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Jeff Chen

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Computer Simulation

Physiology

Protein Folding

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Adsorption

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All Publications

2013: Ying Jiang; Jeff Z Y Chen
Influence of chain rigidity on the phase behavior of wormlike diblock copolymers.
Physical review letters 2013;110(13):138305.
2012: Jeff Z Y Chen
Structure of a micropipette-aspirated vesicle determined from the bending-energy model.
Physical review. E, Statistical, nonlinear, and soft matter physics 2012;86(4 Pt 1):041904.
2012: Jeff Z Y Chen
Pulling or compressing a vesicle by force: solution to the bending energy model.
Physical review. E, Statistical, nonlinear, and soft matter physics 2012;85(6 Pt 1):061910.
2012: Wu-Yang Zhang; Ying Jiang; Jeff Z Y Chen
Solution of the Onsager model for the structure of rigid rods confined on a spherical surface.
Physical review. E, Statistical, nonlinear, and soft matter physics 2012;85(6 Pt 1):061710.
2012: Wu-Yang Zhang; Ying Jiang; Jeff Z Y Chen
Onsager model for the structure of rigid rods confined on a spherical surface.
Physical review letters 2012;108(5):057801.
2011: Siqin Cao; Guanghong Wei; Jeff Z Y Chen
Transformation of an oblate-shaped vesicle induced by an adhering spherical particle.
Physical review. E, Statistical, nonlinear, and soft matter physics 2011;84(5 Pt 1):050901.
2011: Jeff Z Y Chen
Coil-bridge transition and Monte Carlo simulation of a stretched polymer.
Physical review. E, Statistical, nonlinear, and soft matter physics 2011;84(4 Pt 1):041809.
2011: Ying Jiang; Wu-Yang Zhang; Jeff Z Y Chen
Dependence of the disorder-lamellar stability boundary of a melt of asymmetric wormlike AB diblock copolymers on the chain rigidity.
Physical review. E, Statistical, nonlinear, and soft matter physics 2011;84(4 Pt 1):041803.
2010: Jeff Z Y Chen
Model of a polymer chain adsorbed to a soft membrane surface.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;82(6 Pt 1):060801.
2010: Mingge Deng; Ying Jiang; Haojun Liang; Jeff Z Y Chen
Adsorption of a wormlike polymer in a potential well near a hard wall: crossover between two scaling regimes.
The Journal of chemical physics 2010;133(3):034902.
2010: Jeff Z Y Chen; Sergey Mkrtchyan
Adhesion between a rigid cylindrical particle and a soft fluid membrane tube.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;81(4 Pt 1):041906.
2010: Sergey Mkrtchyan; Christopher Ing; Jeff Z Y Chen
Adhesion of cylindrical colloids to the surface of a membrane.
Physical review. E, Statistical, nonlinear, and soft matter physics 2010;81(1 Pt 1):011904.
2009: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Comparison of predicted native structures of Met-enkephalin based on various accessible-surface-area solvent models.
Journal of computational chemistry 2009;30(7):1051-8.
2009: Jeff Z Y Chen; Yuan Liu; H-J Liang
Structure of a tubular membrane confining spherical particles.
Physical review letters 2009;102(16):168103.
2008: Ting Cui; Jiandong Ding; Jeff Z Y Chen
Dynamics of a self-avoiding polymer chain in slit, tube, and cube confinements.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;78(6 Pt 1):061802.
2007: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Determination of structural transitions of atomic clusters from local and global bond orientational order parameters.
The Journal of chemical physics 2007;127(14):141101.
2007: Hideo Imamura; Jeff Z Y Chen
Minimum model for the alpha-helix-beta-hairpin transition in proteins.
Proteins 2007;67(2):459-68.
2007: Runqing Jiang; Rob B Barnett; James C L Chow; Jeff Z Y Chen
The use of spatial dose gradients and probability density function to evaluate the effect of internal organ motion for prostate IMRT treatment planning.
Physics in medicine and biology 2007;52(5):1469-84.
2007: Jeff Z Y Chen
Swollen-to-globular transition of a self-avoiding polymer confined in a soft tube.
Physical review letters 2007;98(8):088302.
2007: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Computational study of the Trp-cage miniprotein based on the ECEPP/3 force field.
Proteins 2007;66(2):436-43.
2006: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Conformational study of Met-enkephalin based on the ECEPP force fields.
Biophysical journal 2006;91(7):2399-404.
2006: Hideo Imamura; Jeff Z Y Chen
Dependence of folding dynamics and structural stability on the location of a hydrophobic pair in beta-hairpins.
Proteins 2006;63(3):555-70.
2006: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu
Monte Carlo basin paving: an improved global optimization method.
Physical review. E, Statistical, nonlinear, and soft matter physics 2006;73(1 Pt 2):015701.
2005: Jeff Z Y Chen; Heng-Kwong Tsao; Yu-Jane Sheng
Diffusion-controlled first contact of the ends of a polymer: crossover between two scaling regimes.
Physical review. E, Statistical, nonlinear, and soft matter physics 2005;72(3 Pt 1):031804.
2005: Lixin Zhan; Jeff Z Y Chen; Wing-Ki Liu; SK Lai
Asynchronous multicanonical basin hopping method and its application to cobalt nanoclusters.
The Journal of chemical physics 2005;122(24):244707.
2005: Raul Cruz Hidalgo; DE Sullivan; Jeff Z Y Chen
Smectic ordering of homogeneous semiflexible polymers.
Physical review. E, Statistical, nonlinear, and soft matter physics 2005;71(4 Pt 1):041804.
2004: Anirban Sain; Bae-Yeun Ha; Heng-Kwong Tsao; Jeff Z Y Chen
Chain persistency in single-stranded DNA.
Physical review. E, Statistical, nonlinear, and soft matter physics 2004;69(6 Pt 1):061913.
2004: Lixin Zhan; Bart Piwowar; Wing-Ki Liu; P J Hsu; SK Lai; Jeff Z Y Chen
Multicanonical basin hopping: a new global optimization method for complex systems.
The Journal of chemical physics 2004;120(12):5536-42.
2003: Jeff Z Y Chen; Alexander S Lemak; James R Lepock; Josh P Kemp
Minimal model for studying prion-like folding pathways.
Proteins 2003;51(2):283-8.
2003: Alexander S Lemak; James R Lepock; Jeff Z Y Chen
Molecular dynamics simulations of a protein model in uniform and elongational flows.
Proteins 2003;51(2):224-35.
2003: Alexander S Lemak; James R Lepock; Jeff Z Y Chen
Unfolding proteins in an external field: can we always observe the intermediate states?
Physical review. E, Statistical, nonlinear, and soft matter physics 2003;67(3 Pt 1):031910.
2002: Aleksander V Ermoshkin; Jeff Z Y Chen; Pik-Yin Lai
Adsorption of a random copolymer at a lipid bilayer membrane.
Physical review. E, Statistical, nonlinear, and soft matter physics 2002;66(5 Pt 1):051912.
2002: Jeff Z Y Chen
Unzipping double-stranded DNA with a force: numerical results.
Physical review. E, Statistical, nonlinear, and soft matter physics 2002;66(3 Pt 1):031912.
2002: Andrew F Wind; Josh P Kemp; Aleksander V Ermoshkin; Jeff Z Y Chen
Structural and folding properties of a lattice prion model.
Physical review. E, Statistical, nonlinear, and soft matter physics 2002;66(3 Pt 1):031909.
2001: Josh P Kemp; Jeff Z Y Chen
Helical structures in proteins.
Biomacromolecules 2001;2(2):389-401.