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Kandala Chary

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Nuclear Magnetic Resonance, Biomolecular

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Magnetic Resonance Spectroscopy

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TOP 3
Venkatraman Ramanujam; Kandala V R Chary; Sri Rama Koti Ainavarapu
Iterative cloning, overexpression, purification and isotopic labeling of an engineered dimer of a Ca(2+)-binding protein of the βγ-crystallin superfamily from Methanosarcina acetivorans.
Manish Shukla; Himanshu Singh; Srikanth Tirumani; Kandala V R Chary; Renu Minda; Basuthkar J Rao
UVI31+ is a DNA endonuclease that dynamically localizes to chloroplast pyrenoids in C. reinhardtii.
Ravi P Barnwal; Geetika Agarwal; Kandala V R Chary
Guanidine-HCl dependent structural unfolding of M-crystallin: fluctuating native state like topologies and intermolecular association.

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All Publications

2012: Venkatraman Ramanujam; Kandala V R Chary; Sri Rama Koti Ainavarapu
Iterative cloning, overexpression, purification and isotopic labeling of an engineered dimer of a Ca(2+)-binding protein of the βγ-crystallin superfamily from Methanosarcina acetivorans.
Protein expression and purification 2012;84(1):116-22.
2012: Manish Shukla; Himanshu Singh; Srikanth Tirumani; Kandala V R Chary; Renu Minda; Basuthkar J Rao
UVI31+ is a DNA endonuclease that dynamically localizes to chloroplast pyrenoids in C. reinhardtii.
PloS one 2012;7(12):e51913.
2012: Ravi P Barnwal; Geetika Agarwal; Kandala V R Chary
Guanidine-HCl dependent structural unfolding of M-crystallin: fluctuating native state like topologies and intermolecular association.
PloS one 2012;7(12):e42948.
2011: Atul K Srivastava; Kandala V R Chary
Conformational heterogeneity and dynamics in a βγ-crystallin from Hahella chejuensis.
Biophysical chemistry 2011;157(1-3):7-15.
2011: Kousik Chandra; Sourajit M Mustafi; Subramanian Muthukumar; Kandala V R Chary
Site-specific free energy changes in proteins upon ligand binding by nuclear magnetic resonance: Ca2+ -displacement by Ln3+ in a Ca2+ -binding protein from Entamoeba histolytica.
Chemical biology & drug design 2011;77(4):272-80.
2011: Ravi P Barnwal; K Manjula Devi; Geetika Agarwal; Yogendra Sharma; Kandala V R Chary
Temperature-dependent oligomerization in M-crystallin: lead or lag toward cataract, an NMR perspective.
Proteins 2011;79(2):569-80.
2011: Ashok K Rout; Narendra Padhan; Ravi P Barnwal; A Bhattacharya; Kandala V R Chary
Calmodulin-like protein from Entamoeba histolytica: solution structure and calcium-binding properties of a partially folded protein.
Biochemistry 2011;50(2):181-93.
2011: Kousik Chandra; Venkatesh Ramakrishnan; Yogendra Sharma; Kandala V R Chary
N-terminal myristoylation alters the calcium binding pathways in neuronal calcium sensor-1.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2011;16(1):81-95.
2010: Atul K Srivastava; Maroor K Jobby; Kandala V R Chary
A natively unfolded βγ-crystallin domain from Hahella chejuensis.
Biochemistry 2010;49(45):9746-55.
2010: Ashok K Rout; Ravi P Barnwal; Geetika Agarwal; Kandala V R Chary
Root-mean-square-deviation-based rapid backbone resonance assignments in proteins.
Magnetic resonance in chemistry : MRC 2010;48(10):793-7.
2010: Ashok K Rout; R Minda; D Peri; V Ramakrishnan; S K Bhattacharjee; Basuthkar J Rao; Kandala V R Chary
Sequence specific 1H, 13C and 15N backbone resonance assignments of UVI31+ from Chlamydomonas reinhardtii.
Biomolecular NMR assignments 2010;4(2):171-4.
2010: Atul K Srivastava; Kandala V R Chary
Sequence specific 1H, 13C and 15N resonance assignments of hahellin in 8 M urea.
Biomolecular NMR assignments 2010;4(2):163-5.
2010: Kousik Chandra; Venkatesh Ramakrishnan; Yogendra Sharma; Kandala V R Chary
Resonance assignments of myristoylated and non-myristoylated neuronal calcium sensor-1(NCS-1) embedded in a membrane.
Biomolecular NMR assignments 2010;4(2):155-8.
2009: Namrata Dixit; Lallan Mishra; Sourajit M Mustafi; Kandala V R Chary; Hirohiko Houjou
Synthesis of a ruthenium(II) bipyridyl complex coordinated by a functionalized Schiff base ligand: characterization, spectroscopic and isothermal titration calorimetry measurements of M2+ binding and sensing (M2+=Ca2+, Mg2+).
Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy 2009;73(1):29-34.
2009: Ravi P Barnwal; Geetika Agarwal; Yogendra Sharma; Kandala V R Chary
Complete backbone assignment of a Ca2+-binding protein of the betagamma-crystallin superfamily from Methanosarcina acetivorans, at two denaturant concentrations.
Biomolecular NMR assignments 2009;3(1):107-10.
2009: Swati S Chitnis; Chellasamy Selvaakumar; Dhanashree D Jagtap; Ravi P Barnwal; Kandala V R Chary; Smita D Mahale; Tarala Nandedkar
Interaction of follicle-stimulating hormone (FSH) receptor binding inhibitor-8: a novel FSH-binding inhibitor, with FSH and its receptor.
Chemical biology & drug design 2009;73(6):637-43.
2009: Sourajit Mitra Mustafi; Ritu Bansal Mutalik; Ruchi Jain; Kousik Chandra; Alok Bhattacharya; Kandala V R Chary
Structural characterization of a novel Ca2+-binding protein from Entamoeba histolytica: structural basis for the observed functional differences with its isoform.
Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry 2009;14(3):471-83.
2009: Ravi P Barnwal; Maroor K Jobby; K Manjula Devi; Yogendra Sharma; Kandala V R Chary
Solution structure and calcium-binding properties of M-crystallin, a primordial betagamma-crystallin from archaea.
Journal of molecular biology 2009;386(3):675-89.
2008: Atul K Srivastava; Yogendra Sharma; Kandala V R Chary
Sequence specific 1H, 13C, and 15N resonance assignments of Hahellin from Hahella chejuensis, a putative member of the betagamma-crystallin superfamily.
Biomolecular NMR assignments 2008;2(2):151-3.
2008: Ravi P Barnwal; Hanudatta S Atreya; Kandala V R Chary
Chemical shift based editing of CH3 groups in fractionally 13C-labelled proteins using GFT (3, 2)D CT-HCCH-COSY: stereospecific assignments of CH3 groups of Val and Leu residues.
Journal of biomolecular NMR 2008;42(2):149-54.
2008: Ravi P Barnwal; Ashok K Rout; Hanudatta S Atreya; Kandala V R Chary
Identification of C-terminal neighbours of amino acid residues without an aliphatic 13Cgamma as an aid to NMR assignments in proteins.
Journal of biomolecular NMR 2008;41(4):191-7.
2008: Ashok K Rout; Ravi P Barnwal; Narendra Padhan; Alok Bhattacharya; Kandala V R Chary
Sequence specific 1H, 13C and 15N resonance assignments of a calmodulin-like calcium-binding protein from the protozoan parasite Entamoeba histolytica (EhCaM).
Biomolecular NMR assignments 2008;2(1):77-9.
2008: Atul K Srivastava; Yogendra Sharma; Kandala V R Chary
Overexpression, on-column refolding and isotopic labeling of Hahellin from Hahella chejuensis, a putative member of the betagamma-crystallin superfamily.
Protein expression and purification 2008;58(2):269-74.
2008: Poluri Krishna Mohan; Sulakshana Mukherjee; Kandala V R Chary
Differential native state ruggedness of the two Ca2+-binding domains in a Ca2+ sensor protein.
Proteins 2008;70(4):1147-53.
2007: Ravi P Barnwal; Ashok K Rout; Kandala V R Chary; Hanudatta S Atreya
Rapid measurement of 3J(H N-H alpha) and 3J(N-H beta) coupling constants in polypeptides.
Journal of biomolecular NMR 2007;39(4):259-63.
2007: Sulakshana Mukherjee; Poluri Krishna Mohan; Kavita Kuchroo; Kandala V R Chary
Energetics of the native energy landscape of a two-domain calcium sensor protein: distinct folding features of the two domains.
Biochemistry 2007;46(35):9911-9.
2007: Sulakshana Mukherjee; Poluri Krishna Mohan; Kandala V R Chary
Magnesium promotes structural integrity and conformational switching action of a calcium sensor protein.
Biochemistry 2007;46(12):3835-45.
2006: Sourajit M Mustafi; Sulakshana Mukherjee; Kandala V R Chary; Gabriele Cavallaro
Structural basis for the observed differential magnetic anisotropic tensorial values in calcium binding proteins.
Proteins 2006;65(3):656-69.
2006: Akshaya K Meher; Naresh Chandra Bal; Kandala V R Chary; Ashish Arora
Mycobacterium tuberculosis H37Rv ESAT-6-CFP-10 complex formation confers thermodynamic and biochemical stability.
The FEBS journal 2006;273(7):1445-62.
2006: Ravi P Barnwal; Tista R Chaudhuri; S Nanduri; J Qin; Kandala V R Chary
Methyl dynamics for understanding hydrophobic core packing of dynamically different motifs of double-stranded RNA binding domain of protein kinase R.
Proteins 2006;62(2):501-8.
2006: Sulakshana Mukherjee; Dasari Muralidhar; Hanudatta S Atreya; Thomas Szyperski; Andreas Jeromin; Yogendra Sharma; Kandala V R Chary
1H, 13C, and 15N chemical shift assignments of neuronal calcium sensor-1, a multi-functional calcium-binding protein.
Journal of biomolecular NMR 2006;36 Suppl 1():48.
2006: Ravi P Barnwal; Maroor K Jobby; Yogendra Sharma; Kandala V R Chary
NMR assignment of M-crystallin: a novel Ca2+ binding protein of the betagamma-crystallin superfamily from Methanosarcina acetivorans.
Journal of biomolecular NMR 2006;36 Suppl 1():32.
2005: Subramanian Jyothi; Sourajit M Mustafi; Kandala V R Chary; Rajani R Joshi
Structure prediction of a multi-domain EF-hand Ca2+ binding protein by PROPAINOR.
Journal of molecular modeling 2005;11(6):481-8.
2005: Sulakshana Mukherjee; Kavita Kuchroo; Kandala V R Chary
Structural characterization of the apo form of a calcium binding protein from Entamoeba histolytica by hydrogen exchange and its folding to the holo state.
Biochemistry 2005;44(34):11636-45.
2005: Dasari Muralidhar; Maroor K Jobby; Kannan Krishnan; Vallabhaneni Annapurna; Kandala V R Chary; Andreas Jeromin; Yogendra Sharma
Equilibrium unfolding of neuronal calcium sensor-1: N-terminal myristoylation influences unfolding and reduces protein stiffening in the presence of calcium.
The Journal of biological chemistry 2005;280(16):15569-78.
2005: Ritu Bansal-Mutalik; Sourajit M Mustafi; Alok Bhattacharya; Kandala V R Chary
Sequence specific 1HN, 13C and 15N resonance assignments of a novel calcium-binding protein from Entamoeba histolytica.
Journal of biomolecular NMR 2005;31(4):379-80.
2005: Sulakshana Mukherjee; Sourajit M Mustafi; Hanudatta S Atreya; Kandala V R Chary
Measurement of 1J(Ni,Calpha(i)), 1J(Ni,C'i-1), 2J(Ni,Calpha(i-1)), 2J(H(N)i,C'i-1) and 2J(H(N)i,Calpha(i)) values in 13C/15N-labeled proteins.
Magnetic resonance in chemistry : MRC 2005;43(4):326-9.
2004: Sourajit M Mustafi; Sulakshana Mukherjee; Kandala V R Chary; Cristina Del Bianco; Claudio Luchinat
Energetics and mechanism of Ca2+ displacement by lanthanides in a calcium binding protein.
Biochemistry 2004;43(29):9320-31.
2004: Andreas Jeromin; Dasari Muralidhar; Malavika Nair Parameswaran; John Roder; Thomas Fairwell; suzanne scarlata; Louisa Dowal; Sourajit M Mustafi; Kandala V R Chary; Yogendra Sharma
N-terminal myristoylation regulates calcium-induced conformational changes in neuronal calcium sensor-1.
The Journal of biological chemistry 2004;279(26):27158-67.
2003: Arnob Dutta; Basuthkar J Rao; Kandala V R Chary
Overexpression and purification of isotopically labeled Escherichia coli MutH for NMR studies.
Protein expression and purification 2003;29(2):252-8.
2003: Hanudatta S Atreya; Sulakshana Mukherjee; Kandala V R Chary; Yong-Min Lee; Claudio Luchinat
Structural basis for sequential displacement of Ca(2+) by Yb(3+) in a protozoan EF-hand calcium binding protein.
Protein science : a publication of the Protein Society 2003;12(3):412-25.
2002: Sukesh R Bhaumik; Kandala V R Chary
Molecular dynamics and mechanics calculations on a DNA duplex with A(+)-C, G-T and T-C mispairs.
Journal of biomolecular structure & dynamics 2002;20(2):199-206.
2002: Sunita Ramanathan; Kandala V R Chary; Basuthkar J Rao
Klenow exo-, as opposed to exo+, traverses through G-G:C triplex by melting G-G base pairs.
Biochemical and biophysical research communications 2002;295(3):730-6.
2002: Mahua Ghosh; Nidhi Rumpal; Umesh Varshney; Kandala V R Chary
Structural basis for poor uracil excision from hairpin DNA. An NMR study.
European journal of biochemistry / FEBS 2002;269(7):1886-94.
2002: V Rani Parvathy; Sukesh R Bhaumik; Kandala V R Chary; Girjesh Govil; Keliang Liu; Frank B Howard; H Todd Miles
NMR structure of a parallel-stranded DNA duplex at atomic resolution.
Nucleic acids research 2002;30(7):1500-11.
2002: Sunita Ramanathan; Basuthkar J Rao; Kandala V R Chary
A novel approach for uniform (13)C and (15)N labeling of DNA for NMR studies.
Biochemical and biophysical research communications 2002;290(3):928-32.
2002: Kandala V R Chary; Hanudatta S Atreya
Structure determination of proteins in solution by nuclear magnetic resonance spectroscopy.
Journal of postgraduate medicine 2002;48(1):83-7.
2001: Hanudatta S Atreya; SC Sahu; A Bhattacharya; Kandala V R Chary; Girjesh Govil
NMR derived solution structure of an EF-hand calcium-binding protein from Entamoeba Histolytica.
Biochemistry 2001;40(48):14392-403.
2001: S Ramanathan; Kandala V R Chary; Basuthkar J Rao
Incoming nucleotide binds to Klenow ternary complex leading to stable physical sequestration of preceding dNTP on DNA.
Nucleic acids research 2001;29(10):2097-105.
2001: Hanudatta S Atreya; Kandala V R Chary
Selective 'unlabeling' of amino acids in fractionally 13C labeled proteins: an approach for stereospecific NMR assignments of CH3 groups in Val and Leu residues.
Journal of biomolecular NMR 2001;19(3):267-72.
2000: Hanudatta S Atreya; SC Sahu; Kandala V R Chary; Girjesh Govil
A tracked approach for automated NMR assignments in proteins (TATAPRO).
Journal of biomolecular NMR 2000;17(2):125-36.
2000: Mahua Ghosh; N Vinay Kumar; Umesh Varshney; Kandala V R Chary
Structural basis for uracil DNA glycosylase interaction with uracil: NMR study.
Nucleic acids research 2000;28(9):1906-12.
1999: SC Sahu; A Bhattacharya; Kandala V R Chary; Girjesh Govil
Secondary structure of a calcium binding protein (CaBP) from Entamoeba histolytica.
FEBS letters 1999;459(1):51-6.
1999: Mahua Ghosh; NV Kumar; Umesh Varshney; Kandala V R Chary
Structural characterisation of a uracil containing hairpin DNA by NMR and molecular dynamics.
Nucleic acids research 1999;27(19):3938-44.
1999: G Karthikeyan; Kandala V R Chary; Basuthkar J Rao
Fold-back structures at the distal end influence DNA slippage at the proximal end during mononucleotide repeat expansions.
Nucleic acids research 1999;27(19):3851-8.
1999: SC Sahu; Hanudatta S Atreya; S Chauhan; A Bhattacharya; Kandala V R Chary; Girjesh Govil
Sequence-specific 1H, 13C and 15N assignments of a calcium binding protein from Entamoeba histolytica.
Journal of biomolecular NMR 1999;14(1):93-4.
1998: Sukesh R Bhaumik; Kandala V R Chary; Girjesh Govil
Molecular mechanics calculations on a triple stranded DNA involving C+.G-T and T.A+-C mismatched base triples.
Journal of biomolecular structure & dynamics 1998;16(3):527-34.
1998: Sukesh R Bhaumik; Kandala V R Chary; Girjesh Govil; Keliang Liu; H Todd Miles
A novel palindromic triple-stranded structure formed by homopyrimidine dodecamer d-CTTCTCCTCTTC and homopurine hexamer d-GAAGAG.
Nucleic acids research 1998;26(12):2981-8.
1997: V K Rastogi; Kandala V R Chary; Girjesh Govil; F B Howard; H Todd Miles
NMR structural characterisation of a hairpin DNA with two-base loop: solution conformation of d-GGTACIAGTACC.
Indian journal of biochemistry & biophysics 1997;34(4):329-35.
1997: Sukesh R Bhaumik; Kandala V R Chary; Girjesh Govil; Keliang Liu; H Todd Miles
Homopurine and homopyrimidine strands complementary in parallel orientation form an antiparallel duplex at neutral pH with A-C, G-T, and T-C mismatched base pairs.
Biopolymers 1997;41(7):773-84.
1995: A K Sau; Kandala V R Chary; Girjesh Govil; C Q Chen; F B Howard; H Todd Miles
Evidence for A+(anti)-G(syn) mismatched base-pairing in d-GGTAAGCGTACC.
FEBS letters 1995;377(3):301-5.
1995: Sukesh R Bhaumik; Kandala V R Chary; Girjesh Govil; K Liu; H Todd Miles
NMR characterisation of a triple stranded complex formed by homo-purine and homo-pyrimidine DNA strands at 1:1 molar ratio and acidic pH.
Nucleic acids research 1995;23(20):4116-21.
1990: Ramakrishna V Hosur; Kandala V R Chary; A Saran; Girjesh Govil; H Todd Miles
Determination of solution conformation of DNA backbone: application of homonuclear (J, delta) spectroscopy.
Biopolymers 1990;29(6-7):953-9.
1989: Kandala V R Chary; S Modi; Ramakrishna V Hosur; Girjesh Govil; C Q Chen; H Todd Miles
Quantification of DNA structure from NMR data: conformation of d-ACATCGATGT.
Biochemistry 1989;28(12):5240-9.
1988: Kandala V R Chary; S Modi
Analysis of intrasugar interproton NOESY cross-peaks as an aid to determine sugar geometries in DNA fragments.
FEBS letters 1988;233(2):319-25.
1988: Kandala V R Chary; Ramakrishna V Hosur; Girjesh Govil; C Q Chen; H Todd Miles
Sequence-specific solution structure of d-GGTACGCGTACC.
Biochemistry 1988;27(10):3858-67.
1987: Kandala V R Chary; Ramakrishna V Hosur; Girjesh Govil; Z K Tan; H Todd Miles
Novel solution conformation of DNA observed in d(GAATTCGAATTC) by two-dimensional NMR spectroscopy.
Biochemistry 1987;26(5):1315-22.
1986: Ramakrishna V Hosur; A Sheth; Kandala V R Chary; M Ravikumar; Girjesh Govil; Z K Tan; H Todd Miles
A novel structure observed in d-GAATTCCCGAATTC by 2D NMR.
Biochemical and biophysical research communications 1986;139(3):1224-32.
1986: Ramakrishna V Hosur; M Ravikumar; Kandala V R Chary; A Sheth; Girjesh Govil; T Zu-Kun; H Todd Miles
Solution structure of d-GAATTCGAATTC by 2D NMR. A new approach to determination of sugar geometries in DNA segments.
FEBS letters 1986;205(1):71-6.
1986: Kandala V R Chary; S Srivastava; Ramakrishna V Hosur; K B Roy; Girjesh Govil
Molecular conformation of gonadoliberin using two-dimensional NMR spectroscopy.
European journal of biochemistry / FEBS 1986;158(2):323-32.