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Naiqian Cheng

Research Profile

Procedures

Anatomy

Capsid

Chemicals & Drugs

Concepts & Ideas

Physiology

Activities & Behaviors

Image Processing, Computer-Assisted

Living Beings

Genes & Molecular Sequences

Amino Acid Sequences

Phenomena

Dimerization

Co-author Network

Publications

TOP 3
Weimin Wu; Norman R Watts; Paul T Wingfield; Zhaochun Chen; Naiqian Cheng; Patrizia Farci; Robert H Purcell; Stephen J Stahl; Alasdair C Steven
Specificity of an anti-capsid antibody associated with Hepatitis B Virus-related acute liver failure.
Naoko Mizuno; Jobin Varkey; Naiqian Cheng; Balachandra G Hegde; Natalie C Kegulian; Ralf Langen; Alasdair C Steven
Remodeling of lipid vesicles into cylindrical micelles by α-synuclein in an extended α-helical conformation.
Julie Thomas; Susan Weintraub; Dennis C Winkler; Weimin Wu; Naiqian Cheng; Alasdair C Steven; Lindsay W Black
Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ.

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All Publications

2013: Weimin Wu; Norman R Watts; Paul T Wingfield; Zhaochun Chen; Naiqian Cheng; Patrizia Farci; Robert H Purcell; Stephen J Stahl; Alasdair C Steven
Specificity of an anti-capsid antibody associated with Hepatitis B Virus-related acute liver failure.
Journal of structural biology 2013;181(1):53-60.
2012: Naoko Mizuno; Jobin Varkey; Naiqian Cheng; Balachandra G Hegde; Natalie C Kegulian; Ralf Langen; Alasdair C Steven
Remodeling of lipid vesicles into cylindrical micelles by α-synuclein in an extended α-helical conformation.
The Journal of biological chemistry 2012;287(35):29301-11.
2012: Julie Thomas; Susan Weintraub; Dennis C Winkler; Weimin Wu; Naiqian Cheng; Alasdair C Steven; Lindsay W Black
Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ.
Molecular microbiology 2012;84(2):324-39.
2012: Giovanni Cardone; Naiqian Cheng; William W Newcomb; Benes L Trus; Paul T Wingfield; Jay C Brown; Alasdair C Steven
The UL36 tegument protein of herpes simplex virus 1 has a composite binding site at the capsid vertices.
Journal of virology 2012;86(8):4058-64.
2012: Weimin Wu; Julie Thomas; Lindsay W Black; Naiqian Cheng; Alasdair C Steven
Bubblegrams reveal the inner body of bacteriophage φKZ.
Science (New York, N.Y.) 2012;335(6065):182.
2012: Giovanni Cardone; Naiqian Cheng; J Bernard Heymann; Benes Trus; Alasdair C Steven
Procapsid assembly, maturation, nuclear exit: dynamic steps in the production of infectious herpesvirions.
Advances in experimental medicine and biology 2012;726():423-39.
2012: Eaazhisai Kandiah; T Jake Liang; Stephen J Stahl; Giovanni Cardone; Naiqian Cheng; Theo Heller; Norman R Watts; Paul T Wingfield; Alasdair C Steven
Cryo-EM study of Hepatitis B virus core antigen capsids decorated with antibodies from a human patient.
Journal of structural biology 2012;177(1):145-51.
2011: Daniel Nemecek; Jian Qiao; Alasdair C Steven; Naiqian Cheng; Leonard Mindich; J Bernard Heymann
Stepwise expansion of the bacteriophage ϕ6 procapsid: possible packaging intermediates.
Journal of molecular biology 2011;414(2):260-71.
2011: Jun Lin; Alasdair C Steven; Naiqian Cheng; Marie Chow; David J Filman; James M Hogle; David M Belnap
An externalized polypeptide partitions between two distinct sites on genome-released poliovirus particles.
Journal of virology 2011;85(19):9974-83.
2011: Norman R Watts; James F Conway; Naiqian Cheng; Stephen J Stahl; Alasdair C Steven; Paul T Wingfield
Role of the propeptide in controlling conformation and assembly state of hepatitis B virus e-antigen.
Journal of molecular biology 2011;409(2):202-13.
2011: Ulrich Baxa; Paul W Keller; Naiqian Cheng; Joseph S Wall; Alasdair C Steven
In Sup35p filaments (the [PSI+] prion), the globular C-terminal domains are widely offset from the amyloid fibril backbone.
Molecular microbiology 2011;79(2):523-32.
2009: Robert L Duda; Philip D Ross; Naiqian Cheng; Brian A Firek; Roger W Hendrix; James F Conway; Alasdair C Steven
Structure and energetics of encapsidated DNA in bacteriophage HK97 studied by scanning calorimetry and cryo-electron microscopy.
Journal of molecular biology 2009;391(2):471-83.
2009: Giovanni Cardone; John Purdy; Naiqian Cheng; Rebecca C Craven; Alasdair C Steven
Visualization of a missing link in retrovirus capsid assembly.
Nature 2009;457(7230):694-8.
2008: Norman R Watts; Giovanni Cardone; Joe G Vethanayagam; Naiqian Cheng; Catharina Hultgren; Stephen J Stahl; Alasdair C Steven; Matti Sällberg; Paul T Wingfield
Non-canonical binding of an antibody resembling a naïve B cell receptor immunoglobulin to hepatitis B virus capsids.
Journal of molecular biology 2008;379(5):1119-29.
2008: Christopher B Buck; Naiqian Cheng; Cynthia D Thompson; Douglas Lowy; Alasdair C Steven; John T Schiller; Benes Trus
Arrangement of L2 within the papillomavirus capsid.
Journal of virology 2008;82(11):5190-7.
2008: Anindito Sen; J Bernard Heymann; Naiqian Cheng; Jian Qiao; Leonard Mindich; Alasdair C Steven
Initial location of the RNA-dependent RNA polymerase in the bacteriophage Phi6 procapsid determined by cryo-electron microscopy.
The Journal of biological chemistry 2008;283(18):12227-31.
2007: Benes Trus; William W Newcomb; Naiqian Cheng; Giovanni Cardone; Lyuben Marekov; Fred Homa; Jay C Brown; Alasdair C Steven
Allosteric signaling and a nuclear exit strategy: binding of UL25/UL17 heterodimers to DNA-Filled HSV-1 capsids.
Molecular cell 2007;26(4):479-89.
2007: Giovanni Cardone; Dennis C Winkler; Benes Trus; Naiqian Cheng; John Edward Heuser; William W Newcomb; Jay C Brown; Alasdair C Steven
Visualization of the herpes simplex virus portal in situ by cryo-electron tomography.
Virology 2007;361(2):426-34.
2007: James F Conway; Naiqian Cheng; Philip D Ross; Roger W Hendrix; Robert L Duda; Alasdair C Steven
A thermally induced phase transition in a viral capsid transforms the hexamers, leaving the pentamers unchanged.
Journal of structural biology 2007;158(2):224-32.
2006: Philip D Ross; James F Conway; Naiqian Cheng; Lindsay Dierkes; Brian A Firek; Roger W Hendrix; Alasdair C Steven; Robert L Duda
A free energy cascade with locks drives assembly and maturation of bacteriophage HK97 capsid.
Journal of molecular biology 2006;364(3):512-25.
2006: Lu Gan; Jeffrey A Speir; James F Conway; Gabriel C Lander; Naiqian Cheng; Brian A Firek; Roger W Hendrix; Robert L Duda; Lars Liljas; John E Johnson
Capsid conformational sampling in HK97 maturation visualized by X-ray crystallography and cryo-EM.
Structure (London, England : 1993) 2006;14(11):1655-65.
2006: William R Wikoff; James F Conway; Jinghua Tang; Kelly K Lee; Lu Gan; Naiqian Cheng; Robert L Duda; Roger W Hendrix; Alasdair C Steven; John E Johnson
Time-resolved molecular dynamics of bacteriophage HK97 capsid maturation interpreted by electron cryo-microscopy and X-ray crystallography.
Journal of structural biology 2006;153(3):300-6.
2006: Audray Harris; David M Belnap; Norman R Watts; James F Conway; Naiqian Cheng; Stephen J Stahl; J G Vethanayagam; Paul T Wingfield; Alasdair C Steven
Epitope diversity of hepatitis B virus capsids: quasi-equivalent variations in spike epitopes and binding of different antibodies to the same epitope.
Journal of molecular biology 2006;355(3):562-76.
2005: Doryen Bubeck; David J Filman; Naiqian Cheng; Alasdair C Steven; James M Hogle; David M Belnap
The structure of the poliovirus 135S cell entry intermediate at 10-angstrom resolution reveals the location of an externalized polypeptide that binds to membranes.
Journal of virology 2005;79(12):7745-55.
2005: Ulrich Baxa; Naiqian Cheng; Dennis C Winkler; Thang K Chiu; David Davies; Deepak Sharma; Hideyo Inouye; Daniel A Kirschner; Reed Wickner; Alasdair C Steven
Filaments of the Ure2p prion protein have a cross-beta core structure.
Journal of structural biology 2005;150(2):170-9.
2005: Yiyong Li; James F Conway; Naiqian Cheng; Alasdair C Steven; Roger W Hendrix; Robert L Duda
Control of virus assembly: HK97 "Whiffleball" mutant capsids without pentons.
Journal of molecular biology 2005;348(1):167-82.
2005: Philip D Ross; Naiqian Cheng; James F Conway; Brian A Firek; Roger W Hendrix; Robert L Duda; Alasdair C Steven
Crosslinking renders bacteriophage HK97 capsid maturation irreversible and effects an essential stabilization.
The EMBO journal 2005;24(7):1352-63.
2005: Alasdair C Steven; J Bernard Heymann; Naiqian Cheng; Benes Trus; James F Conway
Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.
Current opinion in structural biology 2005;15(2):227-36.
2005: J Bernard Heymann; Kenji Iwasaki; Yang-In Yim; Naiqian Cheng; David M Belnap; Lois E Greene; Evan Eisenberg; Alasdair C Steven
Visualization of the binding of Hsc70 ATPase to clathrin baskets: implications for an uncoating mechanism.
The Journal of biological chemistry 2005;280(8):7156-61.
2005: Alasdair C Steven; James F Conway; Naiqian Cheng; Norman R Watts; David M Belnap; Audray Harris; Stephen J Stahl; Paul T Wingfield
Structure, assembly, and antigenicity of hepatitis B virus capsid proteins.
Advances in virus research 2005;64():125-64.
2005: Andrew J Davison; Benes Trus; Naiqian Cheng; Alasdair C Steven; Moira S Watson; Charles Cunningham; Rose-Marie Le Deuff; Tristan Renault
A novel class of herpesvirus with bivalve hosts.
The Journal of general virology 2005;86(Pt 1):41-53.
2004: Benes Trus; Naiqian Cheng; William W Newcomb; Fred Homa; Jay C Brown; Alasdair C Steven
Structure and polymorphism of the UL6 portal protein of herpes simplex virus type 1.
Journal of virology 2004;78(22):12668-71.
2004: Takashi Ishikawa; Naiqian Cheng; Xiong Liu; Edward D Korn; Alasdair C Steven
Subdomain organization of the Acanthamoeba myosin IC tail from cryo-electron microscopy.
Proceedings of the National Academy of Sciences of the United States of America 2004;101(33):12189-94.
2004: Lu Gan; James F Conway; Brian A Firek; Naiqian Cheng; Roger W Hendrix; Alasdair C Steven; John E Johnson; Robert L Duda
Control of crosslinking by quaternary structure changes during bacteriophage HK97 maturation.
Molecular cell 2004;14(5):559-69.
2003: Shixing Tang; Tsutomu Murakami; Naiqian Cheng; Alasdair C Steven; Eric O Freed; Judith G Levin
Human immunodeficiency virus type 1 N-terminal capsid mutants containing cores with abnormally high levels of capsid protein and virtually no reverse transcriptase.
Journal of virology 2003;77(23):12592-602.
2003: Ulrich Baxa; Kimberly Taylor; Joseph S Wall; Martha N Simon; Naiqian Cheng; Reed Wickner; Alasdair C Steven
Architecture of Ure2p prion filaments: the N-terminal domains form a central core fiber.
The Journal of biological chemistry 2003;278(44):43717-27.
2003: David M Belnap; Norman R Watts; James F Conway; Naiqian Cheng; Stephen J Stahl; Paul T Wingfield; Alasdair C Steven
Diversity of core antigen epitopes of hepatitis B virus.
Proceedings of the National Academy of Sciences of the United States of America 2003;100(19):10884-9.
2003: James F Conway; Norman R Watts; David M Belnap; Naiqian Cheng; Stephen J Stahl; Paul T Wingfield; Alasdair C Steven
Characterization of a conformational epitope on hepatitis B virus core antigen and quasiequivalent variations in antibody binding.
Journal of virology 2003;77(11):6466-73.
2003: J Bernard Heymann; Naiqian Cheng; William W Newcomb; Benes Trus; Jay C Brown; Alasdair C Steven
Dynamics of herpes simplex virus capsid maturation visualized by time-lapse cryo-electron microscopy.
Nature structural biology 2003;10(5):334-41.
2003: Mario E Cerritelli; Benes Trus; Charles S Smith; Naiqian Cheng; James F Conway; Alasdair C Steven
A second symmetry mismatch at the portal vertex of bacteriophage T7: 8-fold symmetry in the procapsid core.
Journal of molecular biology 2003;327(1):1-6.
2003: Mario E Cerritelli; James F Conway; Naiqian Cheng; Benes Trus; Alasdair C Steven
Molecular mechanisms in bacteriophage T7 procapsid assembly, maturation, and DNA containment.
Advances in protein chemistry 2003;64():301-23.
2002: Norman R Watts; Naiqian Cheng; Wendy West; Alasdair C Steven; Dan L Sackett
The cryptophycin-tubulin ring structure indicates two points of curvature in the tubulin dimer.
Biochemistry 2002;41(42):12662-9.
2002: Naiqian Cheng; Benes Trus; David M Belnap; William W Newcomb; Jay C Brown; Alasdair C Steven
Handedness of the herpes simplex virus capsid and procapsid.
Journal of virology 2002;76(15):7855-9.
2002: Norman R Watts; James F Conway; Naiqian Cheng; Stephen J Stahl; David M Belnap; Alasdair C Steven; Paul T Wingfield
The morphogenic linker peptide of HBV capsid protein forms a mobile array on the interior surface.
The EMBO journal 2002;21(5):876-84.
2002: Norman R Watts; Leslie N Jones; Naiqian Cheng; Joseph S Wall; David A D Parry; Alasdair C Steven
Cryo-electron microscopy of trichocyte (hard alpha-keratin) intermediate filaments reveals a low-density core.
Journal of structural biology 2002;137(1-2):109-18.
2001: Andrey V Kajava; Naiqian Cheng; R Cleaver; Martin Kessel; Martha N Simon; Eve Willery; Françoise Jacob-Dubuisson; Camille Locht; Alasdair C Steven
Beta-helix model for the filamentous haemagglutinin adhesin of Bordetella pertussis and related bacterial secretory proteins.
Molecular microbiology 2001;42(2):279-92.
2001: James F Conway; William R Wikoff; Naiqian Cheng; Robert L Duda; Roger W Hendrix; John E Johnson; Alasdair C Steven
Virus maturation involving large subunit rotations and local refolding.
Science (New York, N.Y.) 2001;292(5517):744-8.
2001: Benes Trus; J Bernard Heymann; K Nealon; Naiqian Cheng; William W Newcomb; Jay C Brown; Dean H Kedes; Alasdair C Steven
Capsid structure of Kaposi's sarcoma-associated herpesvirus, a gammaherpesvirus, compared to those of an alphaherpesvirus, herpes simplex virus type 1, and a betaherpesvirus, cytomegalovirus.
Journal of virology 2001;75(6):2879-90.
2000: K Iwasaki; Benes Trus; Paul T Wingfield; Naiqian Cheng; G Campusano; V B Rao; Alasdair C Steven
Molecular architecture of bacteriophage T4 capsid: vertex structure and bimodal binding of the stabilizing accessory protein, Soc.
Virology 2000;271(2):321-33.
2000: Ekaterina G Frank; Naiqian Cheng; C C Do; Mario E Cerritelli; I Bruck; M F Goodman; E H Egelman; Roger Woodgate; Alasdair C Steven
Visualization of two binding sites for the Escherichia coli UmuD'(2)C complex (DNA pol V) on RecA-ssDNA filaments.
Journal of molecular biology 2000;297(3):585-97.
2000: F Yang; P Forrer; Z Dauter; James F Conway; Naiqian Cheng; Mario E Cerritelli; Alasdair C Steven; A Plückthun; Alexander Wlodawer
Novel fold and capsid-binding properties of the lambda-phage display platform protein gpD.
Nature structural biology 2000;7(3):230-7.
2000: William W Newcomb; Benes Trus; Naiqian Cheng; Alasdair C Steven; AK Sheaffer; Daniel J Tenney; Sandra K Weller; Jay C Brown
Isolation of herpes simplex virus procapsids from cells infected with a protease-deficient mutant virus.
Journal of virology 2000;74(4):1663-73.
2000: David M Belnap; David J Filman; Benes Trus; Naiqian Cheng; frank booy; James F Conway; S Curry; CN Hiremath; SK Tsang; Alasdair C Steven; James M Hogle
Molecular tectonic model of virus structural transitions: the putative cell entry states of poliovirus.
Journal of virology 2000;74(3):1342-54.
2000: R Lata; James F Conway; Naiqian Cheng; Robert L Duda; Roger W Hendrix; William R Wikoff; John E Johnson; Hiro Tsuruta; Alasdair C Steven
Maturation dynamics of a viral capsid: visualization of transitional intermediate states.
Cell 2000;100(2):253-63.
2000: David M Belnap; Brian M McDermott; David J Filman; Naiqian Cheng; Benes Trus; Harmon J Zuccola; Vincent Racaniello; James M Hogle; Alasdair C Steven
Three-dimensional structure of poliovirus receptor bound to poliovirus.
Proceedings of the National Academy of Sciences of the United States of America 2000;97(1):73-8.
1999: Naiqian Cheng; James F Conway; Norman R Watts; James F Hainfeld; V Joshi; Richard D Powell; Stephen J Stahl; P E Wingfield; Alasdair C Steven
Tetrairidium, a four-atom cluster, is readily visible as a density label in three-dimensional cryo-EM maps of proteins at 10-25 A resolution.
Journal of structural biology 1999;127(2):169-76.
1999: William W Newcomb; Fred Homa; Darrell R Thomsen; Benes Trus; Naiqian Cheng; Alasdair C Steven; frank booy; Jay C Brown
Assembly of the herpes simplex virus procapsid from purified components and identification of small complexes containing the major capsid and scaffolding proteins.
Journal of virology 1999;73(5):4239-50.
1999: Benes Trus; D GIBSON; Naiqian Cheng; Alasdair C Steven
Capsid structure of simian cytomegalovirus from cryoelectron microscopy: evidence for tegument attachment sites.
Journal of virology 1999;73(3):2181-92.
1999: K L Taylor; Naiqian Cheng; R W Williams; Alasdair C Steven; Reed Wickner
Prion domain initiation of amyloid formation in vitro from native Ure2p.
Science (New York, N.Y.) 1999;283(5406):1339-43.
1998: James F Conway; Naiqian Cheng; Adam Zlotnick; Stephen J Stahl; Paul T Wingfield; Alasdair C Steven
Localization of the N terminus of hepatitis B virus capsid protein by peptide-based difference mapping from cryoelectron microscopy.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(25):14622-7.
1998: James F Conway; Naiqian Cheng; Adam Zlotnick; Stephen J Stahl; Paul T Wingfield; David M Belnap; U Kanngiesser; M Noah; Alasdair C Steven
Hepatitis B virus capsid: localization of the putative immunodominant loop (residues 78 to 83) on the capsid surface, and implications for the distinction between c and e-antigens.
Journal of molecular biology 1998;279(5):1111-21.
1998: KA Miroshnikov; EI Marusich; Mario E Cerritelli; Naiqian Cheng; C Hyde; Alasdair C Steven; Vadim V Mesyanzhinov
Engineering trimeric fibrous proteins based on bacteriophage T4 adhesins.
Protein engineering 1998;11(4):329-32.
1998: Norman R Watts; M Misra; Paul T Wingfield; Stephen J Stahl; Naiqian Cheng; Benes Trus; Alasdair C Steven; R W Williams
Three-dimensional structure of HIV-1 Rev protein filaments.
Journal of structural biology 1998;121(1):41-52.
1997: Mario E Cerritelli; Naiqian Cheng; A H Rosenberg; C E McPherson; frank booy; Alasdair C Steven
Encapsidated conformation of bacteriophage T7 DNA.
Cell 1997;91(2):271-80.
1997: Adam Zlotnick; Naiqian Cheng; Stephen J Stahl; James F Conway; Alasdair C Steven; Paul T Wingfield
Localization of the C terminus of the assembly domain of hepatitis B virus capsid protein: implications for morphogenesis and organization of encapsidated RNA.
Proceedings of the National Academy of Sciences of the United States of America 1997;94(18):9556-61.
1997: Alasdair C Steven; Benes Trus; frank booy; Naiqian Cheng; Adam Zlotnick; Jose Caston; James F Conway
The making and breaking of symmetry in virus capsid assembly: glimpses of capsid biology from cryoelectron microscopy.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 1997;11(10):733-42.
1997: James F Conway; Naiqian Cheng; Adam Zlotnick; Paul T Wingfield; Stephen J Stahl; Alasdair C Steven
Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.
Nature 1997;386(6620):91-4.
1996: Adam Zlotnick; Naiqian Cheng; James F Conway; frank booy; Alasdair C Steven; Stephen J Stahl; Paul T Wingfield
Dimorphism of hepatitis B virus capsids is strongly influenced by the C-terminus of the capsid protein.
Biochemistry 1996;35(23):7412-21.
1995: Benes Trus; Fred Homa; frank booy; William W Newcomb; Darrell R Thomsen; Naiqian Cheng; Jay C Brown; Alasdair C Steven
Herpes simplex virus capsids assembled in insect cells infected with recombinant baculoviruses: structural authenticity and localization of VP26.
Journal of virology 1995;69(11):7362-6.
1995: James F Conway; Robert L Duda; Naiqian Cheng; Roger W Hendrix; Alasdair C Steven
Proteolytic and conformational control of virus capsid maturation: the bacteriophage HK97 system.
Journal of molecular biology 1995;253(1):86-99.
1995: Eva Kocsis; Mario E Cerritelli; Benes Trus; Naiqian Cheng; Alasdair C Steven
Improved methods for determination of rotational symmetries in macromolecules.
Ultramicroscopy 1995;60(2):219-28.
1994: R Holland Cheng; Jose Caston; G J Wang; F Gu; Thomas J Smith; Timothy S Baker; R F Bozarth; Benes Trus; Naiqian Cheng; Reed Wickner
Fungal virus capsids, cytoplasmic compartments for the replication of double-stranded RNA, formed as icosahedral shells of asymmetric Gag dimers.
Journal of molecular biology 1994;244(3):255-8.
1992: Reinhard Kirnbauer; frank booy; Naiqian Cheng; Douglas Lowy; John T Schiller
Papillomavirus L1 major capsid protein self-assembles into virus-like particles that are highly immunogenic.
Proceedings of the National Academy of Sciences of the United States of America 1992;89(24):12180-4.