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Jeffrey Chen

This is a preview profile on BiomedExperts - the first literature-based scientific social network. It brings the right researchers together and allows them to collaborate online. Collexis and Dell provide the BiomedExperts network of +1.5 Million pre-calculated profiles free of charge to researchers worldwide.

Research Profile (preview)

Living Beings

Anatomy

Physiology

Genes & Molecular Sequences

Concepts & Ideas

Gene Expression Profiling

Chemicals & Drugs

Devices

Oligonucleotide Array Sequence Analysis

Phenomena

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Co-Publications
Name
10
Wang, Jianlin
9
Tian, Lu
6
Doerge, Rebecca
6
Lee, Hyeon-Se
5
Lee, Jinsuk
4
Osborn, Thomas
4
Chen, Meng
4
Stelly, David
4
Comai, Luca
3
Lawrence, Richard
3
Watson, Brian
3
Wei, Ning
3
Gao, Wenxiang
3
Kohel, Russell
3
Jiang, Hongmei

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Publications

TOP 3
Ha Misook; Lu Jie; Tian Lu; Ramachandran Vanitharani; Kasschau Kristin D; Chapman Elisabeth J; Carrington James C; Chen Xuemei; Wang Xiu-Jie; Chen Z Jeffrey
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.
Tseng Yan Yuan; Dupree Craig; Chen Z Jeffrey; Li Wen-Hsiung
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns.
Ha Misook; Kim Eun-Deok; Chen Z Jeffrey
Duplicate genes increase expression diversity in closely related species and allopolyploids.

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All Publications

2009: Ha Misook; Lu Jie; Tian Lu; Ramachandran Vanitharani; Kasschau Kristin D; Chapman Elisabeth J; Carrington James C; Chen Xuemei; Wang Xiu-Jie; Chen Z Jeffrey
Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(42):17835-40.
2009: Tseng Yan Yuan; Dupree Craig; Chen Z Jeffrey; Li Wen-Hsiung
SplitPocket: identification of protein functional surfaces and characterization of their spatial patterns.
Nucleic acids research 2009;37(Web Server issue):W384-9.
2009: Ha Misook; Kim Eun-Deok; Chen Z Jeffrey
Duplicate genes increase expression diversity in closely related species and allopolyploids.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(7):2295-300.
2009: Ni Zhongfu; Kim Eun-Deok; Ha Misook; Lackey Erika; Liu Jianxin; Zhang Yirong; Sun Qixin; Chen Z Jeffrey
Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids.
Nature 2009;457(7227):327-31.
2009: Gaeta Robert T; Yoo Suk-Young; Pires J C; Doerge R W; Chen Z Jeffrey; Osborn Thomas C
Analysis of gene expression in resynthesized Brassica napus Allopolyploids using arabidopsis 70mer oligo microarrays.
PloS one 2009;4(3):e4760.
2008: Ha Misook; Pang Mingxiong; Agarwal Vikram; Chen Z Jeffrey
Interspecies regulation of microRNAs and their targets.
Biochimica et biophysica acta 2008;1779(11):735-42.
2008: Chen Meng; Ha Misook; Lackey Erika; Wang Jianlin; Chen Z Jeffrey
RNAi of met1 reduces DNA methylation and induces genome-specific changes in gene expression and centromeric small RNA accumulation in Arabidopsis allopolyploids.
Genetics 2008;178(4):1845-58.
2007: Lee Jinsuk J; Woodward Andrew W; Chen Z Jeffrey
Gene expression changes and early events in cotton fibre development.
Annals of botany 2007;100(7):1391-401.
2007: Zhao Jianwei; Wang Jianlin; An Lingling; Doerge R W; Chen Z Jeffrey; Grau Craig R; Meng Jinling; Osborn Thomas C
Analysis of gene expression profiles in response to Sclerotinia sclerotiorum in Brassica napus.
Planta 2007;227(1):13-24.
2007: Chen Z Jeffrey; Tian Lu
Roles of dynamic and reversible histone acetylation in plant development and polyploidy.
Biochimica et biophysica acta 2007;1769(5-6):295-307.
2007: Ha Misook; Li Wen-Hsiung; Chen Z Jeffrey
External factors accelerate expression divergence between duplicate genes.
Trends in genetics : TIG 2007;23(4):162-6.
2007: Chen Z Jeffrey; Ha Misook; Soltis Douglas
Polyploidy: genome obesity and its consequences.
The New phytologist 2007;174(4):717-20.
2007: Udall Joshua A; Flagel Lex E; Cheung Foo; Woodward Andrew W; Hovav Ran; Rapp Ryan A; Swanson Jordan M; Lee Jinsuk J; Gingle Alan R; Nettleton Dan; Town Christopher D; Chen Z Jeffrey; Wendel Jonathan F
Spotted cotton oligonucleotide microarrays for gene expression analysis.
BMC genomics 2007;8():81.
2007: Chen Z Jeffrey
Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids.
Annual review of plant biology 2007;58():377-406.
2006: Tate Jennifer A; Ni Zhongfu; Scheen Anne-Cathrine; Koh Jin; Gilbert Candace A; Lefkowitz David; Chen Z Jeffrey; Soltis Pamela S; Soltis Douglas E
Evolution and expression of homeologous loci in Tragopogon miscellus (Asteraceae), a recent and reciprocally formed allopolyploid.
Genetics 2006;173(3):1599-611.
2006: Wang Jianlin; Tian Lu; Lee Hyeon-Se; Chen Z Jeffrey
Nonadditive regulation of FRI and FLC loci mediates flowering-time variation in Arabidopsis allopolyploids.
Genetics 2006;173(2):965-74.
2006: Fong Paulus M; Tian Lu; Chen Z Jeffrey
Arabidopsis thaliana histone deacetylase 1 (AtHD1) is localized in euchromatic regions and demonstrates histone deacetylase activity in vitro.
Cell research 2006;16(5):479-88.
2006: Wang Nian; Lu Shi-En; Wang Jianlin; Chen Z Jeffrey; Gross Dennis C
The expression of genes encoding lipodepsipeptide phytotoxins by Pseudomonas syringae pv. syringae is coordinated in response to plant signal molecules.
Molecular plant-microbe interactions : MPMI 2006;19(3):257-69.
2006: Chen Z Jeffrey; Ni Zhongfu
Mechanisms of genomic rearrangements and gene expression changes in plant polyploids.
BioEssays : news and reviews in molecular, cellular and developmental biology 2006;28(3):240-52.
2006: Gao Wenxiang; Chen Z Jeffrey; Yu John Z; Kohel Russell J; Womack James E; Stelly David M
Wide-cross whole-genome radiation hybrid mapping of the cotton (Gossypium barbadense L.) genome.
Molecular genetics and genomics : MGG 2006;275(2):105-13.
2006: Lee Jinsuk J; Hassan Osama S S; Gao Wenxilang; Wei Ning E; Kohel Russell J; Chen Xiao-Ya; Payton Paxton; Sze Sing-Hoi; Stelly David M; Chen Z Jeffrey
Developmental and gene expression analyses of a cotton naked seed mutant.
Planta 2006;223(3):418-32.
2006: Wang Jianlin; Tian Lu; Lee Hyeon-Se; Wei Ning E; Jiang Hongmei; Watson Brian; Madlung Andreas; Osborn Thomas C; Doerge R W; Comai Luca; Chen Z Jeffrey
Genomewide nonadditive gene regulation in Arabidopsis allotetraploids.
Genetics 2006;172(1):507-17.
2005: Lu Shi-En; Wang Nian; Wang Jianlin; Chen Z Jeffrey; Gross Dennis C
Oligonucleotide microarray analysis of the salA regulon controlling phytotoxin production by Pseudomonas syringae pv. syringae.
Molecular plant-microbe interactions : MPMI 2005;18(4):324-33.
2005: Johnston J Spencer; Pepper Alan E; Hall Anne E; Chen Z Jeffrey; Hodnett George; Drabek Janice; Lopez Rebecca; Price H James
Evolution of genome size in Brassicaceae.
Annals of botany 2005;95(1):229-35.
2005: Tian Lu; Fong M Paulus; Wang Jiyuan J; Wei Ning E; Jiang Hongmei; Doerge R W; Chen Z Jeffrey
Reversible histone acetylation and deacetylation mediate genome-wide, promoter-dependent and locus-specific changes in gene expression during plant development.
Genetics 2005;169(1):337-45.
2005: Wang Jianlin; Lee Jinsuk J; Tian Lu; Lee Hyeon-Se; Chen Meng; Rao Sheetal; Wei Edward N; Doerge R W; Comai Luca; Chen Z Jeffrey
Methods for genome-wide analysis of gene expression changes in polyploids.
Methods in enzymology 2005;395():570-96.
2005: Pikaard Craig S; Preuss Sasha; Earley Keith; Lawrence Richard J; Lewis Michelle S; Chen Z Jeffrey
Detecting differential expression of parental or progenitor alleles in genetic hybrids and allopolyploids.
Methods in enzymology 2005;395():554-69.
2004: Wang Jianlin; Tian Lu; Madlung Andreas; Lee Hyeon-Se; Chen Meng; Lee Jinsuk J; Watson Brian; Kagochi Trevor; Comai Luca; Chen Z Jeffrey
Stochastic and epigenetic changes of gene expression in Arabidopsis polyploids.
Genetics 2004;167(4):1961-73.
2004: Gao Wenxiang; Chen Z Jeffrey; Yu John Z; Raska Dwaine; Kohel Russell J; Womack James E; Stelly David M
Wide-cross whole-genome radiation hybrid mapping of cotton (Gossypium hirsutum L.).
Genetics 2004;167(3):1317-29.
2004: Lawrence Richard J; Earley Keith; Pontes Olga; Silva Manuela; Chen Z Jeffrey; Neves Nuno; Viegas Wanda; Pikaard Craig S
A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance.
Molecular cell 2004;13(4):599-609.
2004: Lee Hyeon-Se; Wang Jianlin; Tian Lu; Jiang Hongmei; Black Michael A; Madlung Andreas; Watson Brian; Lukens Lewis; Pires J Chris; Wang Jiyuan J; Comai Luca; Osborn Thomas C; Doerge R W; Chen Z Jeffrey
Sensitivity of 70-mer oligonucleotides and cDNAs for microarray analysis of gene expression in Arabidopsis and its related species.
Plant biotechnology journal 2004;2(1):45-57.
2004: Mei M; Syed N H; Gao W; Thaxton P M; Smith C W; Stelly D M; Chen Z J
Genetic mapping and QTL analysis of fiber-related traits in cotton ( Gossypium).
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2004;108(2):280-91.
2003: Pontes Olga; Lawrence Richard J; Neves Nuno; Silva Manuela; Lee Jae-Hyeok; Chen Z Jeffrey; Viegas Wanda; Pikaard Craig S
Natural variation in nucleolar dominance reveals the relationship between nucleolus organizer chromatin topology and rRNA gene transcription in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(20):11418-23.
2003: Tian Lu; Wang Jianlin; Fong M Paulus; Chen Meng; Cao Hongbin; Gelvin Stanton B; Chen Z Jeffrey
Genetic control of developmental changes induced by disruption of Arabidopsis histone deacetylase 1 (AtHD1) expression.
Genetics 2003;165(1):399-409.
2001: Lee H S; Chen Z J
Protein-coding genes are epigenetically regulated in Arabidopsis polyploids.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(12):6753-8.
2001: Tian L; Chen Z J
Blocking histone deacetylation in Arabidopsis induces pleiotropic effects on plant gene regulation and development.
Proceedings of the National Academy of Sciences of the United States of America 2001;98(1):200-5.

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