S Mooberry; John Lute Markley
Pressure denaturation of proteins: evaluation of compressibility effects.
Biochemistry 1998;37(17):5785-90.
1998: B Xia; Brian F Volkman; John Lute Markley
Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy.
Biochemistry 1998;37(11):3965-73.
1998: Masakazu Hirasawa; John K Hurley; Zdzislaw Salamon; Gordon Tollin; John Lute Markley; H Cheng; B Xia; David B Knaff
The role of aromatic and acidic amino acids in the electron transfer reaction catalyzed by spinach ferredoxin-dependent glutamate synthase.
Biochimica et biophysica acta 1998;1363(2):134-46.
1998: J E Caldwell; Frits Abildgaard; D Ming; Göran Hellekant; John Lute Markley
Complete 1H and partial 13C resonance assignments at 37 and 22 degrees C for brazzein, an intensely sweet protein.
Journal of biomolecular NMR 1998;11(2):231-2.
1998: S L Alam; Brian F Volkman; John Lute Markley; James D Satterlee
Detailed NMR analysis of the heme-protein interactions in component IV Glycera dibranchiata monomeric hemoglobin-CO.
Journal of biomolecular NMR 1998;11(2):119-33.
1997: John K Hurley; AM Weber-Main; A E Hodges; Marian T Stankovich; Matthew M Benning; Hazel M Holden; H Cheng; B Xia; John Lute Markley; C Genzor; C Gomez-Moreno; R Hafezi; Gordon Tollin
Iron-sulfur cluster cysteine-to-serine mutants of Anabaena -2Fe-2S- ferredoxin exhibit unexpected redox properties and are competent in electron transfer to ferredoxin:NADP+ reductase.
Biochemistry 1997;36(49):15109-17.
1997: PT Chivers; Kenneth E Prehoda; Brian F Volkman; B M Kim; John Lute Markley; Ronald T Raines
Microscopic pKa values of Escherichia coli thioredoxin.
Biochemistry 1997;36(48):14985-91.
1997: A M Prantner; Brian F Volkman; Steven J Wilkens; B Xia; John Lute Markley
Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: oxidation state-dependent changes in chemical shifts and relaxation rates.
Journal of biomolecular NMR 1997;10(4):411-2.
1997: Brian F Volkman; A M Prantner; Steven J Wilkens; B Xia; John Lute Markley
Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin.
Journal of biomolecular NMR 1997;10(4):409-10.
1997: John K Hurley; AM Weber-Main; Marian T Stankovich; Matthew M Benning; James B Thoden; Janeen L Vanhooke; Hazel M Holden; Y K Chae; B Xia; H Cheng; John Lute Markley; M Martinez-Júlvez; Carlos Gómez-Moreno; James Schmeits; Gordon Tollin
Structure-function relationships in Anabaena ferredoxin: correlations between X-ray crystal structures, reduction potentials, and rate constants of electron transfer to ferredoxin:NADP+ reductase for site-specific ferredoxin mutants.
Biochemistry 1997;36(37):11100-17.
1997: J Wang; D M Truckses; Frits Abildgaard; Zeljko Dzakula; Zsolt Zolnai; John Lute Markley
Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: nuclease-H124L and its ternary complex with Ca2+ and thymidine-3',5'-bisphosphate.
Journal of biomolecular NMR 1997;10(2):143-64.
1997: H Rémigy; Michel Jaquinod; Y Pétillot; Jean Gagnon; H Cheng; B Xia; John Lute Markley; John K Hurley; Gordon Tollin; Eric Forest
Probing the influence of mutations on the stability of a ferredoxin by mass spectrometry.
Journal of protein chemistry 1997;16(5):527-32.
1997: Z An; Qin Zhao; J McEvoy; WM Yuan; John Lute Markley; Sally A Leong
The second finger of Urbs1 is required for iron-mediated repression of sid1 in Ustilago maydis.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(11):5882-7.
1997: G Kaslik; Julianna Kardos; Erika Szabó; László Szilágyi; Péter Závodszky; William M Westler; John Lute Markley; László Gráf
Effects of serpin binding on the target proteinase: global stabilization, localized increased structural flexibility, and conserved hydrogen bonding at the active site.
Biochemistry 1997;36(18):5455-64.
1996: D M Truckses; J R Somoza; Kenneth E Prehoda; S C Miller; John Lute Markley
Coupling between trans/cis proline isomerization and protein stability in staphylococcal nuclease.
Protein science : a publication of the Protein Society 1996;5(9):1907-16.
1996: John Lute Markley; William M Westler
Protonation-state dependence of hydrogen bond strengths and exchange rates in a serine protease catalytic triad: bovine chymotrypsinogen A.
Biochemistry 1996;35(34):11092-7.
1996: Andrew Hinck; D M Truckses; John Lute Markley
Engineered disulfide bonds in staphylococcal nuclease: effects on the stability and conformation of the folded protein.
Biochemistry 1996;35(32):10328-38.
1996: B Xia; H Cheng; Vahe Bandarian; George H Reed; John Lute Markley
Human ferredoxin: overproduction in Escherichia coli, reconstitution in vitro, and spectroscopic studies of iron-sulfur cluster ligand cysteine-to-serine mutants.
Biochemistry 1996;35(29):9488-95.
1996: Charles G Hoogstraten; John Lute Markley
Effects of experimentally achievable improvements in the quality of NMR distance constraints on the accuracy of calculated protein structures.
Journal of molecular biology 1996;258(2):334-48.
1996: Zeljko Dzakula; William M Westler; John Lute Markley
Continuous probability distribution (CUPID) analysis of potentials for internal rotations.
Journal of magnetic resonance. Series B 1996;111(2):109-26.
1996: G J Vidugiris; D M Truckses; John Lute Markley; Catherine A Royer
High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants.
Biochemistry 1996;35(12):3857-64.
1995: Charles G Hoogstraten; S Choe; William M Westler; John Lute Markley
Comparison of the accuracy of protein solution structures derived from conventional and network-edited NOESY data.
Protein science : a publication of the Protein Society 1995;4(11):2289-99.
1995: Charles G Hoogstraten; William M Westler; E S Mooberry; Slobodan Macura; John Lute Markley
Analysis of transverse cross relaxation in proteins within a simplified relaxation submatrix: BD-ROESY.
Journal of magnetic resonance. Series B 1995;109(1):76-9.
1995: David S Wishart; C G Bigam; J Yao; F Abildgaard; H J Dyson; E Oldfield; John Lute Markley; Brian D Sykes
1H, 13C and 15N chemical shift referencing in biomolecular NMR.
Journal of biomolecular NMR 1995;6(2):135-40.
1995: T C Pinkerton; W J Howe; E L Ulrich; J P Comiskey; Jun Haginaka; T Murashima; W F Walkenhorst; William M Westler; John Lute Markley
Protein binding chiral discrimination of HPLC stationary phases made with whole, fragmented, and third domain turkey ovomucoid.
Analytical chemistry 1995;67(14):2354-67.
1995: B M Burkhart; Boopathy Ramakrishnan; H Yan; R J Reedstrom; John Lute Markley; N A Straus; Muttaiya Sundaralingam
Structure of the trigonal form of recombinant oxidized flavodoxin from Anabaena 7120 at 1.40 A resolution.
Acta crystallographica. Section D, Biological crystallography 1995;51(Pt 3):318-30.
1995: D Ming; John Lute Markley; Göran Hellekant
Quantification of cysteinyl sulfhydryl residues in peptides and proteins by ESI-MS or MALDI-MS.
BioTechniques 1995;18(5):808-10.
1995: G J Vidugiris; John Lute Markley; Catherine A Royer
Evidence for a molten globule-like transition state in protein folding from determination of activation volumes.
Biochemistry 1995;34(15):4909-12.
1995: R A Chylla; John Lute Markley
Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data.
Journal of biomolecular NMR 1995;5(3):245-58.
1995: D Ming; John Lute Markley; Göran Hellekant
Quantification of cysteinyl sulfhydryl residues in peptides and proteins by ESI-MS or MALDI-MS.
Peptide research 1995;8(2):113-4.
1995: H Cheng; William M Westler; B Xia; B H Oh; John Lute Markley
Protein expression, selective isotopic labeling, and analysis of hyperfine-shifted NMR signals of Anabaena 7120 vegetative [2Fe-2S]ferredoxin.
Archives of biochemistry and biophysics 1995;316(1):619-34.
1995: Young Kee Chae; John Lute Markley
Analysis of the hyperfine-shifted nitrogen-15 resonances of the oxidized form of Anabaena 7120 heterocyst ferredoxin.
Biochemistry 1995;34(1):188-93.
1995: B Xia; H Cheng; L Skjeldal; V M Coghlan; Larry E Vickery; John Lute Markley
Multinuclear magnetic resonance and mutagenesis studies of the histidine residues of human mitochondrial ferredoxin.
Biochemistry 1995;34(1):180-7.
1995: John K Hurley; Michael Caffrey; John Lute Markley; H Cheng; B Xia; Young Kee Chae; Hazel M Holden; Gordon Tollin
Mutations of surface residues in Anabaena vegetative and heterocyst ferredoxin that affect thermodynamic stability as determined by guanidine hydrochloride denaturation.
Protein science : a publication of the Protein Society 1995;4(1):58-64.
1995: H Cheng; John Lute Markley
NMR spectroscopic studies of paramagnetic proteins: iron-sulfur proteins.
Annual review of biophysics and biomolecular structure 1995;24():209-37.
1994: W F Walkenhorst; A M Krezel; G I Rhyu; John Lute Markley
Solution structure of reactive-site hydrolyzed turkey ovomucoid third domain by nuclear magnetic resonance and distance geometry methods.
Journal of molecular biology 1994;242(3):215-30.
1994: A M Krezel; P Darba; A D Robertson; J Fejzo; Slobodan Macura; John Lute Markley
Solution structure of turkey ovomucoid third domain as determined from nuclear magnetic resonance data.
Journal of molecular biology 1994;242(3):203-14.
1994: Carlos Gómez-Moreno; Milagros Medina; John K Hurley; Michael A Cusanovich; John Lute Markley; H Cheng; B Xia; Young Kee Chae; Gordon Tollin
Protein engineering for the elucidation of the mechanism of electron transfer in redox proteins.
Biochemical Society transactions 1994;22(3):796-800.
1994: A S Edison; F Weinhold; William M Westler; John Lute Markley
Estimates of phi and psi torsion angles in proteins from one-, two- and three-bond nuclear spin-spin couplings: application to staphylococcal nuclease.
Journal of biomolecular NMR 1994;4(4):543-51.
1994: A S Edison; John Lute Markley; F Weinhold
Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data.
Journal of biomolecular NMR 1994;4(4):519-42.
1994: SE Kornguth; M Anderson; John Lute Markley; A Shedlovsky
Near-microscopic magnetic resonance imaging of the brains of phenylalanine hydroxylase-deficient mice, normal littermates, and of normal BALB/c mice at 9.4 Tesla.
NeuroImage 1994;1(3):220-9.
1994: M Ghassemian; B Wong; F Ferreira; John Lute Markley; N A Straus
Cloning, sequencing and transcriptional studies of the genes for cytochrome c-553 and plastocyanin from Anabaena sp. PCC 7120.
Microbiology (Reading, England) 1994;140 ( Pt 5)():1151-9.
1994: J B Olson; John Lute Markley
Evaluation of an algorithm for the automated sequential assignment of protein backbone resonances: a demonstration of the connectivity tracing assignment tools (CONTRAST) software package.
Journal of biomolecular NMR 1994;4(3):385-410.
1994: Young Kee Chae; Frits Abildgaard; E S Mooberry; John Lute Markley
Multinuclear, multidimensional NMR studies of Anabaena 7120 heterocyst ferredoxin. Sequence-specific resonance assignments and secondary structure of the oxidized form in solution.
Biochemistry 1994;33(11):3287-95.
1994: H Cheng; B Xia; George H Reed; John Lute Markley
Optical, EPR, and 1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin.
Biochemistry 1994;33(11):3155-64.
1994: S N Loh; John Lute Markley
Hydrogen bonding in proteins as studied by amide hydrogen D/H fractionation factors: application to staphylococcal nuclease.
Biochemistry 1994;33(4):1029-36.
1994: Hazel M Holden; B L Jacobson; John K Hurley; Gordon Tollin; B H Oh; L Skjeldal; Young Kee Chae; H Cheng; B Xia; John Lute Markley
Structure-function studies of [2Fe-2S] ferredoxins.
Journal of bioenergetics and biomembranes 1994;26(1):67-88.
1994: MC Chobanian; M E Anderson; John Lute Markley; Peter C Brazy
ATP turnover and intracellular pH limit glutamine utilization in canine renal proximal tubules.
Contributions to nephrology 1994;110():20-4.
1994: A S Edison; Frits Abildgaard; William M Westler; E S Mooberry; John Lute Markley
Practical introduction to theory and implementation of multinuclear, multidimensional nuclear magnetic resonance experiments.
Methods in enzymology 1994;239():3-79.
1994: E S Mooberry; Frits Abildgaard; John Lute Markley
Modifications of older model nuclear magnetic resonance console for collection of multinuclear, multidimensional spectral data.
Methods in enzymology 1994;239():247-56.
1994: Slobodan Macura; William M Westler; John Lute Markley
Two-dimensional exchange spectroscopy of proteins.
Methods in enzymology 1994;239():106-44.
1993: Miquel E Cabañas; J Alonso; Carles Arús; M E Anderson; W M Westler; John Lute Markley
A versatile perifusion system for the NMR spectroscopy of bovine retina. Assignment of resonances and effect of ischemia.
Experimental eye research 1993;57(6):669-78.
1993: In-Ja L Byeon; H Yan; A S Edison; E S Mooberry; Frits Abildgaard; John Lute Markley; Ming-Daw Tsai
Mechanism of adenylate kinase. 1H, 13C, and 15N NMR assignments, secondary structures, and substrate binding sites.
Biochemistry 1993;32(46):12508-21.
1993: Andrew Hinck; E S Eberhardt; John Lute Markley
NMR strategy for determining Xaa-Pro peptide bond configurations in proteins: mutants of staphylococcal nuclease with altered configuration at proline-117.
Biochemistry 1993;32(44):11810-8.
1993: S N Loh; Kenneth E Prehoda; J Wang; John Lute Markley
Hydrogen exchange in unligated and ligated staphylococcal nuclease.
Biochemistry 1993;32(41):11022-8.
1993: John K Hurley; Zdzislaw Salamon; Terry E Meyer; J C Fitch; Michael A Cusanovich; John Lute Markley; H Cheng; B Xia; Young Kee Chae; Milagros Medina
Amino acid residues in Anabaena ferredoxin crucial to interaction with ferredoxin-NADP+ reductase: site-directed mutagenesis and laser flash photolysis.
Biochemistry 1993;32(36):9346-54.
1993: R A Chylla; John Lute Markley
Improved frequency resolution in multidimensional constant-time experiments by multidimensional Bayesian analysis.
Journal of biomolecular NMR 1993;3(5):515-33.
1993: B L Jacobson; Young Kee Chae; John Lute Markley; Ivan Rayment; Hazel M Holden
Molecular structure of the oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120 determined to 1.7-A resolution.
Biochemistry 1993;32(26):6788-93.
1993: DD Gilboe; Douglas B Kintner; M E Anderson; JH Fitzpatrick; S E Emoto; John Lute Markley
Inorganic phosphate compartmentation in the normal isolated canine brain.
Journal of neurochemistry 1993;60(6):2192-203.
1993: Catherine A Royer; Andrew Hinck; S N Loh; Kenneth E Prehoda; X Peng; J Jonas; John Lute Markley
Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy.
Biochemistry 1993;32(19):5222-32.
1993: M E Anderson; John Lute Markley; C Arùs; M C Chobanian
A perifusion loop-gap resonator NMR probe for aerobic cell suspensions.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1993;29(4):563-6.
1993: Andrew Hinck; W F Walkenhorst; William M Westler; S Choe; John Lute Markley
Overexpression and purification of avian ovomucoid third domains in Escherichia coli.
Protein engineering 1993;6(2):221-7.
1992: S T Rao; F Shaffie; C Yu; K A Satyshur; B J Stockman; John Lute Markley; M Sundarlingam
Structure of the oxidized long-chain flavodoxin from Anabaena 7120 at 2 A resolution.
Protein science : a publication of the Protein Society 1992;1(11):1413-27.
1992: D C McCain; John Lute Markley
In vivo study of chloroplast volume regulation.
Biophysical journal 1992;61(5):1207-12.
1992: D C McCain; John Lute Markley
A nuclear magnetic resonance imaging technique designed for studies of water in plant leaves.
Journal of structural biology 1992;108(3):195-201.
1992: B L Jacobson; Young Kee Chae; H Böhme; John Lute Markley; Hazel M Holden
Crystallization and preliminary analysis of oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120.
Archives of biochemistry and biophysics 1992;294(1):279-81.
1992: A L Houseman; B H Oh; M C Kennedy; C Fan; M M Werst; H Beinert; John Lute Markley; Brian M Hoffman
14,15N, 13C, 57Fe, and 1,2H Q-band ENDOR study of Fe-S proteins with clusters that have endogenous sulfur ligands.
Biochemistry 1992;31(7):2073-80.
1992: J F Wang; Andrew Hinck; S N Loh; D M LeMaster; John Lute Markley
Solution studies of staphylococcal nuclease H124L. 2. 1H, 13C, and 15N chemical shift assignments for the unligated enzyme and analysis of chemical shift changes that accompany formation of the nuclease-thymidine 3',5'-bisphosphate-calcium ternary complex.
Biochemistry 1992;31(3):921-36.
1992: J F Wang; E S Mooberry; W F Walkenhorst; John Lute Markley
Solution studies of staphylococcal nuclease H124L. 1. Backbone 1H and 15N resonances and secondary structure of the unligated enzyme as identified by three-dimensional NMR spectroscopy.
Biochemistry 1992;31(3):911-20.
1991: L Skjeldal; John Lute Markley; V M Coghlan; Larry E Vickery
1H NMR spectra of vertebrate [2Fe-2S] ferredoxins. Hyperfine resonances suggest different electron delocalization patterns from plant ferredoxins.
Biochemistry 1991;30(37):9078-83.
1991: B R Seavey; E A Farr; William M Westler; John Lute Markley
A relational database for sequence-specific protein NMR data.
Journal of biomolecular NMR 1991;1(3):217-36.
1991: L Skjeldal; William M Westler; B H Oh; A M Krezel; Hazel M Holden; B L Jacobson; Ivan Rayment; John Lute Markley
Two-dimensional magnetization exchange spectroscopy of Anabaena 7120 ferredoxin. Nuclear Overhauser effect and electron self-exchange cross peaks from amino acid residues surrounding the 2Fe-2S* cluster.
Biochemistry 1991;30(30):7363-8.
1991: W R Rypniewski; Deborah Breiter; Matthew M Benning; Gary E Wesenberg; B H Oh; John Lute Markley; Ivan Rayment; Hazel M Holden
Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120.
Biochemistry 1991;30(17):4126-31.
1991: J Fejzo; A M Krezel; William M Westler; Slobodan Macura; John Lute Markley
Refinement of the NMR solution structure of a protein to remove distortions arising from neglect of internal motion.
Biochemistry 1991;30(16):3807-11.
1990: Brian J Stockman; A M Krezel; John Lute Markley; K G Leonhardt; N A Straus
Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions.
Biochemistry 1990;29(41):9600-9.
1990: J Alonso; Carles Arús; W M Westler; John Lute Markley
Two-dimensional spectra of intact tissue: homonuclear Hartmann-Hahn spectroscopy provides increased sensitivity and information content as compared to COSY.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1990;15(1):142-51.
1990: K E Paulsen; Marian T Stankovich; B J Stockman; John Lute Markley
Redox and spectral properties of flavodoxin from Anabaena 7120.
Archives of biochemistry and biophysics 1990;280(1):68-73.
1990: A T Alexandrescu; Andrew Hinck; John Lute Markley
Coupling between local structure and global stability of a protein: mutants of staphylococcal nuclease.
Biochemistry 1990;29(19):4516-25.
1990: J F Wang; Andrew Hinck; S N Loh; John Lute Markley
Two-dimensional NMR studies of staphylococcal nuclease: evidence for conformational heterogeneity from hydrogen-1, carbon-13, and nitrogen-15 spin system assignments of the aromatic amino acids in the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex.
Biochemistry 1990;29(17):4242-53.
1990: L Skjeldal; William M Westler; John Lute Markley
Detection and characterization of hyperfine-shifted resonances in the proton nuclear magnetic resonance spectrum of Anabaena 7120 ferredoxin at high magnetic fields.
Archives of biochemistry and biophysics 1990;278(2):482-5.
1990: B H Oh; John Lute Markley
Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 3. Detection and characterization of hyperfine-shifted nitrogen-15 and hydrogen-1 resonances of the oxidized form.
Biochemistry 1990;29(16):4012-7.
1990: B H Oh; E S Mooberry; John Lute Markley
Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 2. Sequence-specific carbon-13 and nitrogen-15 resonance assignments of the oxidized form.
Biochemistry 1990;29(16):4004-11.
1990: B H Oh; John Lute Markley
Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 1. Sequence-specific hydrogen-1 resonance assignments and secondary structure in solution of the oxidized form.
Biochemistry 1990;29(16):3993-4004.
1990: A D Robertson; G I Rhyu; William M Westler; John Lute Markley
Assignment of the 13C-NMR spectra of virgin and reactive-site modified turkey ovomucoid third domain.
Biopolymers 1990;29(2):461-7.
1990: M H Zehfus; M D Reily; E L Ulrich; William M Westler; John Lute Markley
1H, 13C, and 15N resonance assignments for a ferrocytochrome c553 heme by multinuclear NMR spectroscopy.
Archives of biochemistry and biophysics 1990;276(2):369-73.
1990: J F Wang; Andrew Hinck; S N Loh; John Lute Markley
Two-dimensional NMR studies of staphylococcal nuclease. 2. Sequence-specific assignments of carbon-13 and nitrogen-15 signals from the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex.
Biochemistry 1990;29(1):102-13.
1990: J F Wang; D M LeMaster; John Lute Markley
Two-dimensional NMR studies of staphylococcal nuclease. 1. Sequence-specific assignments of hydrogen-1 signals and solution structure of the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex.
Biochemistry 1990;29(1):88-101.
1989: B H Oh; John Lute Markley
Complete 13C resonance assignments of tryptophan in L-lysyl-L-tryptophyl-L-lysine by single-bond and multiple-bond correlated 1H-13C two-dimensional NMR.
Biopolymers 1989;28(10):1833-7.
1989: J Alonso; Carles Arús; W M Westler; John Lute Markley
Two-dimensional correlated spectroscopy (COSY) of intact frog muscle: spectral pattern characterization and lactate quantitation.
Magnetic resonance in medicine : official journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine 1989;11(3):316-30.
1989: D C McCain; John Lute Markley
More manganese accumulates in maple sun leaves than in shade leaves.
Plant physiology 1989;90(4):1417-21.
1989: D C McCain; J Croxdale; John Lute Markley
Thermal damage to chloroplast envelope membranes.
Plant physiology 1989;90(2):606-9.
1989: C B Grissom; John Lute Markley
Staphylococcal nuclease active-site amino acids: pH dependence of tyrosines and arginines by 13C NMR and correlation with kinetic studies.
Biochemistry 1989;28(5):2116-24.
1989: A T Alexandrescu; E L Ulrich; John Lute Markley
Hydrogen-1 NMR evidence for three interconverting forms of staphylococcal nuclease: effects of mutations and solution conditions on their distribution.
Biochemistry 1989;28(1):204-11.
1989: Brian J Stockman; M D Reily; William M Westler; E L Ulrich; John Lute Markley
Concerted two-dimensional NMR approaches to hydrogen-1, carbon-13, and nitrogen-15 resonance assignments in proteins.
Biochemistry 1989;28(1):230-6.
1989: E L Ulrich; John Lute Markley; Y Kyogoku
Creation of a nuclear magnetic resonance data repository and literature database.
Protein sequences & data analysis 1989;2(1):23-37.
1989: John Lute Markley
Two-dimensional nuclear magnetic resonance spectroscopy of proteins: an overview.
Methods in enzymology 1989;176():12-64.
1988: W M Westler; Y Miyake; B J Stockman; M Kainosho; Y Hosoya; John Lute Markley
Correlation of carbon-13 and nitrogen-15 chemical shifts in selectively and uniformly labeled proteins by heteronuclear two-dimensional NMR spectroscopy.
Journal of the American Chemical Society 1988;110(18):6256-8.