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Jean-Michel Claverie
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31
Audic, Stéphane
28
Abergel, Chantal
16
Suhre, Karsten
15
Raoult, Didier
10
Ogata, Hiroyuki
10
Poirot, Olivier
9
Ogata, Hiroyuki
8
Renesto, Patricia
7
blanc, guillaume
7
Chenivesse, Sabine
7
Monchois, Vincent
6
Jeudy, Sandra
6
Robert, Catherine
5
Lopez, F
4
La Scola, Bernard
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All Publications
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2009: Monier Adam; Pagarete António; de Vargas Colomban; Allen Michael J; Read Betsy; Claverie Jean-Michel; Ogata Hiroyuki
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus.
Genome research 2009;19(8):1441-9.
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2009: Claverie Jean-Michel; Grzela Renata; Lartigue Audrey; Bernadac Alain; Nitsche Serge; Vacelet Jean; Ogata Hiroyuki; Abergel Chantal
Mimivirus and Mimiviridae: giant viruses with an increasing number of potential hosts, including corals and sponges.
Journal of invertebrate pathology 2009;101(3):172-80.
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2009: Jeudy Sandra; Lartigue Audrey; Claverie Jean-Michel; Abergel Chantal
Dissecting the unique nucleotide specificity of mimivirus nucleoside diphosphate kinase.
Journal of virology 2009;83(14):7142-50.
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2009: Byrne Deborah; Grzela Renata; Lartigue Audrey; Audic Stéphane; Chenivesse Sabine; Encinas Stéphanie; Claverie Jean-Michel; Abergel Chantal
The polyadenylation site of Mimivirus transcripts obeys a stringent 'hairpin rule'.
Genome research 2009;19(7):1233-42.
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2009: Claverie J M; Abergel C; Ogata H
Mimivirus.
Current topics in microbiology and immunology 2009;328():89-121.
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2008: Ogata Hiroyuki; Claverie Jean-Michel
Microbiology. How to infect a Mimivirus.
Science (New York, N.Y.) 2008;321(5894):1305-6.
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2008: Lescot Magali; Audic Stéphane; Robert Catherine; Nguyen Thi Tien; Blanc Guillaume; Cutler Sally J; Wincker Patrick; Couloux Arnaud; Claverie Jean-Michel; Raoult Didier; Drancourt Michel
The genome of Borrelia recurrentis, the agent of deadly louse-borne relapsing fever, is a degraded subset of tick-borne Borrelia duttonii.
PLoS genetics 2008;4(9):e1000185.
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2008: Santini Sébastien; Monchois Vincent; Mouz Nicolas; Sigoillot Cécile; Rousselle Tristan; Claverie Jean-Michel; Abergel Chantal
Structural characterization of CA1462, the Candida albicans thiamine pyrophosphokinase.
BMC structural biology 2008;8():33.
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2008: Monier Adam; Claverie Jean-Michel; Ogata Hiroyuki
Taxonomic distribution of large DNA viruses in the sea.
Genome biology 2008;9(7):R106.
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2008: Vallenet David; Nordmann Patrice; Barbe Valérie; Poirel Laurent; Mangenot Sophie; Bataille Elodie; Dossat Carole; Gas Shahinaz; Kreimeyer Annett; Lenoble Patricia; Oztas Sophie; Poulain Julie; Segurens Béatrice; Robert Catherine; Abergel Chantal; Claverie Jean-Michel; Raoult Didier; Médigue Claudine; Weissenbach Jean; Cruveiller Stéphane
Comparative analysis of Acinetobacters: three genomes for three lifestyles.
PloS one 2008;3(3):e1805.
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2008: Monier Adam; Larsen Jens Borggaard; Sandaa Ruth-Anne; Bratbak Gunnar; Claverie Jean-Michel; Ogata Hiroyuki
Marine mimivirus relatives are probably large algal viruses.
Virology journal 2008;5():12.
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2007: Blanc Guillaume; Ogata Hiroyuki; Robert Catherine; Audic Stéphane; Claverie Jean-Michel; Raoult Didier
Lateral gene transfer between obligate intracellular bacteria: evidence from the Rickettsia massiliae genome.
Genome research 2007;17(11):1657-64.
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2007: Abergel Chantal; Rudinger-Thirion Joëlle; Giegé Richard; Claverie Jean-Michel
Virus-encoded aminoacyl-tRNA synthetases: structural and functional characterization of mimivirus TyrRS and MetRS.
Journal of virology 2007;81(22):12406-17.
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2007: Ogata Hiroyuki; Claverie Jean-Michel
Unique genes in giant viruses: regular substitution pattern and anomalously short size.
Genome research 2007;17(9):1353-61.
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2007: Audic Stéphane; Robert Catherine; Campagna Bernard; Parinello Hugues; Claverie Jean-Michel; Raoult Didier; Drancourt Michel
Genome analysis of Minibacterium massiliensis highlights the convergent evolution of water-living bacteria.
PLoS genetics 2007;3(8):e138.
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2007: Abergel Chantal; Monchois Vincent; Byrne Deborah; Chenivesse Sabine; Lembo Frédérique; Lazzaroni Jean-Claude; Claverie Jean-Michel
Structure and evolution of the Ivy protein family, unexpected lysozyme inhibitors in Gram-negative bacteria.
Proceedings of the National Academy of Sciences of the United States of America 2007;104(15):6394-9.
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2007: Blanc Guillaume; Ogata Hiroyuki; Robert Catherine; Audic Stéphane; Suhre Karsten; Vestris Guy; Claverie Jean-Michel; Raoult Didier
Reductive genome evolution from the mother of Rickettsia.
PLoS genetics 2007;3(1):e14.
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2007: Monier Adam; Claverie Jean-Michel; Ogata Hiroyuki
Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses.
BMC genomics 2007;8():456.
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2007: Unneberg Per; Claverie Jean-Michel
Tentative mapping of transcription-induced interchromosomal interaction using chimeric EST and mRNA data.
PloS one 2007;2(2):e254.
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2006: Renesto Patricia; Abergel Chantal; Decloquement Philippe; Moinier Danielle; Azza Saïd; Ogata Hiroyuki; Fourquet Patrick; Gorvel Jean-Pierre; Claverie Jean-Michel
Mimivirus giant particles incorporate a large fraction of anonymous and unique gene products.
Journal of virology 2006;80(23):11678-85.
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2006: Abergel Chantal; Blanc Guillaume; Monchois Vincent; Renesto Patricia; Sigoillot Cécile; Ogata Hiroyuki; Raoult Didier; Claverie Jean-Michel
Impact of the excision of an ancient repeat insertion on Rickettsia conorii guanylate kinase activity.
Molecular biology and evolution 2006;23(11):2112-22.
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2006: Jeudy Sandra; Claverie Jean-Michel; Abergel Chantal
The nucleoside diphosphate kinase from mimivirus: a peculiar affinity for deoxypyrimidine nucleotides.
Journal of bioenergetics and biomembranes 2006;38(3-4):247-54.
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2006: Ogata Hiroyuki; La Scola Bernard; Audic Stéphane; Renesto Patricia; Blanc Guillaume; Robert Catherine; Fournier Pierre-Edouard; Claverie Jean-Michel; Raoult Didier
Genome sequence of Rickettsia bellii illuminates the role of amoebae in gene exchanges between intracellular pathogens.
PLoS genetics 2006;2(5):e76.
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2006: Claverie Jean-Michel; Ogata Hiroyuki; Audic Stéphane; Abergel Chantal; Suhre Karsten; Fournier Pierre-Edouard
Mimivirus and the emerging concept of "giant" virus.
Virus research 2006;117(1):133-44.
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2006: Fournier Pierre-Edouard; Vallenet David; Barbe Valérie; Audic Stéphane; Ogata Hiroyuki; Poirel Laurent; Richet Hervé; Robert Catherine; Mangenot Sophie; Abergel Chantal; Nordmann Patrice; Weissenbach Jean; Raoult Didier; Claverie Jean-Michel
Comparative genomics of multidrug resistance in Acinetobacter baumannii.
PLoS genetics 2006;2(1):e7.
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2006: Jeudy Sandra; Monchois Vincent; Maza Caroline; Claverie Jean-Michel; Abergel Chantal
Crystal structure of Escherichia coli DkgA, a broad-specificity aldo-keto reductase.
Proteins 2006;62(1):302-7.
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2006: Claverie Jean-Michel
Viruses take center stage in cellular evolution.
Genome biology 2006;7(6):110.
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2006: Bidaut Ghislain; Suhre Karsten; Claverie Jean-Michel; Ochs Michael F
Determination of strongly overlapping signaling activity from microarray data.
BMC bioinformatics 2006;7():99.
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2005: Ogata H; Robert C; Audic S; Robineau S; Blanc G; Fournier P E; Renesto P; Claverie J M; Raoult D
Rickettsia felis, from culture to genome sequencing.
Annals of the New York Academy of Sciences 2005;1063():26-34.
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2005: Suhre Karsten; Audic Stéphane; Claverie Jean-Michel
Mimivirus gene promoters exhibit an unprecedented conservation among all eukaryotes.
Proceedings of the National Academy of Sciences of the United States of America 2005;102(41):14689-93.
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2005: Ogata Hiroyuki; Renesto Patricia; Audic Stéphane; Robert Catherine; Blanc Guillaume; Fournier Pierre-Edouard; Parinello Hugues; Claverie Jean-Michel; Raoult Didier
The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite.
PLoS biology 2005;3(8):e248.
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2005: Ogata Hiroyuki; Suhre Karsten; Claverie Jean-Michel
Discovery of protein-coding palindromic repeats in Wolbachia.
Trends in microbiology 2005;13(6):253-5.
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2005: Abergel Chantal; Chenivesse Sabine; Byrne Deborah; Suhre Karsten; Arondel Vincent; Claverie Jean-Michel
Mimivirus TyrRS: preliminary structural and functional characterization of the first amino-acyl tRNA synthetase found in a virus.
Acta crystallographica. Section F, Structural biology and crystallization communications 2005;61(Pt 2):212-5.
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2005: Renesto Patricia; Ogata Hiroyuki; Audic Stéphane; Claverie Jean-Michel; Raoult Didier
Some lessons from Rickettsia genomics.
FEMS microbiology reviews 2005;29(1):99-117.
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2005: Ogata Hiroyuki; Claverie Jean-Michel
Metagrowth: a new resource for the building of metabolic hypotheses in microbiology.
Nucleic acids research 2005;33(Database issue):D321-4.
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2005: Enault François; Suhre Karsten; Claverie Jean-Michel
Phydbac "Gene Function Predictor": a gene annotation tool based on genomic context analysis.
BMC bioinformatics 2005;6():247.
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2005: Bidaut Ghislain; Suhre Karsten; Claverie Jean-Michel; Ochs Michael F
Bayesian decomposition analysis of bacterial phylogenomic profiles.
American journal of pharmacogenomics : genomics-related research in drug development and clinical practice 2005;5(1):63-70.
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2004: Raoult Didier; Audic Stéphane; Robert Catherine; Abergel Chantal; Renesto Patricia; Ogata Hiroyuki; La Scola Bernard; Suzan Marie; Claverie Jean-Michel
The 1.2-megabase genome sequence of Mimivirus.
Science (New York, N.Y.) 2004;306(5700):1344-50.
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2004: Claude Jean-Baptiste; Suhre Karsten; Notredame Cédric; Claverie Jean-Michel; Abergel Chantal
CaspR: a web server for automated molecular replacement using homology modelling.
Nucleic acids research 2004;32(Web Server issue):W606-9.
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2004: Enault François; Suhre Karsten; Poirot Olivier; Abergel Chantal; Claverie Jean-Michel
Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis.
Nucleic acids research 2004;32(Web Server issue):W336-9.
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2004: Suhre Karsten; Claverie Jean-Michel
FusionDB: a database for in-depth analysis of prokaryotic gene fusion events.
Nucleic acids research 2004;32(Database issue):D273-6.
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2003: Renesto Patricia; Crapoulet Nicolas; Ogata Hiroyuki; La Scola Bernard; Vestris Guy; Claverie Jean-Michel; Raoult Didier
Genome-based design of a cell-free culture medium for Tropheryma whipplei.
Lancet 2003;362(9382):447-9.
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2003: Raoult Didier; Ogata Hiroyuki; Audic Stephane; Robert Catherine; Suhre Karsten; Drancourt Michel; Claverie Jean-Michel
Tropheryma whipplei Twist: a human pathogenic Actinobacteria with a reduced genome.
Genome research 2003;13(8):1800-9.
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2003: Enault François; Suhre Karsten; Poirot Olivier; Abergel Chantal; Claverie Jean-Michel
Phydbac (phylogenomic display of bacterial genes): An interactive resource for the annotation of bacterial genomes.
Nucleic acids research 2003;31(13):3720-2.
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2003: Suhre Karsten; Claverie Jean-Michel
Genomic correlates of hyperthermostability, an update.
The Journal of biological chemistry 2003;278(19):17198-202.
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2003: La Scola Bernard; Audic Stéphane; Robert Catherine; Jungang Liang; de Lamballerie Xavier; Drancourt Michel; Birtles Richard; Claverie Jean-Michel; Raoult Didier
A giant virus in amoebae.
Science (New York, N.Y.) 2003;299(5615):2033.
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2003: Abergel Chantal; Coutard Bruno; Byrne Deborah; Chenivesse Sabine; Claude Jean-Baptiste; Deregnaucourt Céline; Fricaux Thierry; Gianesini-Boutreux Celine; Jeudy Sandra; Lebrun Régine; Maza Caroline; Notredame Cédric; Poirot Olivier; Suhre Karsten; Varagnol Majorie; Claverie Jean-Michel
Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets.
Journal of structural and functional genomics 2003;4(2-3):141-57.
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2003: Enault F; Suhre K; Abergel C; Poirot O; Claverie J-M
Annotation of bacterial genomes using improved phylogenomic profiles.
Bioinformatics (Oxford, England) 2003;19 Suppl 1():i105-7.
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2003: Mégy Karine; Audic Stéphane; Claverie Jean-Michel
Positional clustering of differentially expressed genes on human chromosomes 20, 21 and 22.
Genome biology 2003;4(2):P1.
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2002: Claverie Jean-Michel; Monchois Vincent; Audic Stéphane; Poirot Olivier; Abergel Chantal
In Ssarch of new anti-bacterial target genes: a comparative/structural genomics approach.
Combinatorial chemistry & high throughput screening 2002;5(7):511-22.
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2002: Mégy Karine; Audic Stéphane; Claverie Jean-Michel
Heart specific genes revealed by EST sampling.
Genome biology 2002;3(9):PREPRINT0008.
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2002: Ogata Hiroyuki; Audic Stéphane; Abergel Chantal; Fournier Pierre-Edouard; Claverie Jean-Michel
Protein coding palindromes are a unique but recurrent feature in Rickettsia.
Genome research 2002;12(5):808-16.
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2002: Mégy Karine; Audic Stéphane; Claverie Jean-Michel
Heart-specific genes revealed by expressed sequence tag (EST) sampling.
Genome biology 2002;3(12):RESEARCH0074.
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2001: Claverie J M; Abergel C; Audic S; Ogata H
Recent advances in computational genomics.
Pharmacogenomics 2001;2(4):361-72.
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2001: Ogata H; Audic S; Renesto-Audiffren P; Fournier P E; Barbe V; Samson D; Roux V; Cossart P; Weissenbach J; Claverie J M; Raoult D
Mechanisms of evolution in Rickettsia conorii and R. prowazekii.
Science (New York, N.Y.) 2001;293(5537):2093-8.
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2001: Monchois V; Abergel C; Sturgis J; Jeudy S; Claverie J M
Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme.
The Journal of biological chemistry 2001;276(21):18437-41.
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2000: Abergel C; Monchois V; Chenivesse S; Jeudy S; Claverie J M
Crystallization and preliminary crystallographic study of b0220, an 'ORFan' protein of unknown function from Escherichia coli.
Acta crystallographica. Section D, Biological crystallography 2000;56(Pt 12):1694-5.
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2000: Ogata H; Audic S; Barbe V; Artiguenave F; Fournier P E; Raoult D; Claverie J M
Selfish DNA in protein-coding genes of Rickettsia.
Science (New York, N.Y.) 2000;290(5490):347-50.
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2000: Claverie J M
From bioinformatics to computational biology.
Genome research 2000;10(9):1277-9.
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2000: Beaudoing E; Freier S; Wyatt J R; Claverie J M; Gautheret D
Patterns of variant polyadenylation signal usage in human genes.
Genome research 2000;10(7):1001-10.
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2000: Alimi J P; Poirot O; Lopez F; Claverie J M
Reverse transcriptase-polymerase chain reaction validation of 25 "orphan" genes from Escherichia coli K-12 MG1655.
Genome research 2000;10(7):959-66.
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1999: Abergel C; Bouveret E; Claverie J M; Brown K; Rigal A; Lazdunski C; Bénédetti H
Structure of the Escherichia coli TolB protein determined by MAD methods at 1.95 A resolution.
Structure (London, England : 1993) 1999;7(10):1291-300.
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1999: Ewing R M; Ben Kahla A; Poirot O; Lopez F; Audic S; Claverie J M
Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression.
Genome research 1999;9(10):950-9.
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1999: Abergel C; Chenivesse S; Stinnakre M G; Guasco S; Bréchot C; Claverie J M; Devinoy E; Christa L
Crystallization and preliminary crystallographic study of HIP/PAP, a human C-lectin overexpressed in primary liver cancers.
Acta crystallographica. Section D, Biological crystallography 1999;55(Pt 8):1487-9.
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1999: Abergel C; Robertson D L; Claverie J M
"Hidden" dUTPase sequence in human immunodeficiency virus type 1 gp120.
Journal of virology 1999;73(1):751-3.
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1999: Claverie J M
Computational methods for the identification of differential and coordinated gene expression.
Human molecular genetics 1999;8(10):1821-32.
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1998: Audic S; Claverie J M
Self-identification of protein-coding regions in microbial genomes.
Proceedings of the National Academy of Sciences of the United States of America 1998;95(17):10026-31.
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1998: Gautheret D; Poirot O; Lopez F; Audic S; Claverie J M
Alternate polyadenylation in human mRNAs: a large-scale analysis by EST clustering.
Genome research 1998;8(5):524-30.
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1998: Abergel C; Rigal A; Chenivesse S; Lazdunski C; Claverie J M; Bouveret E; Bénédetti H
Crystallization and preliminary crystallographic study of a component of the Escherichia coli tol system: TolB.
Acta crystallographica. Section D, Biological crystallography 1998;54(Pt 1):102-4.
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1998: Audic S; Claverie J M
Visualizing the competitive recognition of TATA-boxes in vertebrate promoters.
Trends in genetics : TIG 1998;14(1):10-1.
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1997: Audic S; Claverie J M
The significance of digital gene expression profiles.
Genome research 1997;7(10):986-95.
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1997: Audic S; Lopez F; Claverie J M; Poirot O; Abergel C
SAmBA: an interactive software for optimizing the design of biological macromolecules crystallization experiments.
Proteins 1997;29(2):252-7.
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1997: Audic S; Claverie J M
Detection of eukaryotic promoters using Markov transition matrices.
Computers & chemistry 1997;21(4):223-7.
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1997: Claverie J M; Poirot O; Lopez F
The difficulty of identifying genes in anonymous vertebrate sequences.
Computers & chemistry 1997;21(4):203-14.
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1997: Claverie J M
Computational methods for the identification of genes in vertebrate genomic sequences.
Human molecular genetics 1997;6(10):1735-44.
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1996: Claverie J M; Audic S
The statistical significance of nucleotide position-weight matrix matches.
Computer applications in the biosciences : CABIOS 1996;12(5):431-9.
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