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Jeffrey Chang

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Gene Expression Profiling

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Oligonucleotide Array Sequence Analysis

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Publications

TOP 3
Qing Cheng; Joseph Geradts; Timothy Haystead; Leonard M Neckers; Neil L Spector; Jeffrey T Chang; H Kim Lyerly
Amplification and high-level expression of heat shock protein 90 marks aggressive phenotypes of human epidermal growth factor receptor 2 negative breast cancer.
Igor Shats; Michael L Gatza; Jeffrey T Chang; Seiichi Mori; Jialiang Wang; Jeremy Rich; Joseph R Nevins
Using a stem cell-based signature to guide therapeutic selection in cancer.
Eran R Andrechek; Robert Cardiff; Jeffrey T Chang; Michael L Gatza; Chaitanya R Acharya; Anil Potti; Joseph R Nevins
Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.

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All Publications

2012: Qing Cheng; Joseph Geradts; Timothy Haystead; Leonard M Neckers; Neil L Spector; Jeffrey T Chang; H Kim Lyerly
Amplification and high-level expression of heat shock protein 90 marks aggressive phenotypes of human epidermal growth factor receptor 2 negative breast cancer.
Breast cancer research : BCR 2012;14(2):R62.
2011: Igor Shats; Michael L Gatza; Jeffrey T Chang; Seiichi Mori; Jialiang Wang; Jeremy Rich; Joseph R Nevins
Using a stem cell-based signature to guide therapeutic selection in cancer.
Cancer research 2011;71(5):1772-80.
2009: Eran R Andrechek; Robert Cardiff; Jeffrey T Chang; Michael L Gatza; Chaitanya R Acharya; Anil Potti; Joseph R Nevins
Genetic heterogeneity of Myc-induced mammary tumors reflecting diverse phenotypes including metastatic potential.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(38):16387-92.
2009: J A Freedman; Jeffrey T Chang; L Jakoi; Joseph R Nevins
A combinatorial mechanism for determining the specificity of E2F activation and repression.
Oncogene 2009;28(32):2873-81.
2009: Susumu Mori; Jeffrey T Chang; Eran R Andrechek; N Matsumura; T Baba; G Yao; J W Kim; M Gatza; S Murphy; Joseph R Nevins
Anchorage-independent cell growth signature identifies tumors with metastatic potential.
Oncogene 2009;28(31):2796-805.
2009: Peter J A Cock; Tiago Antao; Jeffrey T Chang; Brad A Chapman; Cymon J Cox; Andrew Dalke; Iddo Friedberg; Thomas Hamelryck; Frank Kauff; Bartek Wilczynski; Michiel J L de Hoon
Biopython: freely available Python tools for computational molecular biology and bioinformatics.
Bioinformatics (Oxford, England) 2009;25(11):1422-3.
2009: Jeffrey T Chang; Carlos Carvalho; Seiichi Mori; Andrea Bild; Michael L Gatza; Quanli Wang; Joseph E Lucas; Anil Potti; Phillip G Febbo; Mike West; Joseph R Nevins
A genomic strategy to elucidate modules of oncogenic pathway signaling networks.
Molecular cell 2009;34(1):104-14.
2009: Noriomi Matsumura; Zhiqing Huang; Tsukasa Baba; Paula S Lee; Jason C Barnett; Seiichi Mori; Jeffrey T Chang; Wen-Lin Kuo; Alison H Gusberg; Regina S Whitaker; Joe Gray; Shingo Fujii; Andrew Berchuck; Susan Murphy
Yin yang 1 modulates taxane response in epithelial ovarian cancer.
Molecular cancer research : MCR 2009;7(2):210-20.
2009: Seiichi Mori; Jeffrey T Chang; Eran R Andrechek; Anil Potti; Joseph R Nevins
Utilization of genomic signatures to identify phenotype-specific drugs.
PloS one 2009;4(8):e6772.
2008: Seiichi Mori; Rachel E Rempel; Jeffrey T Chang; Guang Yao; Anand S Lagoo; Anil Potti; Andrea Bild; Joseph R Nevins
Utilization of pathway signatures to reveal distinct types of B lymphoma in the Emicro-myc model and human diffuse large B-cell lymphoma.
Cancer research 2008;68(20):8525-34.
2008: Eran R Andrechek; Seiichi Mori; Rachel E Rempel; Jeffrey T Chang; Joseph R Nevins
Patterns of cell signaling pathway activation that characterize mammary development.
Development (Cambridge, England) 2008;135(14):2403-13.
2007: L-J Kong; Jeffrey T Chang; Andrea Bild; Joseph R Nevins
Compensation and specificity of function within the E2F family.
Oncogene 2007;26(3):321-7.
2006: Jeffrey T Chang; Joseph R Nevins
GATHER: a systems approach to interpreting genomic signatures.
Bioinformatics (Oxford, England) 2006;22(23):2926-33.
2006: Andrea Bild; Guang Yao; Jeffrey T Chang; Quanli Wang; Anil Potti; Dawn Chasse; Mary-Beth Moore Joshi; David H Harpole; Johnathan M Lancaster; Andrew Berchuck; John Olson; Jeffrey R Marks; Holly K Dressman; Mike West; Joseph R Nevins
Oncogenic pathway signatures in human cancers as a guide to targeted therapies.
Nature 2006;439(7074):353-7.
2005: Mark Delong; Guang Yao; Quanli Wang; Adrian Dobra; Esther P Black; Jeffrey T Chang; Andrea Bild; Mike West; Joseph R Nevins; Holly K Dressman
DIG--a system for gene annotation and functional discovery.
Bioinformatics (Oxford, England) 2005;21(13):2957-9.
2005: Jonathan Wren; Jeffrey T Chang; James Pustejovsky; Eytan Adar; Harold R Garner; Russ B Altman
Biomedical term mapping databases.
Nucleic acids research 2005;33(Database issue):D289-93.
2004: Jeffrey T Chang; Russ B Altman
Extracting and characterizing gene-drug relationships from the literature.
Pharmacogenetics 2004;14(9):577-86.
2004: Jeffrey T Chang; Hinrich Schütze; Russ B Altman
GAPSCORE: finding gene and protein names one word at a time.
Bioinformatics (Oxford, England) 2004;20(2):216-25.
2003: Soumya Raychaudhuri; Jeffrey T Chang; Farhad Imam; Russ B Altman
The computational analysis of scientific literature to define and recognize gene expression clusters.
Nucleic acids research 2003;31(15):4553-60.
2002: Jeffrey T Chang; Hinrich Schütze; Russ B Altman
Creating an online dictionary of abbreviations from MEDLINE.
Journal of the American Medical Informatics Association : JAMIA 2002;9(6):612-20.
2002: Jeffrey T Chang; Russ B Altman
Promises of text processing: natural language processing meets AI.
Drug discovery today 2002;7(19):992-3.
2002: Soumya Raychaudhuri; Jeffrey T Chang; Patrick D Sutphin; Russ B Altman
Associating genes with gene ontology codes using a maximum entropy analysis of biomedical literature.
Genome research 2002;12(1):203-14.
2001: Soumya Raychaudhuri; Patrick D Sutphin; Jeffrey T Chang; Russ B Altman
Basic microarray analysis: grouping and feature reduction.
Trends in biotechnology 2001;19(5):189-93.
2001: Teri E Klein; Jeffrey T Chang; M K Cho; K L Easton; R Fergerson; Micheal Hewett; Zhen Lin; Y Liu; S Liu; Diane E Oliver; Daniel L Rubin; F Shafa; Josh M Stuart; Russ B Altman
Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base.
The pharmacogenomics journal 2001;1(3):167-70.
2001: Jeffrey T Chang; Soumya Raychaudhuri; Russ B Altman
Including biological literature improves homology search.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 2001;():374-83.
1997: L Wei; Russ B Altman; Jeffrey T Chang
Using the radial distributions of physical features to compare amino acid environments and align amino acid sequences.
Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing 1997;():465-76.