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Jianhan Chen

Research Profile

Concepts & Ideas

Physiology

Protein Folding

Activities & Behaviors

Chemicals & Drugs

Phenomena

Genes & Molecular Sequences

Amino Acid Sequences

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Publications

TOP 3
Chester McDowell; Jianlin Chen; Jianhan Chen
Potential conformational heterogeneity of p53 bound to S100B(ββ).
Debabani Ganguly; Luigi Iconaru; Richard W Kriwacki; Steve Otieno; Brett Waddell; Jianhan Chen
Electrostatically accelerated coupled binding and folding of intrinsically disordered proteins.
Jianhan Chen
Towards the physical basis of how intrinsic disorder mediates protein function.

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All Publications

2013: Chester McDowell; Jianlin Chen; Jianhan Chen
Potential conformational heterogeneity of p53 bound to S100B(ββ).
Journal of molecular biology 2013;425(6):999-1010.
2012: Debabani Ganguly; Luigi Iconaru; Richard W Kriwacki; Steve Otieno; Brett Waddell; Jianhan Chen
Electrostatically accelerated coupled binding and folding of intrinsically disordered proteins.
Journal of molecular biology 2012;422(5):674-84.
2012: Jianhan Chen
Towards the physical basis of how intrinsic disorder mediates protein function.
Archives of biochemistry and biophysics 2012;524(2):123-31.
2012: U Bukovnik; Jianhan Chen; Gabriel A Cook; J Gao; Takeo Iwamoto; Bruce D Schultz; M B Seabra; Lalida P Shank; John M Tomich
Structural and biophysical properties of a synthetic channel-forming peptide: designing a clinically relevant anion selective pore.
Biochimica et biophysica acta 2012;1818(4):1039-48.
2012: Sushanth Gudlur; Yasuaki Hiromasa; Takeo Iwamoto; Pinakin Sukthankar; L Adriana Avila; Jianhan Chen; Jian Gao; John M Tomich
Peptide nanovesicles formed by the self-assembly of branched amphiphilic peptides.
PloS one 2012;7(9):e45374.
2012: Weihong Zhang; Debabani Ganguly; Jianhan Chen
Residual structures, conformational fluctuations, and electrostatic interactions in the synergistic folding of two intrinsically disordered proteins.
PLoS computational biology 2012;8(1):e1002353.
2012: Debabani Ganguly; Weihong Zhang; Jianhan Chen
Synergistic folding of two intrinsically disordered proteins: searching for conformational selection.
Molecular bioSystems 2012;8(1):198-209.
2011: Debabani Ganguly; Jianhan Chen
Topology-based modeling of intrinsically disordered proteins: balancing intrinsic folding and intermolecular interactions.
Proteins 2011;79(4):1251-66.
2011: Jianhan Chen; Anna Zolkiewska
Force-induced unfolding simulations of the human Notch1 negative regulatory region: possible roles of the heterodimerization domain in mechanosensing.
PloS one 2011;6(7):e22837.
2010: Alvaro I Herrera; Ahlam Al-Rawi; Gabriel A Cook; Jian Gao; Takeo Iwamoto; Om Prakash; John M Tomich; Jianhan Chen
Structural characterization of two pore-forming peptides: consequences of introducing a C-terminal tryptophan.
Proteins 2010;78(10):2238-50.
2010: Mayako Michino; Jianhan Chen; Raymond C Stevens; Charles L Brooks
FoldGPCR: structure prediction protocol for the transmembrane domain of G protein-coupled receptors from class A.
Proteins 2010;78(10):2189-201.
2010: Timothy H Click; Debabani Ganguly; Jianhan Chen
Intrinsically disordered proteins in a physics-based world.
International journal of molecular sciences 2010;11(12):5292-309.
2009: Debabani Ganguly; Jianhan Chen
Structural interpretation of paramagnetic relaxation enhancement-derived distances for disordered protein states.
Journal of molecular biology 2009;390(3):467-77.
2009: Debabani Ganguly; Jianhan Chen
Atomistic details of the disordered states of KID and pKID. Implications in coupled binding and folding.
Journal of the American Chemical Society 2009;131(14):5214-23.
2009: Jianhan Chen
Intrinsically disordered p53 extreme C-terminus binds to S100B(betabeta) through "fly-casting".
Journal of the American Chemical Society 2009;131(6):2088-9.
2008: Jinhyuk Lee; Jianhan Chen; Charles L Brooks; Wonpil Im
Application of solid-state NMR restraint potentials in membrane protein modeling.
Journal of magnetic resonance (San Diego, Calif. : 1997) 2008;193(1):68-76.
2008: Jianhan Chen; Charles L Brooks; Jana Khandogin
Recent advances in implicit solvent-based methods for biomolecular simulations.
Current opinion in structural biology 2008;18(2):140-8.
2008: Jianhan Chen; Charles L Brooks
Implicit modeling of nonpolar solvation for simulating protein folding and conformational transitions.
Physical chemistry chemical physics : PCCP 2008;10(4):471-81.
2008: Jianhan Chen; Charles L Brooks; Harold A Scheraga
Revisiting the carboxylic acid dimers in aqueous solution: interplay of hydrogen bonding, hydrophobic interactions, and entropy.
The journal of physical chemistry. B 2008;112(2):242-9.
2007: Jianhan Chen; Charles L Brooks
Can molecular dynamics simulations provide high-resolution refinement of protein structure?
Proteins 2007;67(4):922-30.
2007: Jianhan Chen; Charles L Brooks
Critical importance of length-scale dependence in implicit modeling of hydrophobic interactions.
Journal of the American Chemical Society 2007;129(9):2444-5.
2006: Jana Khandogin; Jianhan Chen; Charles L Brooks
Exploring atomistic details of pH-dependent peptide folding.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(49):18546-50.
2006: Jianhan Chen; Wonpil Im; Charles L Brooks
Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field.
Journal of the American Chemical Society 2006;128(11):3728-36.
2005: Jianhan Chen; Wonpil Im; Charles L Brooks
Application of torsion angle molecular dynamics for efficient sampling of protein conformations.
Journal of computational chemistry 2005;26(15):1565-78.
2005: Wonpil Im; Jianhan Chen; Charles L Brooks
Peptide and protein folding and conformational equilibria: theoretical treatment of electrostatics and hydrogen bonding with implicit solvent models.
Advances in protein chemistry 2005;72():173-98.
2005: Jianhan Chen; Hyung-Sik Won; Wonpil Im; H Jane Dyson; Charles L Brooks
Generation of native-like protein structures from limited NMR data, modern force fields and advanced conformational sampling.
Journal of biomolecular NMR 2005;31(1):59-64.
2004: Jianhan Chen; Wonpil Im; Charles L Brooks
Refinement of NMR structures using implicit solvent and advanced sampling techniques.
Journal of the American Chemical Society 2004;126(49):16038-47.
2004: Jianhan Chen; Charles L Brooks; Peter Wright
Model-free analysis of protein dynamics: assessment of accuracy and model selection protocols based on molecular dynamics simulation.
Journal of biomolecular NMR 2004;29(3):243-57.