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Luonan Chen

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TOP 3
Zikai Wu; Yong Wang; Luonan Chen
Network-based drug repositioning.
J Wang; Luonan Chen; Q Huang; N Li; G Tan; J Zhou
Triggers of migraine and tension-type headache in China: a clinic-based survey.
Xianwen Ren; Yong Wang; Xiang-Sun Zhang; Luonan Chen; Qi Jin
ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions.

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All Publications

2013: Zikai Wu; Yong Wang; Luonan Chen
Network-based drug repositioning.
Molecular bioSystems 2013;9(6):1268-81.
2013: J Wang; Luonan Chen; Q Huang; N Li; G Tan; J Zhou
Triggers of migraine and tension-type headache in China: a clinic-based survey.
European journal of neurology : the official journal of the European Federation of Neurological Societies 2013;20(4):689-96.
2013: Xianwen Ren; Yong Wang; Xiang-Sun Zhang; Luonan Chen; Qi Jin
ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions.
Nucleic acids research 2013;41(4):e53.
2013: Ying Wang; Yong Wang; Derong Xu; Xiang-Sun Zhang; Runsheng Chen; Xiaowei Chen; Qiang Huang; Zhi-Ping Liu; Luonan Chen
De novo prediction of RNA-protein interactions from sequence information.
Molecular bioSystems 2013;9(1):133-42.
2013: Chenglei Sun; Luonan Chen; Zheng-Zheng Shi; Xiaobo Zhou; Xing-Ming Zhao
Prediction of S-glutathionylation sites based on protein sequences.
PloS one 2013;8(2):e55512.
2013: Jiguang Wang; Xiang-Sun Zhang; Si Zheng; Huarong Zhou; Yidan Sun; Luonan Chen
APG: an Active Protein-Gene network model to quantify regulatory signals in complex biological systems.
Scientific reports 2013;3():1097.
2013: Xiujun Zhang; Xing-Ming Zhao; Béatrice Duval; Jin-Kao Hao; Keqin Liu; Zhi-Ping Liu; Jean-Michel Richer; Luonan Chen
NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.
Bioinformatics (Oxford, England) 2013;29(1):106-13.
2012: Hailong Zhu; R Shyama Prasad Rao; Tao Zeng; Luonan Chen
Reconstructing dynamic gene regulatory networks from sample-based transcriptional data.
Nucleic acids research 2012;40(21):10657-67.
2012: Wei Song; Jiguang Wang; Luonan Chen; Naihe Jing; Ying Yang; Xiangsun Zhang; Jiarui Wu
Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis.
Journal of molecular cell biology 2012;4(4):197-206.
2012: Tao Zeng; Luonan Chen
Tracing dynamic biological processes during phase transition.
BMC systems biology 2012;6 Suppl 1():S12.
2012: Yong Wang; Xiang-Sun Zhang; Luonan Chen
Modelling biological systems from molecules to dynamical networks.
BMC systems biology 2012;6 Suppl 1():S1.
2012: Guanying Piao; Shigeru Saito; Yidan Sun; Yong Wang; Jiarui Wu; Huarong Zhou; Luonan Chen; Xiao Han; Zhi-Ping Liu; Katsuhisa Horimoto
A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats.
BMC systems biology 2012;6 Suppl 1():S2.
2012: Luonan Chen; Michael K Ng
Guest editorial: bioinformatics and computational systems biology.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2012;9(4):945-6.
2012: Zhi-Ping Liu; Luonan Chen
Proteome-wide prediction of protein-protein interactions from high-throughput data.
Protein & cell 2012;3(7):508-20.
2012: Luonan Chen; Jiarui Wu
Systems biology for complex diseases.
Journal of molecular cell biology 2012;4(3):125-6.
2012: Danning He; Masao Honda; Shuichi Kaneko; Zhi-Ping Liu; Luonan Chen
Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma.
Journal of molecular cell biology 2012;4(3):140-52.
2012: Songyot Nakariyakul; Zhi-Ping Liu; Luonan Chen
Detecting thermophilic proteins through selecting amino acid and dipeptide composition features.
Amino acids 2012;42(5):1947-53.
2012: Jiajun Zhang; Luonan Chen; Tianshou Zhou
Analytical distribution and tunability of noise in a model of promoter progress.
Biophysical journal 2012;102(6):1247-57.
2012: Lin Wang; Xiang-Sun Zhang; Zhi-Ping Liu; Luonan Chen
Prediction of hot spots in protein interfaces using a random forest model with hybrid features.
Protein engineering, design & selection : PEDS 2012;25(3):119-26.
2012: Xiaoping Liu; Zhi-Ping Liu; Xing-Ming Zhao; Luonan Chen
Identifying disease genes and module biomarkers by differential interactions.
Journal of the American Medical Informatics Association : JAMIA 2012;19(2):241-8.
2012: Rui Liu; Zhi-Ping Liu; Jiarui Wu; Luonan Chen; Meiyi Li; Kazuyuki Aihara
Identifying critical transitions and their leading biomolecular networks in complex diseases.
Scientific reports 2012;2():813.
2012: Zhenshu Wen; Jiarui Wu; Yiqing Yan; Zhengrong Liu; Zhi-Ping Liu; Guanying Piao; Luonan Chen
Identifying responsive modules by mathematical programming: an application to budding yeast cell cycle.
PloS one 2012;7(7):e41854.
2012: Hee Sook Lee; Ji-Hyun Lee; Jong-Jun Lee; Young Sun Oh; Kyoohyoung Rho; Claudiu T Supuran; Taejeong Bae; Luonan Chen; Alessio Innocenti; Yeongjun Jang; Dae Gyu Kim; Ji-Tea Kim; Sunghoon Kim
Rational drug repositioning guided by an integrated pharmacological network of protein, disease and drug.
BMC systems biology 2012;6():80.
2012: Ke-Qin Liu; Zhi-Ping Liu; Luonan Chen; Jin-Kao Hao; Xing-Ming Zhao
Identifying dysregulated pathways in cancers from pathway interaction networks.
BMC bioinformatics 2012;13():126.
2012: Zhi-Ping Liu; Yu-Qing Qiu; Stephen K W Tsui; Jiguang Wang; Xiang-Sun Zhang; Ross K K Leung; Luonan Chen
Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
BMC bioinformatics 2012;13 Suppl 7():S6.
2012: Luonan Chen; Meiyi Li; Rui Liu; Zhi-Ping Liu; Kazuyuki Aihara
Detecting early-warning signals for sudden deterioration of complex diseases by dynamical network biomarkers.
Scientific reports 2012;2():342.
2012: Xiujun Zhang; Xing-Ming Zhao; Yongwei Cao; Jin-Kao Hao; Kun He; Jingdong Liu; Zhi-Ping Liu; Le Lu; Luonan Chen
Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information.
Bioinformatics (Oxford, England) 2012;28(1):98-104.
2011: Ruiqi Wang; Luonan Chen; Kaihui Liu; Kazuyuki Aihara
Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling.
Bioinformatics (Oxford, England) 2011;27(22):3158-65.
2011: Achyut Sapkota; Xing-Ming Zhao; Yongwei Cao; Jingdong Liu; Xiaoping Liu; Zhi-Ping Liu; Luonan Chen
DIPOS: database of interacting proteins in Oryza sativa.
Molecular bioSystems 2011;7(9):2615-21.
2011: Jiguang Wang; Yong Wang; Ling-Yun Wu; Luonan Chen; Qiang Huang; Zhi-Ping Liu; Xiang-Sun Zhang
NOA: a novel Network Ontology Analysis method.
Nucleic acids research 2011;39(13):e87.
2011: Zhi-Ping Liu; Yong Wang; Xiang-Sun Zhang; Weiming Xia; Luonan Chen
Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients.
Molecular bioSystems 2011;7(5):1441-52.
2011: Yiqing Zheng; Y Liu; Q Wu; H Hong; H Zhou; J Chen; H Wang; W Xian; Jun Li; Zehuan Liu; Zhong Pei; Luonan Chen
Confirmation of LRRK2 S1647T variant as a risk factor for Parkinson's disease in southern China.
European journal of neurology : the official journal of the European Federation of Neurological Societies 2011;18(3):538-40.
2011: Huarong Zhou; Katsuhisa Horimoto; Zhi-Ping Liu; Guanying Piao; Shigeru Saito; Jiguang Wang; Luonan Chen
Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.
BMC systems biology 2011;5 Suppl 1():S16.
2011: Hong-Bo Lei; Ji-Feng Zhang; Luonan Chen
Multi-equilibrium property of metabolic networks: SSI module.
BMC systems biology 2011;5 Suppl 1():S15.
2011: Yong Wang; Xiang-Sun Zhang; Luonan Chen
Computational systems biology: integration of sequence, structure, network, and dynamics.
BMC systems biology 2011;5 Suppl 1():S1.
2011: Dengyu Liu; Xiao Chang; Zengrong Liu; Luonan Chen; Ruiqi Wang
Bistability and oscillations in gene regulation mediated by small noncoding RNAs.
PloS one 2011;6(3):e17029.
2010: Xing-Ming Zhao; Yixue Li; Ming Li; Luonan Chen
Advances in genome informatics.
Journal of bioinformatics and computational biology 2010;8 Suppl 1():v-viii.
2010: Zhi-Ping Liu; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Prediction of protein-RNA binding sites by a random forest method with combined features.
Bioinformatics (Oxford, England) 2010;26(13):1616-22.
2010: Lin Wang; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang; Luonan Chen
SANA: an algorithm for sequential and non-sequential protein structure alignment.
Amino acids 2010;39(2):417-25.
2010: Xing-Ming Zhao; Luonan Chen; Kazuyuki Aihara
A discriminative approach for identifying domain-domain interactions from protein-protein interactions.
Proteins 2010;78(5):1243-53.
2010: Xiaoping Liu; Wei-Hua Tang; Xing-Ming Zhao; Luonan Chen
A network approach to predict pathogenic genes for Fusarium graminearum.
PloS one 2010;5(10):.
2010: Zikai Wu; Xing-Ming Zhao; Luonan Chen
A systems biology approach to identify effective cocktail drugs.
BMC systems biology 2010;4 Suppl 2():S7.
2010: Chenglei Sun; Xing-Ming Zhao; Weihua Tang; Luonan Chen
FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.
BMC systems biology 2010;4 Suppl 2():S12.
2010: Zhi-Ping Liu; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.
BMC systems biology 2010;4 Suppl 2():S11.
2010: Yong Wang; Xiang-Sun Zhang; Luonan Chen
Optimization meets systems biology.
BMC systems biology 2010;4 Suppl 2():S1.
2010: Yu-Qing Qiu; Shihua Zhang; Xiang-Sun Zhang; Luonan Chen
Detecting disease associated modules and prioritizing active genes based on high throughput data.
BMC bioinformatics 2010;11():26.
2010: Zhao Song; Luonan Chen; Dong Xu
Bioinformatics methods for protein identification using Peptide mass fingerprinting.
Methods in molecular biology (Clifton, N.J.) 2010;604():7-22.
2009: Yong Wang; Ling-Yun Wu; Ji-Hong Zhang; Zhong-Wei Zhan; Xiang-Sun Zhang; Luonan Chen
Evaluating protein similarity from coarse structures.
IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM 2009;6(4):583-93.
2009: Xing-Ming Zhao; Xiao-Wei Zhang; Wei-Hua Tang; Luonan Chen
FPPI: Fusarium graminearum protein-protein interaction database.
Journal of proteome research 2009;8(10):4714-21.
2009: Jiguang Wang; Shihua Zhang; Yong Wang; Luonan Chen; Xiang-Sun Zhang
Disease-aging network reveals significant roles of aging genes in connecting genetic diseases.
PLoS computational biology 2009;5(9):e1000521.
2009: Yong Wang; Xiang-Sun Zhang; Luonan Chen
A network biology study on circadian rhythm by integrating various omics data.
Omics : a journal of integrative biology 2009;13(4):313-24.
2009: Yi Wang; Zhongjun Ma; Jianwei Shen; Zengrong Liu; Luonan Chen
Periodic oscillation in delayed gene networks with SUM regulatory logic and small perturbations.
Mathematical biosciences 2009;220(1):34-44.
2009: Zhao Song; Luonan Chen; Dong Xu
Confidence assessment for protein identification by using peptide-mass fingerprinting data.
Proteomics 2009;9(11):3090-9.
2009: Xing-Ming Zhao; Rui-Sheng Wang; Luonan Chen; Kazuyuki Aihara
Automatic modeling of signaling pathways by network flow model.
Journal of bioinformatics and computational biology 2009;7(2):309-22.
2009: Zikai Wu; Xingming Zhao; Luonan Chen
Identifying responsive functional modules from protein-protein interaction network.
Molecules and cells 2009;27(3):271-7.
2009: H Fan; Z Wang; Luonan Chen; Kazuyuki Aihara
Feedback mechanism in network dynamics with preferential flow.
Physical review. E, Statistical, nonlinear, and soft matter physics 2009;79(2 Pt 2):026107.
2009: Rui-Sheng Wang; Guangxu Jin; Xiang-Sun Zhang; Luonan Chen
Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli.
BMC bioinformatics 2009;10 Suppl 4():S6.
2008: Xing-Ming Zhao; Luonan Chen; Kazuyuki Aihara
Protein function prediction with high-throughput data.
Amino acids 2008;35(3):517-30.
2008: Zhi-Ping Liu; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Bridging protein local structures and protein functions.
Amino acids 2008;35(3):627-50.
2008: Tianshou Zhou; Jiajun Zhang; Zhanjiang Yuan; Luonan Chen
Synchronization of genetic oscillators.
Chaos (Woodbury, N.Y.) 2008;18(3):037126.
2008: Guangxu Jin; Xiaobo Zhou; Honghui Wang; Hong Zhao; Kemi Cui; Xiang-Sun Zhang; Luonan Chen; Stanley L Hazen; King Li; Stephen Wong
The knowledge-integrated network biomarkers discovery for major adverse cardiac events.
Journal of proteome research 2008;7(9):4013-21.
2008: Xing-Ming Zhao; Yong Wang; Luonan Chen; Kazuyuki Aihara
Protein domain annotation with integration of heterogeneous information sources.
Proteins 2008;72(1):461-73.
2008: Yong Xie; Luonan Chen; Yan-Mei Kang; Kazuyuki Aihara
Controlling the onset of Hopf bifurcation in the Hodgkin-Huxley model.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;77(6 Pt 1):061921.
2008: Chunguang Li; Luonan Chen; Kazuyuki Aihara
Impulsive control of stochastic systems with applications in chaos control, chaos synchronization, and neural networks.
Chaos (Woodbury, N.Y.) 2008;18(2):023132.
2008: Xing-Ming Zhao; Rui-Sheng Wang; Luonan Chen; Kazuyuki Aihara
Uncovering signal transduction networks from high-throughput data by integer linear programming.
Nucleic acids research 2008;36(9):e48.
2008: Zhenping Li; Shihua Zhang; Rui-Sheng Wang; Xiang-Sun Zhang; Luonan Chen
Quantitative function for community detection.
Physical review. E, Statistical, nonlinear, and soft matter physics 2008;77(3 Pt 2):036109.
2008: Xing-Ming Zhao; Xin Li; Luonan Chen; Kazuyuki Aihara
Protein classification with imbalanced data.
Proteins 2008;70(4):1125-32.
2008: Xing-Ming Zhao; Luonan Chen; Kazuyuki Aihara
Protein function prediction with the shortest path in functional linkage graph and boosting.
International journal of bioinformatics research and applications 2008;4(4):375-84.
2008: Xing-Ming Zhao; Yong Wang; Luonan Chen; Kazuyuki Aihara
Protein domain annotation with predicted domain-domain interaction networks.
Protein and peptide letters 2008;15(5):456-62.
2008: Zhi-Ping Liu; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Analysis of protein surface patterns by pocket similarity network.
Protein and peptide letters 2008;15(5):448-55.
2008: Xing-Ming Zhao; Yong Wang; Luonan Chen; Kazuyuki Aihara
Gene function prediction using labeled and unlabeled data.
BMC bioinformatics 2008;9():57.
2008: Shihua Zhang; Xiang-Sun Zhang; Luonan Chen
Biomolecular network querying: a promising approach in systems biology.
BMC systems biology 2008;2():5.
2007: Rui-Sheng Wang; Xiang-Sun Zhang; Luonan Chen
Inferring transcriptional interactions and regulator activities from experimental data.
Molecules and cells 2007;24(3):307-15.
2007: Rui-Sheng Wang; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Inferring transcriptional regulatory networks from high-throughput data.
Bioinformatics (Oxford, England) 2007;23(22):3056-64.
2007: Ruiqi Wang; Luonan Chen; Kazuyuki Aihara
Detection of cellular rhythms and global stability within interlocked feedback systems.
Mathematical biosciences 2007;209(1):171-89.
2007: Shihua Zhang; Guangxu Jin; Xiang-Sun Zhang; Luonan Chen
Discovering functions and revealing mechanisms at molecular level from biological networks.
Proteomics 2007;7(16):2856-69.
2007: Li Zhenping; Shihua Zhang; Yong Wang; Xiang-Sun Zhang; Luonan Chen
Alignment of molecular networks by integer quadratic programming.
Bioinformatics (Oxford, England) 2007;23(13):1631-9.
2007: Zhao Song; Luonan Chen; Ashwin Ganapathy; Xiu-Feng Wan; Laurent Brechenmacher; Nengbing Tao; David Emerich; Gary Stacey; Dong Xu
Development and assessment of scoring functions for protein identification using PMF data.
Electrophoresis 2007;28(5):864-70.
2007: Zhi-Ping Liu; Ling-Yun Wu; Yong Wang; Luonan Chen; Xiang-Sun Zhang
Predicting gene ontology functions from protein's regional surface structures.
BMC bioinformatics 2007;8():475.
2007: Yong Wang; Ling-Yun Wu; Luonan Chen; Xiang-Sun Zhang
Supervised classification of protein structures based on convex hull representation.
International journal of bioinformatics research and applications 2007;3(2):123-44.
2007: Guangxu Jin; Shihua Zhang; Xiang-Sun Zhang; Luonan Chen
Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast.
PloS one 2007;2(11):e1207.
2007: Rui-Sheng Wang; Yong Wang; Ling-Yun Wu; Xiang-Sun Zhang; Luonan Chen
Analysis on multi-domain cooperation for predicting protein-protein interactions.
BMC bioinformatics 2007;8():391.
2007: Chunguang Li; Luonan Chen; Kazuyuki Aihara
Stochastic synchronization of genetic oscillator networks.
BMC systems biology 2007;1():6.
2007: Zikai Wu; Enmin Feng; Yong Wang; Luonan Chen
Discrimination of outer membrane proteins by a new measure of information discrepancy.
Protein and peptide letters 2007;14(1):37-44.
2006: Yong Wang; Trupti Joshi; Xiang-Sun Zhang; Dong Xu; Luonan Chen
Inferring gene regulatory networks from multiple microarray datasets.
Bioinformatics (Oxford, England) 2006;22(19):2413-20.
2006: Ruiqi Wang; Luonan Chen; Kazuyuki Aihara
Construction of genetic oscillators with interlocked feedback networks.
Journal of theoretical biology 2006;242(2):454-63.
2006: Chunguang Li; Luonan Chen; Kazuyuki Aihara
Transient resetting: a novel mechanism for synchrony and its biological examples.
PLoS computational biology 2006;2(8):e103.
2006: Ruiqi Wang; Luonan Chen; Kazuyuki Aihara
Synchronizing a multicellular system by external input: an artificial control strategy.
Bioinformatics (Oxford, England) 2006;22(14):1775-81.
2006: Chunguang Li; Luonan Chen; Kazuyuki Aihara
Synchronization of coupled nonidentical genetic oscillators.
Physical biology 2006;3(1):37-44.
2006: Luonan Chen; Ling-Yun Wu; Yong Wang; Xiang-Sun Zhang
Inferring protein interactions from experimental data by association probabilistic method.
Proteins 2006;62(4):833-7.
2006: Zhao Song; Luonan Chen; Chao Zhang; Dong Xu
Design and implementation of probability-based scoring function for peptide mass fingerprinting protein identification.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2006;1():4556-9.
2006: Zhenping Li; Yong Wang; Shihua Zhang; Xiang-Sun Zhang; Luonan Chen
Alignment of protein interaction networks by integer quadratic programming.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2006;1():5527-30.
2006: Rui-Sheng Wang; Ling-Yun Wu; Xiang-Sun Zhang; Luonan Chen
A Markov chain model for haplotype assembly from SNP fragments.
Genome informatics. International Conference on Genome Informatics 2006;17(2):162-71.
2006: Luonan Chen; Ling-Yun Wu; Yong Wang; Shihua Zhang; Xiang-Sun Zhang
Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison.
BMC structural biology 2006;6():18.
2005: Tianshou Zhou; Luonan Chen; Kazuyuki Aihara
Molecular communication through stochastic synchronization induced by extracellular fluctuations.
Physical review letters 2005;95(17):178103.
2005: Zhenping Li; Wenfeng Zhou; Xiang-Sun Zhang; Luonan Chen
A parsimonious tree-grow method for haplotype inference.
Bioinformatics (Oxford, England) 2005;21(17):3475-81.
2005: Tianshou Zhou; Luonan Chen; Yun Tang; Xiangsun Zhang
Aligning multiple protein structures by deterministic annealing.
Journal of bioinformatics and computational biology 2005;3(4):837-60.
2005: Tianshou Zhou; Luonan Chen; Ruiqi Wang
Excitation functions of coupling.
Physical review. E, Statistical, nonlinear, and soft matter physics 2005;71(6 Pt 2):066211.
2005: Ruiqi Wang; Luonan Chen
Synchronizing genetic oscillators by signaling molecules.
Journal of biological rhythms 2005;20(3):257-69.
2005: Luonan Chen; Ruiqi Wang; Tianshou Zhou; Kazuyuki Aihara
Noise-induced cooperative behavior in a multicell system.
Bioinformatics (Oxford, England) 2005;21(11):2722-9.
2005: Xiang-Sun Zhang; Yong Wang; Zhong-Wei Zhan; Ling-Yun Wu; Luonan Chen
Exploring protein's optimal HP configurations by self-organizing mapping.
Journal of bioinformatics and computational biology 2005;3(2):385-400.
2005: Ruiqi Wang; Zhujun Jing; Luonan Chen
Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems.
Bulletin of mathematical biology 2005;67(2):339-67.
2005: Luonan Chen; Ling-Yun Wu; Ruiqi Wang; Yong Wang; Shihua Zhang; Xiang-Sun Zhang
Comparison of protein structures by multi-objective optimization.
Genome informatics. International Conference on Genome Informatics 2005;16(2):114-24.
2005: Zhenping Li; Xiangsun Zhang; Luonan Chen
Unique optimal foldings of proteins on a triangular lattice.
Applied bioinformatics 2005;4(2):105-16.
2005: Luonan Chen; Tianshou Zhou; Yun Tang
Protein structure alignment by deterministic annealing.
Bioinformatics (Oxford, England) 2005;21(1):51-62.
2004: Luonan Chen; Ruiqi Wang; Tetsuya J Kobayashi; Kazuyuki Aihara
Dynamics of gene regulatory networks with cell division cycle.
Physical review. E, Statistical, nonlinear, and soft matter physics 2004;70(1 Pt 1):011909.
2004: Ruiqi Wang; Tianshou Zhou; Luonan Chen
Synthetic gene oscillators by negative feedback networks.
Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference 2004;4():2877-80.
2004: Tianshou Zhou; Luonan Chen; Ruiqi Wang; Kazuyuki Aihara
Intercellular communications induced by random fluctuations.
Genome informatics. International Conference on Genome Informatics 2004;15(2):223-33.
2003: Tetsuya Kobayashi; Luonan Chen; Kazuyuki Aihara
Modeling genetic switches with positive feedback loops.
Journal of theoretical biology 2003;221(3):379-99.
2002: Tetsuya Kobayashi; Luonan Chen; Kazuyuki Aihara
Design of genetic switches with only positive feedback loops.
Proceedings / IEEE Computer Society Bioinformatics Conference. IEEE Computer Society Bioinformatics Conference 2002;1():151-62.