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Giovanni Chillemi

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TOP 3
Balasubramanian Chandramouli; Giovanni Chillemi; Emanuela Giombini; Gabriella Rozera; Maria R Capobianchi; Alessandro Desideri
Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120.
Francesco Cicconardi; Cinzia Marchitelli; Paolo Ajmone-Marsan; Giovanni Chillemi; Anna Tramontano; Alessio Valentini; Alessandro Nardone
Massive screening of copy number population-scale variation in Bos taurus genome.
Andrea Zitolo; Giovanni Chillemi; Paola D'Angelo
X-ray absorption study of the solvation structure of Cu2+ in methanol and dimethyl sulfoxide.

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2013: Balasubramanian Chandramouli; Giovanni Chillemi; Emanuela Giombini; Gabriella Rozera; Maria R Capobianchi; Alessandro Desideri
Structural dynamics of V3 loop with different electrostatics: implications on co-receptor recognition: a molecular dynamics study of HIV gp120.
Journal of biomolecular structure & dynamics 2013;31(4):403-13.
2013: Francesco Cicconardi; Cinzia Marchitelli; Paolo Ajmone-Marsan; Giovanni Chillemi; Anna Tramontano; Alessio Valentini; Alessandro Nardone
Massive screening of copy number population-scale variation in Bos taurus genome.
BMC genomics 2013;14():124.
2012: Andrea Zitolo; Giovanni Chillemi; Paola D'Angelo
X-ray absorption study of the solvation structure of Cu2+ in methanol and dimethyl sulfoxide.
Inorganic chemistry 2012;51(16):8827-33.
2012: Paola D'Angelo; stefano della longa; Gabriele Giachin; Giuseppe Legname; Giordano Mancini; Andrea Zitolo; Alessandro Arcovito; Giovanni Chillemi; Federico Benetti
Effects of the pathological Q212P mutation on human prion protein non-octarepeat copper-binding site.
Biochemistry 2012;51(31):6068-79.
2012: Giordano Mancini; Yves Pommier; Giovanni Chillemi; Andrea Coletta; Mark Cushman; Ilda D'Annessa; Alessandro Desideri
Binding of an Indenoisoquinoline to the topoisomerase-DNA complex induces reduction of linker mobility and strengthening of protein-DNA interaction.
PloS one 2012;7(12):e51354.
2012: Silvia Bongiorni; Giovanni Chillemi; Giordano Mancini; Lorraine Pariset; Alessio Valentini
Identification of a short region on chromosome 6 affecting direct calving ease in Piedmontese cattle breed.
PloS one 2012;7(12):e50137.
2012: Giovanni Chillemi; Andrea Battistoni; Serena De Santis; Alessandro Desideri; Mattia Falconi; Giordano Mancini; Valentina Migliorati; Francesca Pacello; Paola D'Angelo
Carbon monoxide binding to the heme group at the dimeric interface modulates structure and copper accessibility in the Cu,Zn superoxide dismutase from Haemophilus ducreyi: in silico and in vitro evidences.
Journal of biomolecular structure & dynamics 2012;30(3):269-79.
2012: Ilda D'Annessa; Giovanni Capranico; Silvia Castelli; Giovanni Chillemi; Paola Fiorani; cinzia tesauro; Oscar Vassallo; Alessandro Desideri
Role of Flexibility in Protein-DNA-Drug Recognition: The Case of Asp677Gly-Val703Ile Topoisomerase Mutant Hypersensitive to Camptothecin.
Journal of amino acids 2012;2012():206083.
2012: Balasubramanian Chandramouli; Giovanni Chillemi; Isabella Abbate; Maria Rosaria Capobianchi; Gabriella Rozera; Alessandro Desideri
Importance of V3 loop flexibility and net charge in the context of co-receptor recognition. A molecular dynamics study on HIV gp120.
Journal of biomolecular structure & dynamics 2012;29(5):879-91.
2011: Barbara Bartolini; Alessandro Bruselles; Isabella Abbate; Tiziana Castrignanò; Giovanni Chillemi; Alessandro Desideri; Daniele Paoletti; Graziano Pesole; Ernesto Picardi; Gabriella Rozera; Maria R Capobianchi
Assembly and characterization of pandemic influenza A H1N1 genome in nasopharyngeal swabs using high-throughput pyrosequencing.
The new microbiologica 2011;34(4):391-7.
2011: Valentina Migliorati; Giovanni Chillemi; Paola D'Angelo
On the solvation of the Zn2+ ion in methanol: a combined quantum mechanics, molecular dynamics, and EXAFS approach.
Inorganic chemistry 2011;50(17):8509-15.
2011: Paola D'Angelo; Andrea Zitolo; Valentina Migliorati; Giovanni Chillemi; Magali Duvail; Pierre Vitorge; Sacha Abadie; Riccardo Spezia
Revised ionic radii of lanthanoid(III) ions in aqueous solution.
Inorganic chemistry 2011;50(10):4572-9.
2011: Valentina Migliorati; Giordano Mancini; Giovanni Chillemi; Andrea Zitolo; Paola D'Angelo
Effect of the Zn2+ and Hg2+ ions on the structure of liquid water.
The journal of physical chemistry. A 2011;115(18):4798-803.
2010: Daniele Di Marino; Francesco Oteri; Blasco Morozzo della Rocca; Giovanni Chillemi; Mattia Falconi
ADP/ATP mitochondrial carrier MD simulations to shed light on the structural-dynamical events that, after an additional mutation, restore the function in a pathological single mutant.
Journal of structural biology 2010;172(3):225-32.
2010: cinzia tesauro; Paola Fiorani; Ilda D'Annessa; Giovanni Chillemi; Gino Turchi; Alessandro Desideri
Erybraedin C, a natural compound from the plant Bituminaria bituminosa, inhibits both the cleavage and religation activities of human topoisomerase I.
The Biochemical journal 2010;425(3):531-9.
2010: Francesca Amati; Laura Diano; Luisa Campagnolo; Lucia Vecchione; daria cipollone; Susana Bueno; Gianluca Prosperini; Alessandro Desideri; Gregorio Siracusa; Giovanni Chillemi; Bruno Marino; Giuseppe Novelli
Hif1α down-regulation is associated with transposition of great arteries in mice treated with a retinoic acid antagonist.
BMC genomics 2010;11():497.
2010: Giordano Mancini; Ilda D'Annessa; Andrea Coletta; Nico Sanna; Giovanni Chillemi; Alessandro Desideri
Structural and dynamical effects induced by the anticancer drug topotecan on the human topoisomerase I - DNA complex.
PloS one 2010;5(6):e10934.
2009: Paola D'Angelo; Andrea Zitolo; Valentina Migliorati; Giordano Mancini; Ingmar Persson; Giovanni Chillemi
Structural investigation of lanthanoid coordination: a combined XANES and molecular dynamics study.
Inorganic chemistry 2009;48(21):10239-48.
2009: Paola Fiorani; cinzia tesauro; Giordano Mancini; Giovanni Chillemi; Ilda D'Annessa; Grazia Graziani; Lucio Tentori; Alessia Muzi; Alessandro Desideri
Evidence of the crucial role of the linker domain on the catalytic activity of human topoisomerase I by experimental and simulative characterization of the Lys681Ala mutant.
Nucleic acids research 2009;37(20):6849-58.
2009: Mattia Falconi; Francesco Oteri; Giovanni Chillemi; Felicie F Andersen; David Tordrup; Cristiano L P Oliveira; Jan S Pedersen; Birgitta R Knudsen; Alessandro Desideri
Deciphering the structural properties that confer stability to a DNA nanocage.
ACS nano 2009;3(7):1813-22.
2009: Nico Sanna; Giovanni Chillemi; Lorenzo Gontrani; Andrea Grandi; Giordano Mancini; Silvia Castelli; Giuseppe Zagotto; Costantino Zazza; Vincenzo Barone; Alessandro Desideri
UV-vis spectra of the anticancer camptothecin family drugs in aqueous solution: specific spectroscopic signatures unraveled by a combined computational and experimental study.
The journal of physical chemistry. B 2009;113(16):5369-75.
2009: Silvia Bongiorni; Susana Bueno; Giovanni Chillemi; Gianluca Prosperini; Alessio Valentini; Lorraine Pariset
A tool for sheep product quality: custom microarrays from public databases.
Nutrients 2009;1(2):235-50.
2008: Paola D'Angelo; Valentina Migliorati; Giovanna Mancini; Giovanni Chillemi
A coupled molecular dynamics and XANES data analysis investigation of aqueous cadmium(II).
The journal of physical chemistry. A 2008;112(46):11833-41.
2008: Carmen Losasso; Erica Cretaio; Paola Fiorani; Ilda D'Annessa; Giovanni Chillemi; Piero Benedetti
A single mutation in the 729 residue modulates human DNA topoisomerase IB DNA binding and drug resistance.
Nucleic acids research 2008;36(17):5635-44.
2008: Giovanni Chillemi; Ilda D'Annessa; Paola Fiorani; Carmen Losasso; Piero Benedetti; Alessandro Desideri
Thr729 in human topoisomerase I modulates anti-cancer drug resistance by altering protein domain communications as suggested by molecular dynamics simulations.
Nucleic acids research 2008;36(17):5645-51.
2008: Paola D'Angelo; Valentina Migliorati; Giovanna Mancini; Vincenzo Barone; Giovanni Chillemi
Integrated experimental and theoretical approach for the structural characterization of Hg2+ aqueous solutions.
The Journal of chemical physics 2008;128(8):084502.
2007: Michela Biancolella; Alessandra Valentini; Daniela Minella; Lucia Vecchione; Franca D'Amico; Giovanni Chillemi; Paolo Gravina; Susana Bueno; Gianluca Prosperini; Alessandro Desideri; Giorgio Federici; Sergio Bernardini; Giuseppe Novelli
Effects of dutasteride on the expression of genes related to androgen metabolism and related pathway in human prostate cancer cell lines.
Investigational new drugs 2007;25(5):491-7.
2007: Giovanni Chillemi; Paola Fiorani; Alessandro Bruselles; Silvia Castelli; Alessia Campagna; Ofelia Sarra; cinzia tesauro; Monica Fiorentini; Oscar Vassallo; Ilda D'Annessa; Sabrina Santoleri; Alessandro Desideri
Role of flexibility and long range communication on the function of human topoisomerase I.
The Italian journal of biochemistry 2007;56(2):110-4.
2007: Alessandra Valentini; Michela Biancolella; Francesca Amati; Paolo Gravina; Roberto Miano; Giovanni Chillemi; Alessio Farcomeni; Susana Bueno; Giuseppe Vespasiani; Alessandro Desideri; Giorgio Federici; Giuseppe Novelli; Sergio Bernardini
Valproic acid induces neuroendocrine differentiation and UGT2B7 up-regulation in human prostate carcinoma cell line.
Drug metabolism and disposition: the biological fate of chemicals 2007;35(6):968-72.
2007: Giovanni Chillemi; Giovanna Mancini; Nico Sanna; Vincenzo Barone; stefano della longa; Maurizio Benfatto; Nicolae Viorel Pavel; Paola D'Angelo
Evidence for sevenfold coordination in the first solvation shell of Hg(II) aqua ion.
Journal of the American Chemical Society 2007;129(17):5430-6.
2007: Francesca Amati; Michela Biancolella; Alessio Farcomeni; Stefania Giallonardi; Susana Bueno; Daniela Minella; Lucia Vecchione; Giovanni Chillemi; Alessandro Desideri; Giuseppe Novelli
Dynamic changes in gene expression profiles of 22q11 and related orthologous genes during mouse development.
Gene 2007;391(1-2):91-102.
2007: Giovanni Chillemi; Alessandro Bruselles; Paola Fiorani; Susana Bueno; Alessandro Desideri
The open state of human topoisomerase I as probed by molecular dynamics simulation.
Nucleic acids research 2007;35(9):3032-8.
2006: Riccardo Spezia; Magali Duvail; Pierre Vitorge; Thierry Cartailler; Jeanine Tortajada; Giovanni Chillemi; Paola D'Angelo; Marie-Pierre Gaigeot
A coupled Car-Parrinello molecular dynamics and EXAFS data analysis investigation of aqueous Co(2+).
The journal of physical chemistry. A 2006;110(48):13081-8.
2006: stefano gambardella; Michela Biancolella; Maria Rosaria D'Apice; Francesca Amati; Federica Sangiuolo; Alessio Farcomeni; Giovanni Chillemi; Susana Bueno; Alessandro Desideri; Giuseppe Novelli
Gene expression profile study in CFTR mutated bronchial cell lines.
Clinical and experimental medicine 2006;6(4):157-65.
2006: Mattia Falconi; Giovanni Chillemi; D Di Marino; I D'Annessa; Blasco Morozzo della Rocca; Luigi Palmieri; Alessandro Desideri
Structural dynamics of the mitochondrial ADP/ATP carrier revealed by molecular dynamics simulation studies.
Proteins 2006;65(3):681-91.
2006: Costantino Zazza; Andrea Amadei; Nico Sanna; Andrea Grandi; Giovanni Chillemi; Alfredo Di Nola; Marco D'Abramo; Massimiliano Aschi
Theoretical modeling of the valence UV spectra of 1,2,3-triazine and uracil in solution.
Physical chemistry chemical physics : PCCP 2006;8(12):1385-93.
2006: Paola D'Angelo; Otello Maria Roscioni; Giovanni Chillemi; stefano della longa; Maurizio Benfatto
Detection of second hydration shells in ionic solutions by XANES: computed spectra for Ni2+ in water based on molecular dynamics.
Journal of the American Chemical Society 2006;128(6):1853-8.
2006: Paola Fiorani; Giovanni Chillemi; Carmen Losasso; Silvia Castelli; Alessandro Desideri
The different cleavage DNA sequence specificity explains the camptothecin resistance of the human topoisomerase I Glu418Lys mutant.
Nucleic acids research 2006;34(18):5093-100.
2005: Nico Sanna; Giovanni Chillemi; Andrea Grandi; Silvia Castelli; Alessandro Desideri; Vincenzo Barone
New hints on the Ph-driven tautomeric equilibria of the topotecan anticancer drug in aqueous solutions from an integrated spectroscopic and quantum-mechanical approach.
Journal of the American Chemical Society 2005;127(44):15429-36.
2005: Giovanni Chillemi; Vincenzo Barone; Paola D'Angelo; Giovanna Mancini; Ingmar Persson; Nico Sanna
Computational evidence for a variable first shell coordination of the cadmium(II) ion in aqueous solution.
The journal of physical chemistry. B 2005;109(18):9186-93.
2005: Paola D'Angelo; Giovanni Chillemi; Vincenzo Barone; Giovanna Mancini; Nico Sanna; Ingmar Persson
Experimental evidence for a variable first coordination shell of the cadmium(II) ion in aqueous, dimethyl sulfoxide, and N,N'-dimethylpropyleneurea solution.
The journal of physical chemistry. B 2005;109(18):9178-85.
2005: Giovanni Chillemi; Paola Fiorani; Silvia Castelli; Alessandro Bruselles; Piero Benedetti; Alessandro Desideri
Effect on DNA relaxation of the single Thr718Ala mutation in human topoisomerase I: a functional and molecular dynamics study.
Nucleic acids research 2005;33(10):3339-50.
2005: Otello Maria Roscioni; Paola D'Angelo; Giovanni Chillemi; stefano della longa; Maurizio Benfatto
Quantitative analysis of XANES spectra of disordered systems based on molecular dynamics.
Journal of synchrotron radiation 2005;12(Pt 1):75-9.
2004: Giovanni Chillemi; M Redinbo; Alessandro Bruselles; Alessandro Desideri
Role of the linker domain and the 203-214 N-terminal residues in the human topoisomerase I DNA complex dynamics.
Biophysical journal 2004;87(6):4087-97.
2003: Paola Fiorani; Alessandro Bruselles; Mattia Falconi; Giovanni Chillemi; Alessandro Desideri; Piero Benedetti
Single mutation in the linker domain confers protein flexibility and camptothecin resistance to human topoisomerase I.
The Journal of biological chemistry 2003;278(44):43268-75.
2003: Giovanni Chillemi; Paola Fiorani; Piero Benedetti; Alessandro Desideri
Protein concerted motions in the DNA-human topoisomerase I complex.
Nucleic acids research 2003;31(5):1525-35.
2002: Tiziana Castrignanò; Giovanni Chillemi; Gabriele Varani; Alessandro Desideri
Molecular dynamics simulation of the RNA complex of a double-stranded RNA-binding domain reveals dynamic features of the intermolecular interface and its hydration.
Biophysical journal 2002;83(6):3542-52.
2002: Giovanni Chillemi; Paola D'Angelo; Nicolae Viorel Pavel; Nico Sanna; Vincenzo Barone
Development and validation of an integrated computational approach for the study of ionic species in solution by means of effective two-body potentials. The case of Zn2+, Ni2+, and Co2+ in aqueous solutions.
Journal of the American Chemical Society 2002;124(9):1968-76.
2002: Paola D'Angelo; Vincenzo Barone; Giovanni Chillemi; Nico Sanna; Wolfram Meyer-Klaucke; Nicolae Viorel Pavel
Hydrogen and higher shell contributions in Zn2+, Ni2+, and Co2+ aqueous solutions: an X-ray absorption fine structure and molecular dynamics study.
Journal of the American Chemical Society 2002;124(9):1958-67.
2001: Giovanni Chillemi; Tiziana Castrignanò; Alessandro Desideri
Structure and hydration of the DNA-human topoisomerase I covalent complex.
Biophysical journal 2001;81(1):490-500.
2000: Tiziana Castrignanò; Giovanni Chillemi; Alessandro Desideri
Structure and hydration of BamHI DNA recognition site: a molecular dynamics investigation.
Biophysical journal 2000;79(3):1263-72.
1997: Giovanni Chillemi; Mattia Falconi; Andrea Amadei; Giovanna Zimatore; Alessandro Desideri; Alfredo Di Nola
The essential dynamics of Cu, Zn superoxide dismutase: suggestion of intersubunit communication.
Biophysical journal 1997;73(2):1007-18.