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Daniel Charlier

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Trong Nguyen-Duc; Eveline Peeters; Daniel Charlier; Serge Muyldermans; Gholamreza Hassanzadeh Ghassabeh
Nanobody(R)-based chromatin immunoprecipitation/micro-array analysis for genome-wide identification of transcription factor DNA binding sites.
Amelia Vassart; Sonja-Verena Albers; Ye Hong; Alvaro Orell; Eveline Peeters; Marleen Van Wolferen; Daniel Charlier
Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator.
Qing Wei; Daniel Charlier; Andreas Dötsch; Ameer Elfarash; Daniel J Hassett; Susanne Häussler; Falk Hildebrand; Phu Nguyen Le Minh; Warunya Panmanee; Stéphane Plaisance; Sebastian Schulz; Pierre Cornelis
Global regulation of gene expression by OxyR in an important human opportunistic pathogen.

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All Publications

2013: Trong Nguyen-Duc; Eveline Peeters; Daniel Charlier; Serge Muyldermans; Gholamreza Hassanzadeh Ghassabeh
Nanobody(R)-based chromatin immunoprecipitation/micro-array analysis for genome-wide identification of transcription factor DNA binding sites.
Nucleic acids research 2013;41(5):e59.
2013: Amelia Vassart; Sonja-Verena Albers; Ye Hong; Alvaro Orell; Eveline Peeters; Marleen Van Wolferen; Daniel Charlier
Sa-Lrp from Sulfolobus acidocaldarius is a versatile, glutamine-responsive, and architectural transcriptional regulator.
MicrobiologyOpen 2013;2(1):75-93.
2012: Qing Wei; Daniel Charlier; Andreas Dötsch; Ameer Elfarash; Daniel J Hassett; Susanne Häussler; Falk Hildebrand; Phu Nguyen Le Minh; Warunya Panmanee; Stéphane Plaisance; Sebastian Schulz; Pierre Cornelis
Global regulation of gene expression by OxyR in an important human opportunistic pathogen.
Nucleic acids research 2012;40(10):4320-33.
2010: Phu Le Minh Nguyen; Indra Bervoets; Dominique Maes; Daniel Charlier
The protein-DNA contacts in RutR•carAB operator complexes.
Nucleic acids research 2010;38(18):6286-300.
2010: Abel Garcia-Pino; Sreeram Balasubramanian; Lode Wyns; Ehud Gazit; Henri De Greve; Roy David Magnuson; Daniel Charlier; Nico A J van Nuland; Remy Loris
Allostery and intrinsic disorder mediate transcription regulation by conditional cooperativity.
Cell 2010;142(1):101-11.
2010: Eveline Peeters; Daniel Charlier
The Lrp family of transcription regulators in archaea.
Archaea (Vancouver, B.C.) 2010;2010():750457.
2009: Eveline Peeters; Phu Nguyen Le Minh; Maria Foulquié-Moreno; Daniel Charlier
Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP.
Molecular microbiology 2009;74(6):1513-26.
2009: Natalie De Jonge; Abel Garcia-Pino; Lieven Buts; Sarah Haesaerts; Daniel Charlier; Klaus Zangger; Lode Wyns; Henri De Greve; Remy Loris
Rejuvenation of CcdB-poisoned gyrase by an intrinsically disordered protein domain.
Molecular cell 2009;35(2):154-63.
2009: Phu Nguyen Le Minh; Neel Devroede; Jan Massant; Dominique Maes; Daniel Charlier
Insights into the architecture and stoichiometry of Escherichia coli PepA*DNA complexes involved in transcriptional control and site-specific DNA recombination by atomic force microscopy.
Nucleic acids research 2009;37(5):1463-76.
2009: Eveline Peeters; Sonja-Verena Albers; Amelia Vassart; Arnold J M Driessen; Daniel Charlier
Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase-encoding operon and permease genes.
Molecular microbiology 2009;71(4):972-88.
2007: Marina Caldara; Phu Nguyen Le Minh; Sophie Bostoen; Jan Massant; Daniel Charlier
ArgR-dependent repression of arginine and histidine transport genes in Escherichia coli K-12.
Journal of molecular biology 2007;373(2):251-67.
2007: Eveline Peeters; Carine Wartel; Dominique Maes; Daniel Charlier
Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing.
Nucleic acids research 2007;35(2):623-33.
2006: Dominique Maes; Marjolaine Crabeel; Cécile Van De Weerdt; Joseph A Martial; Eveline Peeters; Daniel Charlier; Klaas Decanniere; Celine Vanhee; Lode Wyns; Ingrid Zegers
Crystallization of ornithine acetyltransferase from yeast by counter-diffusion and preliminary X-ray study.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 12):1294-7.
2006: Marina Caldara; Daniel Charlier; Raymond Cunin
The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation.
Microbiology (Reading, England) 2006;152(Pt 11):3343-54.
2006: Neel Devroede; Nadine Huysveld; Daniel Charlier
Mutational analysis of intervening sequences connecting the binding sites for integration host factor, PepA, PurR, and RNA polymerase in the control region of the Escherichia coli carAB operon, encoding carbamoylphosphate synthase.
Journal of bacteriology 2006;188(9):3236-45.
2006: Eveline Peeters; Ronnie Willaert; Dominique Maes; Daniel Charlier
Ss-LrpB from Sulfolobus solfataricus condenses about 100 base pairs of its own operator DNA into globular nucleoprotein complexes.
The Journal of biological chemistry 2006;281(17):11721-8.
2006: Jan Massant; Eveline Peeters; Daniel Charlier; Dominique Maes
Crystallization and preliminary X-ray diffraction analysis of the arginine repressor of the hyperthermophile Thermotoga neapolitana.
Acta crystallographica. Section F, Structural biology and crystallization communications 2006;62(Pt 1):26-8.
2005: Daniel Charlier; L Droogmans
Microbial life at high temperature, the challenges, the strategies.
Cellular and molecular life sciences : CMLS 2005;62(24):2974-84.
2005: Eveline Peeters; Bach Thi Mai Hoa; Ingrid Zegers; Daniel Charlier; Dominique Maes
Overexpression, purification, crystallization and preliminary X-ray diffraction analysis of the C-terminal domain of Ss-LrpB, a transcription regulator from Sulfolobus solfataricus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 11):985-8.
2005: Neel Devroede; Nadine Huysveld; M Sanctorum; Daniel Charlier
Dissection of the linker-2 intervening sequence in the transcriptional regulation of the Escherichia coli carab operon.
Communications in agricultural and applied biological sciences 2005;70(2):115-8.
2004: Eveline Peeters; Thia-Lin Thia-Toong; Daniel Gigot; Dominique Maes; Daniel Charlier
Ss-LrpB, a novel Lrp-like regulator of Sulfolobus solfataricus P2, binds cooperatively to three conserved targets in its own control region.
Molecular microbiology 2004;54(2):321-36.
2004: Neel Devroede; Thia-Lin Thia-Toong; Daniel Gigot; Dominique Maes; Daniel Charlier
Purine and pyrimidine-specific repression of the Escherichia coli carAB operon are functionally and structurally coupled.
Journal of molecular biology 2004;336(1):25-42.
2004: Eveline Peeters; Ronnie Willaert; Dominique Maes; Daniel Charlier
Transcription regulation in Sulfolobus solfataricus: dissection of a higher order nucleoprotein complex.
Communications in agricultural and applied biological sciences 2004;69(2):219-22.
2003: Amélie Morin; Nadine Huysveld; Frédérique Braun; Diliana DIMOVA; Vehary Sakanyan; Daniel Charlier
Hyperthermophilic Thermotoga arginine repressor binding to full-length cognate and heterologous arginine operators and to half-site targets.
Journal of molecular biology 2003;332(3):537-53.
2003: Ying Xu; Yuan Sun; Nadine Huysveld; Daniel Gigot; Nicolas Glansdorff; Daniel Charlier
Regulation of arginine biosynthesis in the psychropiezophilic bacterium Moritella profunda: in vivo repressibility and in vitro repressor-operator contact probing.
Journal of molecular biology 2003;326(2):353-69.
2002: Julius Enoru-Eta; Daniel Gigot; Nicolas Glansdorff; Daniel Charlier
High resolution contact probing of the Lrp-like DNA-binding protein Ss-Lrp from the hyperthermoacidophilic crenarchaeote Sulfolobus solfataricus P2.
Molecular microbiology 2002;45(6):1541-55.
2002: Thia-Lin Thia-Toong; Martine Roovers; Virginie Durbecq; Daniel Gigot; Nicolas Glansdorff; Daniel Charlier
Genes of de novo pyrimidine biosynthesis from the hyperthermoacidophilic crenarchaeote Sulfolobus acidocaldarius: novel organization in a bipolar operon.
Journal of bacteriology 2002;184(16):4430-41.
2002: Hui Song; Haifeng Wang; Daniel Gigot; Diliana DIMOVA; Vehary Sakanyan; Nicolas Glansdorff; Daniel Charlier
Transcription regulation in thermophilic bacteria: high resolution contact probing of Bacillus stearothermophilus and Thermotoga neapolitana arginine repressor-operator interactions.
Journal of molecular biology 2002;315(3):255-74.
2000: Daniel Charlier; Abdelaziz Kholti; Nadine Huysveld; Daniel Gigot; Dominique Maes; Thia-Lin Thia-Toong; Nicolas Glansdorff
Mutational analysis of Escherichia coli PepA, a multifunctional DNA-binding aminopeptidase.
Journal of molecular biology 2000;302(2):411-26.
2000: J Enoru-Eta; Daniel Gigot; Thia-Lin Thia-Toong; Nicolas Glansdorff; Daniel Charlier
Purification and characterization of Sa-lrp, a DNA-binding protein from the extreme thermoacidophilic archaeon Sulfolobus acidocaldarius homologous to the bacterial global transcriptional regulator Lrp.
Journal of bacteriology 2000;182(13):3661-72.
1999: Bernard Labedan; A Boyen; M Baetens; Daniel Charlier; P Chen; Raymond Cunin; V Durbeco; Nicolas Glansdorff; G Herve; Christianne Legrain; Z Liang; Cristina Purcarea; Martine Roovers; R Sanchez; T L Toong; Mark Van de Casteele; F Van Vliet; Y Xu; Y F Zhang
The evolutionary history of carbamoyltransferases: A complex set of paralogous genes was already present in the last universal common ancestor.
Journal of molecular evolution 1999;49(4):461-73.
1999: I M Karaivanova; Pierre Weigel; Masayuki Takahashi; C Fort; A Versavaud; Gregory D Van Duyne; Daniel Charlier; JN Hallet; Nicolas Glansdorff; Vehary Sakanyan
Mutational analysis of the thermostable arginine repressor from Bacillus stearothermophilus: dissecting residues involved in DNA binding properties.
Journal of molecular biology 1999;291(4):843-55.
1999: Virginie Durbecq; Thia-Lin Thia-Toong; Daniel Charlier; Vincent Villeret; Martine Roovers; Ruddy Wattiez; Christianne Legrain; Nicolas Glansdorff
Aspartate carbamoyltransferase from the thermoacidophilic archaeon Sulfolobus acidocaldarius. Cloning, sequence analysis, enzyme purification and characterization.
European journal of biochemistry / FEBS 1999;264(1):233-41.
1999: J Ni; Vehary Sakanyan; Daniel Charlier; Nicolas Glansdorff; Gregory D Van Duyne
Structure of the arginine repressor from Bacillus stearothermophilus.
Nature structural biology 1999;6(5):427-32.
1999: S Delannay; Daniel Charlier; Catherine Tricot; Vincent Villeret; A Piérard; Victor Stalon
Serine 948 and threonine 1042 are crucial residues for allosteric regulation of Escherichia coli carbamoylphosphate synthetase and illustrate coupling effects of activation and inhibition pathways.
Journal of molecular biology 1999;286(4):1217-28.
1998: Abdelaziz Kholti; Daniel Charlier; Daniel Gigot; Nadine Huysveld; Martine Roovers; Nicolas Glansdorff
pyrH-encoded UMP-kinase directly participates in pyrimidine-specific modulation of promoter activity in Escherichia coli.
Journal of molecular biology 1998;280(4):571-82.
1998: H Wang; Nicolas Glansdorff; Daniel Charlier
The arginine repressor of Escherichia coli K-12 makes direct contacts to minor and major groove determinants of the operators.
Journal of molecular biology 1998;277(4):805-24.
1997: Daniel Charlier; Martine Roovers; Thia-Lin Thia-Toong; Virginie Durbecq; Nicolas Glansdorff
Cloning and identification of the Sulfolobus solfataricus lrp gene encoding an archaeal homologue of the eubacterial leucine-responsive global transcriptional regulator Lrp.
Gene 1997;201(1-2):63-8.
1997: Michel Dion; Daniel Charlier; H Wang; Daniel Gigot; A Savchenko; JN Hallet; Nicolas Glansdorff; Vehary Sakanyan
The highly thermostable arginine repressor of Bacillus stearothermophilus: gene cloning and repressor-operator interactions.
Molecular microbiology 1997;25(2):385-98.
1996: A Savchenko; Daniel Charlier; Michel Dion; Pierre Weigel; J N Hallet; C Holtham; S Baumberg; Nicolas Glansdorff; Vehary Sakanyan
The arginine operon of Bacillus stearothermophilus: characterization of the control region and its interaction with the heterologous B. subtilis arginine repressor.
Molecular & general genetics : MGG 1996;252(1-2):69-78.
1995: Daniel Charlier; G Hassanzadeh; A Kholti; Daniel Gigot; A Piérard; Nicolas Glansdorff
carP, involved in pyrimidine regulation of the Escherichia coli carbamoylphosphate synthetase operon encodes a sequence-specific DNA-binding protein identical to XerB and PepA, also required for resolution of ColEI multimers.
Journal of molecular biology 1995;250(4):392-406.
1995: Daniel Charlier; Daniel Gigot; N Huysveld; Martine Roovers; A Piérard; Nicolas Glansdorff
Pyrimidine regulation of the Escherichia coli and Salmonella typhimurium carAB operons: CarP and integration host factor (IHF) modulate the methylation status of a GATC site present in the control region.
Journal of molecular biology 1995;250(4):383-91.
1994: Daniel Charlier; N Huysveld; Martine Roovers; Nicolas Glansdorff
On the role of the Escherichia coli integration host factor (IHF) in repression at a distance of the pyrimidine specific promoter P1 of the carAB operon.
Biochimie 1994;76(10-11):1041-51.
1993: Vehary Sakanyan; L Desmarez; Christianne Legrain; Daniel Charlier; I Mett; Anahit Ghochikyan; A Savchenko; A Boyen; Paul Falmagne; A Pierard
Gene cloning, sequence analysis, purification, and characterization of a thermostable aminoacylase from Bacillus stearothermophilus.
Applied and environmental microbiology 1993;59(11):3878-88.
1993: Vehary Sakanyan; Daniel Charlier; Christianne Legrain; Anahit Ghochikyan; I Mett; A Piérard; Nicolas Glansdorff
Primary structure, partial purification and regulation of key enzymes of the acetyl cycle of arginine biosynthesis in Bacillus stearothermophilus: dual function of ornithine acetyltransferase.
Journal of general microbiology 1993;139(3):393-402.
1993: Daniel Charlier; Martine Roovers; Daniel Gigot; N Huysveld; A Piérard; Nicolas Glansdorff
Integration host factor (IHF) modulates the expression of the pyrimidine-specific promoter of the carAB operons of Escherichia coli K12 and Salmonella typhimurium LT2.
Molecular & general genetics : MGG 1993;237(1-2):273-86.
1992: Daniel Charlier; Martine Roovers; F Van Vliet; A Boyen; Raymond Cunin; Y Nakamura; Nicolas Glansdorff; A Piérard
Arginine regulon of Escherichia coli K-12. A study of repressor-operator interactions and of in vitro binding affinities versus in vivo repression.
Journal of molecular biology 1992;226(2):367-86.
1992: A Boyen; Daniel Charlier; J Charlier; Vehary Sakanyan; I Mett; Nicolas Glansdorff
Acetylornithine deacetylase, succinyldiaminopimelate desuccinylase and carboxypeptidase G2 are evolutionarily related.
Gene 1992;116(1):1-6.
1988: Daniel Charlier; G Weyens; Martine Roovers; J Piette; C Bocquet; A Piérard; Nicolas Glansdorff
Molecular interactions in the control region of the carAB operon encoding Escherichia coli carbamoylphosphate synthetase.
Journal of molecular biology 1988;204(4):867-77.
1988: Martine Roovers; Daniel Charlier; André Feller; Daniel Gigot; F Holemans; W Lissens; A Piérard; Nicolas Glansdorff
carP, a novel gene regulating the transcription of the carbamoylphosphate synthetase operon of Escherichia coli.
Journal of molecular biology 1988;204(4):857-65.
1988: G Weyens; Daniel Charlier; Martine Roovers; A Piérard; Nicolas Glansdorff
On the role of the Shine-Dalgarno sequence in determining the efficiency of translation initiation at a weak start codon in the car operon of Escherichia coli K12.
Journal of molecular biology 1988;204(4):1045-8.
1985: Raymond Cunin; A Jacobs; Daniel Charlier; Marjolaine Crabeel; Guy Hervé; Nicolas Glansdorff; A Piérard
Structure-function relationship in allosteric aspartate carbamoyltransferase from Escherichia coli. I. Primary structure of a pyrI gene encoding a modified regulatory subunit.
Journal of molecular biology 1985;186(4):707-13.
1984: J Piette; H Nyunoya; C J Lusty; Raymond Cunin; G Weyens; Marjolaine Crabeel; Daniel Charlier; Nicolas Glansdorff; A Piérard
DNA sequence of the carA gene and the control region of carAB: tandem promoters, respectively controlled by arginine and the pyrimidines, regulate the synthesis of carbamoyl-phosphate synthetase in Escherichia coli K-12.
Proceedings of the National Academy of Sciences of the United States of America 1984;81(13):4134-8.
1983: Daniel Charlier; Y Severne; M Zafarullah; Nicolas Glansdorff
Turn-on of inactive genes by promoter recruitment in Escherichia coli: inverted repeats resulting in artificial divergent operons.
Genetics 1983;105(3):469-88.
1982: J Piette; Raymond Cunin; A Boyen; Daniel Charlier; Marjolaine Crabeel; F Van Vliet; Nicolas Glansdorff; C Squires; Catherine L Squires
The regulatory region of the divergent argECBH operon in Escherichia coli K-12.
Nucleic acids research 1982;10(24):8031-48.
1982: Daniel Charlier; J Piette; Nicolas Glansdorff
IS3 can function as a mobile promoter in E. coli.
Nucleic acids research 1982;10(19):5935-48.
1982: G Beny; A Boyen; Daniel Charlier; W Lissens; André Feller; Nicolas Glansdorff
Promoter mapping and selection of operator mutants by using insertion of bacteriophage Mu in the argECBH divergent operon of Escherichia coli K-12.
Journal of bacteriology 1982;151(1):62-7.
1982: J Piette; Raymond Cunin; F Van Vliet; Daniel Charlier; Marjolaine Crabeel; Y Ota; Nicolas Glansdorff
Homologous control sites and DNA transcription starts in the related argF and argI genes of Escherichia coli K12.
The EMBO journal 1982;1(7):853-7.
1981: André Feller; A Piérard; Nicolas Glansdorff; Daniel Charlier; Marjolaine Crabeel
Mutation of gene encoding regulatory polypeptide of aspartate carbamoyltransferase.
Nature 1981;292(5821):370-3.
1981: M Zafarullah; Daniel Charlier; Nicolas Glansdorff
Insertion of IS3 can "turn-on" a silent gene in Escherichia coli.
Journal of bacteriology 1981;146(1):415-7.
1981: N Glansdorff; Daniel Charlier; M Zafarullah
Activation of gene expression by IS2 and IS3.
Cold Spring Harbor symposia on quantitative biology 1981;45 Pt 1():153-6.
1980: Marjolaine Crabeel; Daniel Charlier; G Weyens; André Feller; A Piérard; Nicolas Glansdorff
Use of gene cloning to determine polarity of an operon: genes carAB of Escherichia coli.
Journal of bacteriology 1980;143(2):921-5.
1980: Daniel Gigot; Marjolaine Crabeel; André Feller; Daniel Charlier; W Lissens; Nicolas Glansdorff; A Piérard
Patterns of polarity in the Escherichia coli car AB gene cluster.
Journal of bacteriology 1980;143(2):914-20.