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Jan-Fang Cheng

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K Dimitri Kits; Martin Klotz; Aurélie Lajus; M L Land; Alla Lapidus; S Lucas; Claudine Médigue; J Colin Murrell; Huub J M Op den Camp; S Pitluck; Françoise Bringel; D Bruce; Jan-Fang Cheng; A Copeland; Alan A DiSpirito; Lynne Goodwin; Loren Hauser; Mike S M Jetten; Marina G Kalyuzhnaya; Stéphane Vuilleumier; Tanja Woyke; Ahmet Zeytun; Lisa Y Stein
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.
James G Elkins; Lynne A Goodwin; Scott D Hamilton-Brehm; Cliff S Han; James Han; Loren Hauser; Natalia N Ivanova; Nikos C Kyrpides; Miriam L Land; Alla Lapidus; Susan Lucas; Natalia Mikhailova; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Tanja Woyke; David Bruce; Jan-Fang Cheng; Karen W Davenport; John C Detter; Robert W Cottingham
Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T.
Stefan Spring; Alfons J M Stams; Roxanne Tapia; Michael Visser; Tanja Woyke; Rizlan Bernier-Latmani; Jan-Fang Cheng; Alex Copeland; John C Detter; Markus Göker; Lynne A Goodwin; Cliff Han; Loren Hauser; Natalia Ivanova; Jan Kuever; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Frank Larimer; Megan Lu; Susan Lucas; Gerard Muyzer; Sofiya N Parshina; Inês A C Pereira; Sam Pitluck; Caroline M Plugge; Manfred Rohde; Peter J Schaap; Hans-Peter Klenk
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)).

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All Publications

2013: K Dimitri Kits; Martin Klotz; Aurélie Lajus; M L Land; Alla Lapidus; S Lucas; Claudine Médigue; J Colin Murrell; Huub J M Op den Camp; S Pitluck; Françoise Bringel; D Bruce; Jan-Fang Cheng; A Copeland; Alan A DiSpirito; Lynne Goodwin; Loren Hauser; Mike S M Jetten; Marina G Kalyuzhnaya; Stéphane Vuilleumier; Tanja Woyke; Ahmet Zeytun; Lisa Y Stein
Genome Sequence of the Obligate Gammaproteobacterial Methanotroph Methylomicrobium album Strain BG8.
Genome announcements 2013;1(2):e0017013.
2013: James G Elkins; Lynne A Goodwin; Scott D Hamilton-Brehm; Cliff S Han; James Han; Loren Hauser; Natalia N Ivanova; Nikos C Kyrpides; Miriam L Land; Alla Lapidus; Susan Lucas; Natalia Mikhailova; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Tanja Woyke; David Bruce; Jan-Fang Cheng; Karen W Davenport; John C Detter; Robert W Cottingham
Complete Genome Sequence of the Hyperthermophilic Sulfate-Reducing Bacterium Thermodesulfobacterium geofontis OPF15T.
Genome announcements 2013;1(2):e0016213.
2012: Stefan Spring; Alfons J M Stams; Roxanne Tapia; Michael Visser; Tanja Woyke; Rizlan Bernier-Latmani; Jan-Fang Cheng; Alex Copeland; John C Detter; Markus Göker; Lynne A Goodwin; Cliff Han; Loren Hauser; Natalia Ivanova; Jan Kuever; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Frank Larimer; Megan Lu; Susan Lucas; Gerard Muyzer; Sofiya N Parshina; Inês A C Pereira; Sam Pitluck; Caroline M Plugge; Manfred Rohde; Peter J Schaap; Hans-Peter Klenk
Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL(T)).
Standards in genomic sciences 2012;7(2):304-19.
2012: Susan Lucas; Natalia Mikhailova; Kenneth M Noll; Phil Oger; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Hazuki Teshima; Pauline Vannier; Tanja Woyke; Douglas H Bartlett; Jan-Fang Cheng; John C Detter; Lynne A Goodwin; Cliff Han; James Han; Loren Hauser; Natalia Ivanova; Nikos Kyrpides; Miriam Land; Alla Lapidus; Mohamed Jebbar
Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.
Journal of bacteriology 2012;194(21):5974-5.
2012: Saraswoti Neupane; Galina Ovchinnikova; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Natalia Ivanova; Hans-Peter Klenk; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Susan Lucas; Sadhna Alström; David Bruce; Jan-Fang Cheng; John C Detter; Roger D Finlay; Lynne Goodwin; Cliff Han; James Han; Loren Hauser; Brittany Held; Nils Högberg
Complete genome sequence of the plant-associated Serratia plymuthica strain AS13.
Standards in genomic sciences 2012;7(1):22-30.
2012: Dwi Susanti; Tanja Woyke; Anna A Perevalova; Lin Peters; Sam Pitluck; Jason R Rodriguez; Iain Anderson; Haruyuki Atomi; Elizaveta A Bonch-Osmolovskaya; Patricia P Chan; Jan-Fang Cheng; Lynne Goodwin; Venkat Gopalan; James Han; Loren Hauser; Eric F Johnson; Nikos Kyrpides; Miriam L Land; Alla Lapidus; Todd M Lowe; Susan Lucas; Konstantinos Mavrommatis; Biswarup Mukhopadhyay
Complete genome sequence of Desulfurococcus fermentans, a hyperthermophilic cellulolytic crenarchaeon isolated from a freshwater hot spring in Kamchatka, Russia.
Journal of bacteriology 2012;194(20):5703-4.
2012: David A Mead; Galina Ovchinnikova; Sam Pitluck; Thomas Schoenfeld; Roxanne Tapia; Tanja Woyke; Xiaojing Zhang; David Bruce; Catherine Brumm; Yun-Juan Chang; Jan-Fang Cheng; Olga Chertkov; Alex Copeland; John C Detter; Lynne A Goodwin; Cliff S Han; Loren J Hauser; Rebecca Hochstein; Natalia N Ivanova; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Susan Lucas; Phillip Brumm
Complete Genome Sequence of Paenibacillus strain Y4.12MC10, a Novel Paenibacillus lautus strain Isolated from Obsidian Hot Spring in Yellowstone National Park.
Standards in genomic sciences 2012;6(3):381-400.
2012: Saraswoti Neupane; Galina Ovchinnikova; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Natalia Ivanova; Hans-Peter Klenk; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Susan Lucas; Sadhna Alström; David Bruce; Jan-Fang Cheng; Olga Chertkov; John C Detter; Roger D Finlay; Lynne Goodwin; Cliff Han; James Han; Loren Hauser; Nils Högberg
Complete genome sequence of Serratia plymuthica strain AS12.
Standards in genomic sciences 2012;6(2):165-73.
2012: Saraswoti Neupane; Galina Ovchinnikova; Ioanna Pagani; Lin Peters; Sam Pitluck; Roxanne Tapia; Tanja Woyke; Sadhna Alström; David Bruce; Jan-Fang Cheng; John C Detter; Anne Fiebig; Lynne Goodwin; Cliff Han; James Han; Loren Hauser; Nils Högberg; Natalia Ivanova; Hans-Peter Klenk; Nikos C Kyrpides; Miriam Land; Alla Lapidus; Megan Lu; Susan Lucas; Roger D Finlay
Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9.
Standards in genomic sciences 2012;6(1):54-62.
2012: Iain Anderson; Jan-Fang Cheng; Lynne Goodwin; Cliff Han; James Han; Hans-Peter Klenk; Nikos Kyrpides; Miriam Land; Alla Lapidus; Susan Lucas; Natalia Mikhailova; Ioanna Pagani; Amrita Pati; Lin Peters; Sam Pitluck; Manfred Rohde; Roxanne Tapia; Hazuki Teshima; Brian J Tindall; Tanja Woyke; Natalia Ivanova
Complete genome sequence of Halopiger xanaduensis type strain (SH-6(T)).
Standards in genomic sciences 2012;6(1):31-42.
2012: Karen D Crow; Christopher D Smith; Günter P Wagner; Jan-Fang Cheng; Chris T Amemiya
An independent genome duplication inferred from Hox paralogs in the American paddlefish--a representative basal ray-finned fish and important comparative reference.
Genome biology and evolution 2012;4(9):937-53.
2012: Ze Peng; Len A Pennacchio; Tao Zhang; Zhiying Zhao; Jan-Fang Cheng; Alicia Clum; Alex C Copeland; Jeff L Froula; Nandita Nath; Feng Chen
Generation of long insert pairs using a Cre-LoxP Inverse PCR approach.
PloS one 2012;7(1):e29437.
2011: Rich Boden; Jan-Fang Cheng; Michael Cunliffe; Lynne Goodwin; Cliff Han; James Han; Loren Hauser; Natalia Ivanova; Mike S.M. Jetten; K Dimitri Kits; Martin Klotz; Nikos Kyrpides; Miriam L Land; Alla Lapidus; Susan Lucas; Natalia Mikhailova; Hélène Moussard; Ioanna Pagani; Lin Peters; Sam Pitluck; Julie Scanlan; Lisa Stein; Roxanne Tapia; Hazuki Teshima; Stéphane Vuilleumier; Tanja Woyke; J Colin Murrell
Complete genome sequence of the aerobic marine methanotroph Methylomonas methanica MC09.
Journal of bacteriology 2011;193(24):7001-2.
2011: Mette M Svenning; Stéphane Vuilleumier; Ingvild Wartiainen; Françoise Bringel; David Bruce; Jan-Fang Cheng; Lynne Goodwin; Cliff S Han; James Han; Loren Hauser; Brittany Held; Anne Grethe Hestnes; Natalia Ivanova; Marina G Kalyuzhnaya; Martin Klotz; Aurélie Lajus; Miriam L Land; Alla Lapidus; Susan Lucas; Claudine Médigue; Matt Nolan; Sam Pitluck; Anja Spang; Lisa Y Stein; Tanja Woyke
Genome sequence of the Arctic methanotroph Methylobacter tundripaludum SV96.
Journal of bacteriology 2011;193(22):6418-9.
2011: Loren J Hauser; Kimberly L Keller; Miriam L Land; Alla L Lapidus; Frank Larimer; Monica Lin; Susan Lucas; Matt Nolan; Anthony V Palumbo; Samuel Pitluck; Morgan N Price; Barbara J Rapp-Giles; Roxanne Tapia; Steven D Brown; David C Bruce; Jan-Fang Cheng; Alex Copeland; John C Detter; Lynne A Goodwin; Cliff S Han; Judy D Wall
Complete genome sequence and updated annotation of Desulfovibrio alaskensis G20.
Journal of bacteriology 2011;193(16):4268-9.
2011: Lawrence Feinberg; Justine Foden; Trisha Barrett; Karen Walston Davenport; David Bruce; Chris Detter; Roxanne Tapia; Cliff Han; Alla Lapidus; Susan Lucas; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Ivanova; Natalia Mikhailova; Miriam Land; Loren Hauser; D Aaron Argyros; Lynne Goodwin; David Hogsett; Nicky Caiazza
Complete genome sequence of the cellulolytic thermophile Clostridium thermocellum DSM1313.
Journal of bacteriology 2011;193(11):2906-7.
2011: Tina T Hu; Pedro Pattyn; Erica G Bakker; Jun Cao; Jan-Fang Cheng; Richard M Clark; Noah Fahlgren; Jeffrey A Fawcett; Jane Grimwood; Heidrun Gundlach; Georg Haberer; Jesse D Hollister; Stephan Ossowski; Robert P Ottilar; Asaf A Salamov; Korbinian Schneeberger; Manuel Spannagl; Xi Wang; Liang Yang; Mikhail E Nasrallah; Joy Bergelson; James C Carrington; Brandon S Gaut; Jeremy Schmutz; Klaus F X Mayer; Yves Van de Peer; Igor V Grigoriev; Magnus Nordborg; Detlef Weigel; Ya-Long Guo
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change.
Nature genetics 2011;43(5):476-81.
2011: Lisa Y Stein; Françoise Bringel; Alan A DiSpirito; Sukkyun Han; Mike S.M. Jetten; Marina G Kalyuzhnaya; K Dimitri Kits; Martin G Klotz; Huub J M Op den Camp; Jeremy D Semrau; Stéphane Vuilleumier; David C Bruce; Jan-Fang Cheng; Karen W Davenport; Lynne Goodwin; Shunsheng Han; Loren Hauser; Aurélie Lajus; Miriam L Land; Alla Lapidus; Susan Lucas; Claudine Médigue; Sam Pitluck; Tanja Woyke
Genome sequence of the methanotrophic alphaproteobacterium Methylocystis sp. strain Rockwell (ATCC 49242).
Journal of bacteriology 2011;193(10):2668-9.
2011: Steven D Brown; Cynthia C Gilmour; Amy M Kucken; Judy D Wall; Dwayne A Elias; Craig C Brandt; Mircea Podar; Olga Chertkov; Brittany Held; David C Bruce; John C Detter; Roxanne Tapia; Cliff S Han; Lynne A Goodwin; Jan-Fang Cheng; Samuel Pitluck; Tanja Woyke; Natalia Mikhailova; Natalia N Ivanova; James Han; Susan Lucas; Alla Lapidus; Miriam L Land; Loren Hauser; Anthony V Palumbo
Genome sequence of the mercury-methylating strain Desulfovibrio desulfuricans ND132.
Journal of bacteriology 2011;193(8):2078-9.
2011: Sara E Blumer-Schuette; Inci Ozdemir; Dhaval Mistry; Susan Lucas; Alla Lapidus; Jan-Fang Cheng; Lynne A Goodwin; Samuel Pitluck; Miriam L Land; Loren J Hauser; Tanja Woyke; Natalia Mikhailova; Amrita Pati; Nikos Kyrpides; Natalia Ivanova; John C Detter; Karen Walston-Davenport; Shunsheng Han; Michael W W Adams; Robert M Kelly
Complete genome sequences for the anaerobic, extremely thermophilic plant biomass-degrading bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus.
Journal of bacteriology 2011;193(6):1483-4.
2011: Tanja Woyke; Scott Clingenpeel; Janey Lee; Rex Malmstrom; Christian Rinke; Alexander Sczyrba; Ramunas Stepanauskas; Damon Tighe; Jan-Fang Cheng
Decontamination of MDA reagents for single cell whole genome amplification.
PloS one 2011;6(10):e26161.
2011: Marco Galardini; Lynne Goodwin; Cliff Han; Loren Hauser; Natalia Ivanova; Miriam Land; Alla Lapidus; Susan Lucas; Alessio Mengoni; Natalia Mikhailova; Stefano Mocali; Francesco Pini; Samuel Pitluck; Roxanne Tapia; Hazuki Teshima; Tanja Woyke; Matteo Brilli; David Bruce; Jan-Fang Cheng; Hajnalka Daligault; Chris Detter; Antonella Fioravanti; Marco Bazzicalupo; Emanuele G Biondi
Exploring the symbiotic pangenome of the nitrogen-fixing bacterium Sinorhizobium meliloti.
BMC genomics 2011;12():235.
2010: Tanja Woyke; Damon Tighe; Konstantinos Mavromatis; Alicia Clum; Alex Copeland; Wendy Schackwitz; Alla Lapidus; Dongying Wu; John P McCutcheon; Bradon R McDonald; Nancy A Moran; James Bristow; Jan-Fang Cheng
One bacterial cell, one complete genome.
PloS one 2010;5(4):e10314.
2009: Zhen Zhang; Deanne Alpert; Richard Francis; Bishwanath Chatterjee; Qing Yu; Terry Tansey; Steven L Sabol; Cheng Cui; Yongli Bai; Maxim Koriabine; Yuko Yoshinaga; Jan-Fang Cheng; Feng Chen; Joel Martin; Wendy Schackwitz; Teresa M Gunn; Kenneth L Kramer; Pieter J De Jong; Len A Pennacchio; Cecilia W Lo
Massively parallel sequencing identifies the gene Megf8 with ENU-induced mutation causing heterotaxy.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(9):3219-24.
2009: Alla Lapidus; Rüdiger Pukall; Kurt Labuttii; Alex Copeland; Tijana Glavina Del Rio; Matt Nolan; Feng Chen; Susan Lucas; Hope Tice; Jan-Fang Cheng; David Bruce; Lynne Goodwin; Sam Pitluck; Manfred Rohde; Markus Göker; Amrita Pati; Natalia Ivanova; Konstantinos Mavrommatis; Amy Chen; Krishna Palaniappan; Patrik D'haeseleer; Patrick Chain; Jim Bristow; Jonathan Eisen; Victor Markowitz; Philip Hugenholtz; Nikos Kyrpides; Hans-Peter Klenk
Complete genome sequence of Brachybacterium faecium type strain (Schefferle 6-10).
Standards in genomic sciences 2009;1(1):3-11.
2009: Tanja Woyke; Gary Xie; Alex Copeland; José M González; Cliff Han; Hajnalka Kiss; Jimmy Saw; Pavel Senin; Chi Yang; Sourav Chatterji; Jan-Fang Cheng; Jonathan Eisen; Michael E Sieracki; Ramunas Stepanauskas
Assembling the marine metagenome, one cell at a time.
PloS one 2009;4(4):e5299.
2008: Dana C Crawford; Ze Peng; Jan-Fang Cheng; Dario Boffelli; Magdalena Ahearn; Dan Nguyen; Tristan Shaffer; Qian Yi; Robert Livingston; Mark J Rieder; Deborah A Nickerson
LPA and PLG sequence variation and kringle IV-2 copy number in two populations.
Human heredity 2008;66(4):199-209.
2008: Benjamin J Raphael; Stanislav Volik; Peng Yu; Chunxiao Wu; Guiqing Huang; Elena Linardopoulou; Barbara J Trask; Frederic Waldman; Joseph F Costello; Kenneth J Pienta; Gordon B Mills; Krystyna Bajsarowicz; Yasuko Kobayashi; Shivaranjani Sridharan; Pamela L Paris; Quanzhou Tao; Sarah J Aerni; Raymond P Brown; Ali Bashir; Joe Gray; Jan-Fang Cheng; Pieter de Jong; Mikhail Nefedov; Thomas Ried; Hesed Padilla-Nash; Colin C Collins
A sequence-based survey of the complex structural organization of tumor genomes.
Genome biology 2008;9(3):R59.
2007: Wade T Nottingham; Andrew Jarratt; Matthew Burgess; Caroline L Speck; Jan-Fang Cheng; Shyam Prabhakar; Eddy M Rubin; Pik-Shan Li; Jacqueline A Sloane-Stanley; John Kong-A-San; Marella F T R de Bruijn
Runx1-mediated hematopoietic stem-cell emergence is controlled by a Gata/Ets/SCL-regulated enhancer.
Blood 2007;110(13):4188-97.
2007: Robert D Ward; Shannon W Davis; Minchul Cho; Constance Esposito; Robert H Lyons Jr; Jan-Fang Cheng; Edward M Rubin; Simon J Rhodes; Lori T Raetzman; Timothy P L Smith; Sally A Camper
Comparative genomics reveals functional transcriptional control sequences in the Prop1 gene.
Mammalian genome : official journal of the International Mammalian Genome Society 2007;18(6-7):521-37.
2007: Jan-Fang Cheng; James Priest; Len A Pennacchio
Comparative genomics: a tool to functionally annotate human DNA.
Methods in molecular biology (Clifton, N.J.) 2007;366():229-51.
2007: Qian-fei Wang; Shyam Prabhakar; Sumita Chanan; Jan-Fang Cheng; Edward M Rubin; Dario Boffelli
Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons.
Genome biology 2007;8(1):R1.
2006: Jianbin Peng; Wenji Dong; Ying Chen; Rong Mo; Jan-Fang Cheng; Chi-Chung Hui; Narla Mohandas; Cheng-Han Huang
Dusty protein kinases: primary structure, gene evolution, tissue specific expression and unique features of the catalytic domain.
Biochimica et biophysica acta 2006;1759(11-12):562-72.
2006: Tetyana Nosenko; Kristy L Lidie; Frances M Van Dolah; Erika Lindquist; Jan-Fang Cheng; Debashish Bhattacharya
Chimeric plastid proteome in the Florida "red tide" dinoflagellate Karenia brevis.
Molecular biology and evolution 2006;23(11):2026-38.
2006: Marco De Gobbi; Vip Viprakasit; Jim R Hughes; Chris Fisher; Veronica Buckle; Helena Ayyub; Richard J Gibbons; Douglas Vernimmen; Yuko Yoshinaga; Pieter de Jong; Jan-Fang Cheng; Edward M Rubin; William G Wood; Don Bowden; Douglas R Higgs
A regulatory SNP causes a human genetic disease by creating a new transcriptional promoter.
Science (New York, N.Y.) 2006;312(5777):1215-7.
2006: Stanislav Volik; Benjamin J Raphael; Guiqing Huang; Michael R Stratton; Graham Bignel; John Murnane; John H Brebner; Krystyna Bajsarowicz; Pamela L Paris; Quanzhou Tao; David Kowbel; Anna Lapuk; Dmitry A Shagin; Irina A Shagina; Joe Gray; Jan-Fang Cheng; Pieter J de Jong; Pavel A Pevzner; Colin Collins
Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Genome research 2006;16(3):394-404.
2006: Steven J B Cooper; David Wheeler; Alison De Leo; Jan-Fang Cheng; Robert A B Holland; Jennifer A Marshall Graves; Rory M Hope
The mammalian alphaD-globin gene lineage and a new model for the molecular evolution of alpha-globin gene clusters at the stem of the mammalian radiation.
Molecular phylogenetics and evolution 2006;38(2):439-48.
2006: Jennifer R Weidman; Dana C Dolinoy; Kristin A Maloney; Jan-Fang Cheng; Randy L Jirtle
Imprinting of opossum Igf2r in the absence of differential methylation and air.
Epigenetics : official journal of the DNA Methylation Society 2006;1(1):49-54.
2006: Qian-fei Wang; Shyam Prabhakar; Qianben Wang; Alan M Moses; Sumita Chanan; Myles Brown; Michael B Eisen; Jan-Fang Cheng; Edward M Rubin; Dario Boffelli
Primate-specific evolution of an LDLR enhancer.
Genome biology 2006;7(8):R68.
2005: Jim R Hughes; Jan-Fang Cheng; Nicki Ventress; Shyam Prabhakar; Kevin Clark; Eduardo Anguita; Marco De Gobbi; Pieter de Jong; Eddy Rubin; Douglas R Higgs
Annotation of cis-regulatory elements by identification, subclassification, and functional assessment of multispecies conserved sequences.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(28):9830-5.
2005: Liang-Hao Ding; Masato Shingyoji; Fanqing Chen; Jeng-Jong Hwang; Sandeep Burma; Clarissa Lee; Jan-Fang Cheng; David J Chen
Gene expression profiles of normal human fibroblasts after exposure to ionizing radiation: a comparative study of low and high doses.
Radiation research 2005;164(1):17-26.
2005: Shin-ichi Horike; Shutao Cai; Masaru Miyano; Jan-Fang Cheng; Terumi Kohwi-Shigematsu
Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome.
Nature genetics 2005;37(1):31-40.
2004: Julie A Kerns; J Newton; Tom G Berryere; Edward M Rubin; Jan-Fang Cheng; Sheila M Schmutz; Gregory S Barsh
Characterization of the dog Agouti gene and a nonagoutimutation in German Shepherd Dogs.
Mammalian genome : official journal of the International Mammalian Genome Society 2004;15(10):798-808.
2004: Yanjing Xiao; Austin Hughes; Junko Ando; Yoichi Matsuda; Jan-Fang Cheng; Donald Skinner-Noble; Guolong Zhang
A genome-wide screen identifies a single beta-defensin gene cluster in the chicken: implications for the origin and evolution of mammalian defensins.
BMC genomics 2004;5(1):56.
2004: Qian-fei Wang; Xin Liu; Jeff O'Connell; Ze Peng; Ronald M Krauss; David L Rainwater; John VandeBerg; Edward M Rubin; Jan-Fang Cheng; Len A Pennacchio
Haplotypes in the APOA1-C3-A4-A5 gene cluster affect plasma lipids in both humans and baboons.
Human molecular genetics 2004;13(10):1049-56.
2004: Dario Boffelli; Jan-Fang Cheng; Edward M Rubin
Convergent evolution in primates and an insectivore.
Genomics 2004;83(1):19-23.
2003: Jan-Fang Cheng; Len A Pennacchio
Comparative and functional analysis of cardiovascular-related genes.
Pharmacogenomics 2003;4(5):571-82.
2003: Hsin-hsin Kao; Ming-shi Chang; Jan-Fang Cheng; Jin-ding Huang
Genomic structure, gene expression, and promoter analysis of human multidrug resistance-associated protein 7.
Journal of biomedical science 2003;10(1):98-110.
2002: Jacqueline Boultwood; Carrie Fidler; Amanda J Strickson; Fiona Watkins; Susana Gama; Lyndal Kearney; Sabrina Tosi; Arek Kasprzyk; Jan-Fang Cheng; Rina J Jaju; james wainscoat
Narrowing and genomic annotation of the commonly deleted region of the 5q- syndrome.
Blood 2002;99(12):4638-41.
2001: Kelly A Frazer; J B Sheehan; Renee P Stokowski; Xiyin Chen; R Hosseini; Jan-Fang Cheng; Steve Fodor; David R Cox; Nila Patil
Evolutionarily conserved sequences on human chromosome 21.
Genome research 2001;11(10):1651-9.
2001: Rina J Jaju; Carrie Fidler; Oskar A Haas; Amanda J Strickson; Fiona Watkins; K Clark; Nicholas C P Cross; Jan-Fang Cheng; P D Aplan; Lyndal Kearney; Jacqueline Boultwood; james wainscoat
A novel gene, NSD1, is fused to NUP98 in the t(5;11)(q35;p15.5) in de novo childhood acute myeloid leukemia.
Blood 2001;98(4):1264-7.
2001: L B Cavelier; Y Qiu; John K Bielicki; Veena Afzal; Jan-Fang Cheng; Edward M Rubin
Regulation and activity of the human ABCA1 gene in transgenic mice.
The Journal of biological chemistry 2001;276(21):18046-51.
2001: Y Qiu; L Cavelier; S Chiu; X Yang; E Rubin; Jan-Fang Cheng
Human and mouse ABCA1 comparative sequencing and transgenesis studies revealing novel regulatory sequences.
Genomics 2001;73(1):66-76.
2000: Z Liu; Y Chen; Rong Mo; C c Hui; Jan-Fang Cheng; N Mohandas; Cheng-Han Huang
Characterization of human RhCG and mouse Rhcg as novel nonerythroid Rh glycoprotein homologues predominantly expressed in kidney and testis.
The Journal of biological chemistry 2000;275(33):25641-51.
2000: Y Zhu; M C Jong; Kelly A Frazer; E Gong; Ronald M Krauss; Jan-Fang Cheng; Dario Boffelli; Edward M Rubin
Genomic interval engineering of mice identifies a novel modulator of triglyceride production.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(3):1137-42.
2000: Jacqueline Boultwood; Amanda J Strickson; Ethylin Jabs; Jan-Fang Cheng; Carrie Fidler; james wainscoat
Physical mapping of the human ATX1 homologue (HAH1) to the critical region of the 5q- syndrome within 5q32, and immediately adjacent to the SPARC gene.
Human genetics 2000;106(1):127-9.
1997: Kelly A Frazer; Y Ueda; Y Zhu; V R Gifford; M R Garofalo; N Mohandas; C H Martin; M J Palazzolo; Jan-Fang Cheng; Edward M Rubin
Computational and biological analysis of 680 kb of DNA sequence from the human 5q31 cytokine gene cluster region.
Genome research 1997;7(5):495-512.
1997: Desmond J Smith; M E Stevens; S P Sudanagunta; R T Bronson; M Makhinson; Ayako M Watabe; Thomas J O'Dell; Jingly Fung; Heinz-Ulrich G Weier; Jan-Fang Cheng; Edward M Rubin
Functional screening of 2 Mb of human chromosome 21q22.2 in transgenic mice implicates minibrain in learning defects associated with Down syndrome.
Nature genetics 1997;16(1):28-36.
1996: G H Jossart; B O'Brien; Jan-Fang Cheng; Q Tong; Sissy M Jhiang; Quan-Yang Duh; Orlo H Clark; Heinz-Ulrich G Weier
A novel multicolor hybridization scheme applied to localization of a transcribed sequence (D10S170/H4) and deletion mapping in the thyroid cancer cell line TPC-1.
Cytogenetics and cell genetics 1996;75(4):254-7.
1995: Heinz-Ulrich G Weier; M Wang; J C Mullikin; Y Zhu; Jan-Fang Cheng; K M Greulich; A Bensimon; Joe Gray
Quantitative DNA fiber mapping.
Human molecular genetics 1995;4(10):1903-10.
1995: Desmond J Smith; Y Zhu; J Zhang; Jan-Fang Cheng; Edward M Rubin
Construction of a panel of transgenic mice containing a contiguous 2-Mb set of YAC/P1 clones from human chromosome 21q22.2.
Genomics 1995;27(3):425-34.
1994: Jan-Fang Cheng; V Boyartchuk; Y Zhu
Isolation and mapping of human chromosome 21 cDNA: progress in constructing a chromosome 21 expression map.
Genomics 1994;23(1):75-84.
1994: Jan-Fang Cheng; Y Zhu
Reverse transcription-polymerase chain reaction detection of transcribed sequences on human chromosome 21.
Genomics 1994;20(2):184-90.
1991: Jan-Fang Cheng; C L Smith; C R Cantor
Structural and transcriptional analysis of a human subtelomeric repeat.
Nucleic acids research 1991;19(1):149-54.
1990: Jan-Fang Cheng; C L Smith
YAC cloning of telomeres.
Genetic analysis, techniques and applications 1990;7(5):119-25.