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Foo Cheung
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Research Profile (preview)
Genes & Molecular Sequences
Chemicals & Drugs
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19
Town, Christopher
8
Quackenbush, John
6
Sultana, Razvan
6
Lee, Yuandan
6
Pertea, Geo
5
Karamycheva, Svetlana
4
Antonescu, Valentin
4
Havey, Michael
4
Yuan, Qiaoping
4
Tsai, Jennifer
3
Parvizi, Babak
3
Zheng, Li
3
Whitelaw, Catherine
3
Trick, Martin
3
Young, Nevin
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Geonetwork of Foo Cheung (preview)
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All Publications
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2009: Cheung Foo; Trick Martin; Drou Nizar; Lim Yong Pyo; Park Jee-Young; Kwon Soo-Jin; Kim Jin-A; Scott Rod; Pires J Chris; Paterson Andrew H; Town Chris; Bancroft Ian
Comparative analysis between homoeologous genome segments of Brassica napus and its progenitor species reveals extensive sequence-level divergence.
The Plant cell 2009;21(7):1912-28.
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2009: Trick Martin; Cheung Foo; Drou Nizar; Fraser Fiona; Lobenhofer Edward K; Hurban Patrick; Magusin Andreas; Town Christopher D; Bancroft Ian
A newly-developed community microarray resource for transcriptome profiling in Brassica species enables the confirmation of Brassica-specific expressed sequences.
BMC plant biology 2009;9():50.
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2008: Jakse Jernej; Meyer Jenelle D F; Suzuki Go; McCallum John; Cheung Foo; Town Christopher D; Havey Michael J
Pilot sequencing of onion genomic DNA reveals fragments of transposable elements, low gene densities, and significant gene enrichment after methyl filtration.
Molecular genetics and genomics : MGG 2008;280(4):287-92.
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2008: Cheung Foo; Win Joe; Lang Jillian M; Hamilton John; Vuong Hue; Leach Jan E; Kamoun Sophien; André Lévesque C; Tisserat Ned; Buell C Robin
Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches.
BMC genomics 2008;9():542.
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2008: Kakar Klementina; Wandrey Maren; Czechowski Tomasz; Gaertner Tanja; Scheible Wolf-Rüdiger; Stitt Mark; Torres-Jerez Ivone; Xiao Yongli; Redman Julia C; Wu Hank C; Cheung Foo; Town Christopher D; Udvardi Michael K
A community resource for high-throughput quantitative RT-PCR analysis of transcription factor gene expression in Medicago truncatula.
Plant methods 2008;4():18.
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2008: Mian M A Rouf; Zhang Yan; Wang Zeng-Yu; Zhang Ji-Yi; Cheng Xiaofei; Chen Lei; Chekhovskiy Konstantin; Dai Xinbin; Mao Chunhong; Cheung Foo; Zhao Xuechun; He Ji; Scott Angela D; Town Christopher D; May Gregory D
Analysis of tall fescue ESTs representing different abiotic stresses, tissue types and developmental stages.
BMC plant biology 2008;8():27.
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2008: Timko Michael P; Rushton Paul J; Laudeman Thomas W; Bokowiec Marta T; Chipumuro Edmond; Cheung Foo; Town Christopher D; Chen Xianfeng
Sequencing and analysis of the gene-rich space of cowpea.
BMC genomics 2008;9():103.
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2008: Lescot Magali; Piffanelli Pietro; Ciampi Ana Y; Ruiz Manuel; Blanc Guillaume; Leebens-Mack Jim; da Silva Felipe R; Santos Candice M R; D'Hont Angélique; Garsmeur Olivier; Vilarinhos Alberto D; Kanamori Hiroyuki; Matsumoto Takashi; Ronning Catherine M; Cheung Foo; Haas Brian J; Althoff Ryan; Arbogast Tammy; Hine Erin; Pappas Georgios J; Sasaki Takuji; Souza Manoel T; Miller Robert N G; Glaszmann Jean-Christophe; Town Christopher D
Insights into the Musa genome: syntenic relationships to rice and between Musa species.
BMC genomics 2008;9():58.
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2007: Hernández Georgina; Ramírez Mario; Valdés-López Oswaldo; Tesfaye Mesfin; Graham Michelle A; Czechowski Tomasz; Schlereth Armin; Wandrey Maren; Erban Alexander; Cheung Foo; Wu Hank C; Lara Miguel; Town Christopher D; Kopka Joachim; Udvardi Michael K; Vance Carroll P
Phosphorus stress in common bean: root transcript and metabolic responses.
Plant physiology 2007;144(2):752-67.
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2007: Liu Jinyuan; Maldonado-Mendoza Ignacio; Lopez-Meyer Melina; Cheung Foo; Town Christopher D; Harrison Maria J
Arbuscular mycorrhizal symbiosis is accompanied by local and systemic alterations in gene expression and an increase in disease resistance in the shoots.
The Plant journal : for cell and molecular biology 2007;50(3):529-44.
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2007: Febrer Melanie; Cheung Foo; Town Christopher D; Cannon Steven B; Young Nevin D; Abberton Michael T; Jenkins Glyn; Milbourne Dan
Construction, characterization, and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.).
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2007;50(4):412-21.
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2007: Childs Kevin L; Hamilton John P; Zhu Wei; Ly Eugene; Cheung Foo; Wu Hank; Rabinowicz Pablo D; Town Chris D; Buell C Robin; Chan Agnes P
The TIGR Plant Transcript Assemblies database.
Nucleic acids research 2007;35(Database issue):D846-51.
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2007: Cheung Foo; Town Christopher D
A BAC end view of the Musa acuminata genome.
BMC plant biology 2007;7():29.
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2007: Udall Joshua A; Flagel Lex E; Cheung Foo; Woodward Andrew W; Hovav Ran; Rapp Ryan A; Swanson Jordan M; Lee Jinsuk J; Gingle Alan R; Nettleton Dan; Town Christopher D; Chen Z Jeffrey; Wendel Jonathan F
Spotted cotton oligonucleotide microarrays for gene expression analysis.
BMC genomics 2007;8():81.
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2006: Jakse Jernej; Telgmann Alexa; Jung Christian; Khar Anil; Melgar Sergio; Cheung Foo; Town Christopher D; Havey Michael J
Comparative sequence and genetic analyses of asparagus BACs reveal no microsynteny with onion or rice.
TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik 2006;114(1):31-9.
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2006: Cannon Steven B; Sterck Lieven; Rombauts Stephane; Sato Shusei; Cheung Foo; Gouzy Jérôme; Wang Xiaohong; Mudge Joann; Vasdewani Jayprakash; Schiex Thomas; Spannagl Manuel; Monaghan Erin; Nicholson Christine; Humphray Sean J; Schoof Heiko; Mayer Klaus F X; Rogers Jane; Quétier Francis; Oldroyd Giles E; Debellé Frédéric; Cook Douglas R; Retzel Ernest F; Roe Bruce A; Town Christopher D; Tabata Satoshi; Van de Peer Yves; Young Nevin D
Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes.
Proceedings of the National Academy of Sciences of the United States of America 2006;103(40):14959-64.
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2006: Samuel Yang S; Cheung Foo; Lee Jinsuk J; Ha Misook; Wei Ning E; Sze Sing-Hoi; Stelly David M; Thaxton Peggy; Triplett Barbara; Town Christopher D; Jeffrey Chen Z
Accumulation of genome-specific transcripts, transcription factors and phytohormonal regulators during early stages of fiber cell development in allotetraploid cotton.
The Plant journal : for cell and molecular biology 2006;47(5):761-75.
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2006: Town Christopher D; Cheung Foo; Maiti Rama; Crabtree Jonathan; Haas Brian J; Wortman Jennifer R; Hine Erin E; Althoff Ryan; Arbogast Tamara S; Tallon Luke J; Vigouroux Marielle; Trick Martin; Bancroft Ian
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy.
The Plant cell 2006;18(6):1348-59.
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2006: Chan Agnes P; Pertea Geo; Cheung Foo; Lee Dan; Zheng Li; Whitelaw Cathy; Pontaroli Ana C; SanMiguel Phillip; Yuan Yinan; Bennetzen Jeffrey; Barbazuk William Brad; Quackenbush John; Rabinowicz Pablo D
The TIGR Maize Database.
Nucleic acids research 2006;34(Database issue):D771-6.
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2006: Cheung Foo; Haas Brian J; Goldberg Susanne M D; May Gregory D; Xiao Yongli; Town Christopher D
Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
BMC genomics 2006;7():272.
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2005: Kuhl Joseph C; Havey Michael J; Martin William J; Cheung Foo; Yuan Qiaoping; Landherr Lena; Hu Yi; Leebens-Mack James; Town Christopher D; Sink Kenneth C
Comparative genomic analyses in Asparagus.
Genome / National Research Council Canada = Génome / Conseil national de recherches Canada 2005;48(6):1052-60.
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2005: Brown Daren W; Cheung Foo; Proctor Robert H; Butchko Robert A E; Zheng Li; Lee Yuandan; Utterback Teresa; Smith Shannon; Feldblyum Tamara; Glenn Anthony E; Plattner Ronald D; Kendra David F; Town Christopher D; Whitelaw Catherine A
Comparative analysis of 87,000 expressed sequence tags from the fumonisin-producing fungus Fusarium verticillioides.
Fungal genetics and biology : FG & B 2005;42(10):848-61.
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2005: Cannon Steven B; Crow John A; Heuer Michael L; Wang Xiaohong; Cannon Ethalinda K S; Dwan Christopher; Lamblin Anne-Francoise; Vasdewani Jayprakash; Mudge Joann; Cook Andrew; Gish John; Cheung Foo; Kenton Steve; Kunau Timothy M; Brown Douglas; May Gregory D; Kim Dongjin; Cook Douglas R; Roe Bruce A; Town Chris D; Young Nevin D; Retzel Ernest F
Databases and information integration for the Medicago truncatula genome and transcriptome.
Plant physiology 2005;138(1):38-46.
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2005: Yuan Qiaoping; Ouyang Shu; Wang Aihui; Zhu Wei; Maiti Rama; Lin Haining; Hamilton John; Haas Brian; Sultana Razvan; Cheung Foo; Wortman Jennifer; Buell C Robin
The institute for genomic research Osa1 rice genome annotation database.
Plant physiology 2005;138(1):18-26.
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2005: Lee Y; Tsai J; Sunkara S; Karamycheva S; Pertea G; Sultana R; Antonescu V; Chan A; Cheung F; Quackenbush J
The TIGR Gene Indices: clustering and assembling EST and known genes and integration with eukaryotic genomes.
Nucleic acids research 2005;33(Database issue):D71-4.
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2004: Kuhl Joseph C; Cheung Foo; Yuan Qiaoping; Martin William; Zewdie Yayeh; McCallum John; Catanach Andrew; Rutherford Paul; Sink Kenneth C; Jenderek Maria; Prince James P; Town Christopher D; Havey Michael J
A unique set of 11,008 onion expressed sequence tags reveals expressed sequence and genomic differences between the monocot orders Asparagales and Poales.
The Plant cell 2004;16(1):114-25.
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2003: Whitelaw C A; Barbazuk W B; Pertea G; Chan A P; Cheung F; Lee Y; Zheng L; van Heeringen S; Karamycheva S; Bennetzen J L; SanMiguel P; Lakey N; Bedell J; Yuan Y; Budiman M A; Resnick A; Van Aken S; Utterback T; Riedmuller S; Williams M; Feldblyum T; Schubert K; Beachy R; Fraser C M; Quackenbush J
Enrichment of gene-coding sequences in maize by genome filtration.
Science (New York, N.Y.) 2003;302(5653):2118-20.
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2003: Pertea Geo; Huang Xiaoqiu; Liang Feng; Antonescu Valentin; Sultana Razvan; Karamycheva Svetlana; Lee Yuandan; White Joseph; Cheung Foo; Parvizi Babak; Tsai Jennifer; Quackenbush John
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets.
Bioinformatics (Oxford, England) 2003;19(5):651-2.
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2003: Kim Heenam; Snesrud Erik C; Haas Brian; Cheung Foo; Town Christopher D; Quackenbush John
Gene expression analyses of Arabidopsis chromosome 2 using a genomic DNA amplicon microarray.
Genome research 2003;13(3):327-40.
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2003: Yuan Qiaoping; Ouyang Shu; Liu Jia; Suh Bernard; Cheung Foo; Sultana Razvan; Lee Dan; Quackenbush John; Buell C Robin
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists.
Nucleic acids research 2003;31(1):229-33.
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2002: Lee Yuandan; Sultana Razvan; Pertea Geo; Cho Jennifer; Karamycheva Svetlana; Tsai Jennifer; Parvizi Babak; Cheung Foo; Antonescu Valentin; White Joseph; Holt Ingeborg; Liang Feng; Quackenbush John
Cross-referencing eukaryotic genomes: TIGR Orthologous Gene Alignments (TOGA).
Genome research 2002;12(3):493-502.
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2001: Tsai J; Sultana R; Lee Y; Pertea G; Karamycheva S; Antonescu V; Cho J; Parvizi B; Cheung F; Quackenbush J
RESOURCERER: a database for annotating and linking microarray resources within and across species.
Genome biology 2001;2(11):SOFTWARE0002.
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