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Constantin Aliferis

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Alexander Statnikov; Mikael Henaff; Nikita I Lytkin; Constantin F Aliferis
New methods for separating causes from effects in genomics data.
Jonathan E Feig; Edward A Fisher; Michael J Garabedian; Vladimir Reiser; Alexander Statnikov; Yuliya Vengrenyuk; Chaowei Wu; Constantin F Aliferis; Oscar Puig
Regression of atherosclerosis is characterized by broad changes in the plaque macrophage transcriptome.
Lawrence D Fu; Lily Wang; Yin Aphinyanaphongs; Constantin F Aliferis
A comparison of evaluation metrics for biomedical journals, articles, and websites in terms of sensitivity to topic.

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All Publications

2012: Alexander Statnikov; Mikael Henaff; Nikita I Lytkin; Constantin F Aliferis
New methods for separating causes from effects in genomics data.
BMC genomics 2012;13 Suppl 8():S22.
2012: Jonathan E Feig; Edward A Fisher; Michael J Garabedian; Vladimir Reiser; Alexander Statnikov; Yuliya Vengrenyuk; Chaowei Wu; Constantin F Aliferis; Oscar Puig
Regression of atherosclerosis is characterized by broad changes in the plaque macrophage transcriptome.
PloS one 2012;7(6):e39790.
2011: Lawrence D Fu; Lily Wang; Yin Aphinyanaphongs; Constantin F Aliferis
A comparison of evaluation metrics for biomedical journals, articles, and websites in terms of sensitivity to topic.
Journal of biomedical informatics 2011;44(4):587-94.
2011: Constantin F Aliferis; Yin Aphinyanaphongs; S Brown; D Fenyo; L Fu; S Shen; Alexander Statnikov; Alexander V Alekseyenko; J Wang
Trends and developments in bioinformatics in 2010: prospects and perspectives.
Yearbook of medical informatics 2011;6(1):146-55.
2011: Nikita I Lytkin; Lauren McVoy; Constantin F Aliferis; Jörn-Hendrik Weitkamp; Alexander Statnikov
Expanding the understanding of biases in development of clinical-grade molecular signatures: a case study in acute respiratory viral infections.
PloS one 2011;6(6):e20662.
2011: Alexander V Alekseyenko; Constantin F Aliferis; Bo Ding; Nikita I Lytkin; Leonid Padyukov; Jizhou Ai; Alexander Statnikov
Causal graph-based analysis of genome-wide association data in rheumatoid arthritis.
Biology direct 2011;6():25.
2011: Varun Narendra; Nikita I Lytkin; Constantin F Aliferis; Alexander Statnikov
A comprehensive assessment of methods for de-novo reverse-engineering of genome-scale regulatory networks.
Genomics 2011;97(1):7-18.
2010: Alexander Statnikov; Constantin F Aliferis
Analysis and computational dissection of molecular signature multiplicity.
PLoS computational biology 2010;6(5):e1000790.
2010: Alexander Statnikov; Lauren McVoy; Nikita Lytkin; Constantin F Aliferis
Improving development of the molecular signature for diagnosis of acute respiratory viral infections.
Cell host & microbe 2010;7(2):100-1; author reply 102.
2010: Alexander Statnikov; Nikita I Lytkin; Lauren McVoy; Jörn-Hendrik Weitkamp; Constantin F Aliferis
Using gene expression profiles from peripheral blood to identify asymptomatic responses to acute respiratory viral infections.
BMC research notes 2010;3():264.
2009: Nafeh Fananapazir; Alexander Statnikov; Constantin F Aliferis
The FAST-AIMS Clinical Mass Spectrometry Analysis System.
Advances in bioinformatics 2009;():598241.
2009: Firas H Wehbe; Steven H Brown; Pierre P Massion; Cynthia S Gadd; Daniel R Masys; Constantin F Aliferis
A novel information retrieval model for high-throughput molecular medicine modalities.
Cancer informatics 2009;8():1-17.
2009: Constantin F Aliferis; Alexander Statnikov; Ioannis Tsamardinos; Jonathan S Schildcrout; Bryan E Shepherd; Frank E Harrell
Factors influencing the statistical power of complex data analysis protocols for molecular signature development from microarray data.
PloS one 2009;4(3):e4922.
2008: Alexander Statnikov; Chun Li; Constantin F Aliferis
A statistical reappraisal of the findings of an esophageal cancer genome-wide association study.
Cancer research 2008;68(8):3074-5; author reply 3075.
2008: Lawrence D Fu; Constantin F Aliferis
Models for predicting and explaining citation count of biomedical articles.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2008;():222-6.
2008: Alexander Statnikov; Lily Wang; Constantin F Aliferis
A comprehensive comparison of random forests and support vector machines for microarray-based cancer classification.
BMC bioinformatics 2008;9():319.
2007: J Usha Raj; Constantin F Aliferis; Richard M Caprioli; Allen W Cowley; Peter F Davies; Mark W Duncan; David J Erle; Serpil C Erzurum; Patricia W Finn; Harry Ischiropoulos; Naftali Kaminski; Steven R Kleeberger; George Leikauf; James E Loyd; Thomas R Martin; Sadis Matalon; Jason Moore; John Quackenbush; Tara Sabo- Attwood; Steven D Shapiro; Jan E Schnitzer; David A Schwartz; Lisa M Schwiebert; Dean Sheppard; Lorraine B Ware; Scott Weiss; Jeff A Whitsett; Mark M Wurfel; Michael A Matthay
Genomics and proteomics of lung disease: conference summary.
American journal of physiology. Lung cellular and molecular physiology 2007;293(1):L45-51.
2007: Yin Aphinyanaphongs; Constantin F Aliferis
Text categorization models for identifying unproven cancer treatments on the web.
Studies in health technology and informatics 2007;129(Pt 2):968-72.
2007: Subramani Mani; Constantin F Aliferis; Shanthi Krishnaswami; Theodore A Kotchen
Learning causal and predictive clinical practice guidelines from data.
Studies in health technology and informatics 2007;129(Pt 2):850-4.
2007: Lawrence D Fu; Lily Wang; Yindalon Aphinyanagphongs; Constantin F Aliferis
A comparison of impact factor, clinical query filters, and pattern recognition query filters in terms of sensitivity to topic.
Studies in health technology and informatics 2007;129(Pt 1):716-20.
2007: Alexander Statnikov; Chun Li; Constantin F Aliferis
Effects of environment, genetics and data analysis pitfalls in an esophageal cancer genome-wide association study.
PloS one 2007;2(9):e958.
2006: Yin Aphinyanaphongs; Alexander Statnikov; Constantin F Aliferis
A comparison of citation metrics to machine learning filters for the identification of high quality MEDLINE documents.
Journal of the American Medical Informatics Association : JAMIA 2006;13(4):446-55.
2006: Constantin F Aliferis; Alexander Statnikov; Ioannis Tsamardinos
Challenges in the analysis of mass-throughput data: a technical commentary from the statistical machine learning perspective.
Cancer informatics 2006;2():133-62.
2006: Yin Aphinyanaphongs; Constantin F Aliferis
Prospective validation of text categorization filters for identifying high-quality, content-specific articles in MEDLINE.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2006;():6-10.
2006: Elmer Victor Bernstam; Jorge Herskovic; Yin Aphinyanaphongs; Constantin F Aliferis; Madurai G Sriram; William Hersh
Using citation data to improve retrieval from MEDLINE.
Journal of the American Medical Informatics Association : JAMIA 2006;13(1):96-105.
2005: Gregory F Cooper; Vijoy Abraham; Constantin F Aliferis; John M Aronis; Bruce G Buchanan; Rich Caruana; Michael J Fine; Janine E Janosky; Gary Livingston; Tom Mitchell; Stefano Monti; Peter Spirtes
Predicting dire outcomes of patients with community acquired pneumonia.
Journal of biomedical informatics 2005;38(5):347-66.
2005: Alexander Statnikov; Ioannis Tsamardinos; Yerbolat Dosbayev; Constantin F Aliferis
GEMS: a system for automated cancer diagnosis and biomarker discovery from microarray gene expression data.
International journal of medical informatics 2005;74(7-8):491-503.
2005: Yin Aphinyanaphongs; Ioannis Tsamardinos; Alexander Statnikov; Douglas Hardin; Constantin F Aliferis
Text categorization models for high-quality article retrieval in internal medicine.
Journal of the American Medical Informatics Association : JAMIA 2005;12(2):207-16.
2005: Alexander Statnikov; Constantin F Aliferis; Ioannis Tsamardinos; Douglas Hardin; Shawn Levy
A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis.
Bioinformatics (Oxford, England) 2005;21(5):631-43.
2005: Andrea Sboner; Constantin F Aliferis
Modeling clinical judgment and implicit guideline compliance in the diagnosis of melanomas using machine learning.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():664-8.
2005: N Fananapazir; M Li; D Spentzos; Constantin F Aliferis
Formative evaluation of a prototype system for automated analysis of mass spectrometry data.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():241-5.
2005: Stephany Duda; Constantin F Aliferis; Randolph Miller; Alexander Statnikov; Kevin Johnson
Extracting drug-drug interaction articles from MEDLINE to improve the content of drug databases.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2005;():216-20.
2004: Alexander Statnikov; Constantin F Aliferis; Ioannis Tsamardinos
Methods for multi-category cancer diagnosis from gene expression data: a comprehensive evaluation to inform decision support system development.
Studies in health technology and informatics 2004;107(Pt 2):813-7.
2004: Laura E Brown; Ioannis Tsamardinos; Constantin F Aliferis
A novel algorithm for scalable and accurate Bayesian network learning.
Studies in health technology and informatics 2004;107(Pt 1):711-5.
2004: Yin Aphinyanaphongs; Constantin F Aliferis
Learning Boolean queries for article quality filtering.
Studies in health technology and informatics 2004;107(Pt 1):263-7.
2003: Yin Aphinyanaphongs; Constantin F Aliferis
Text categorization models for retrieval of high quality articles in internal medicine.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():31-5.
2003: Constantin F Aliferis; Ioannis Tsamardinos; Alexander Statnikov
HITON: a novel Markov Blanket algorithm for optimal variable selection.
AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium 2003;():21-5.
2002: Constantin F Aliferis; Douglas Hardin; Pierre P Massion
Machine learning models for lung cancer classification using array comparative genomic hybridization.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 2002;():7-11.
1998: Constantin F Aliferis; Gregory F Cooper
Temporal representation design principles: an assessment in the domain of liver transplantation.
Proceedings / AMIA ... Annual Symposium. AMIA Symposium 1998;():170-4.
1997: Constantin F Aliferis; Gregory F Cooper; M E Pollack; Bruce G Buchanan; Michael M Wagner
Representing and developing temporally abstracted knowledge as a means towards facilitating time modeling in medical decision-support systems.
Computers in biology and medicine 1997;27(5):411-34.
1997: Gregory F Cooper; Constantin F Aliferis; R Ambrosino; John M Aronis; Bruce G Buchanan; Rich Caruana; Michael J Fine; Clark Glymour; G Gordon; Barbara H Hanusa; Janine E Janosky; C Meek; Tom Mitchell; Tracey Richardson; Peter Spirtes
An evaluation of machine-learning methods for predicting pneumonia mortality.
Artificial intelligence in medicine 1997;9(2):107-38.
1996: Constantin F Aliferis; Gregory F Cooper; Randolph A Miller; Bruce G Buchanan; R Bankowitz; Nunzia Bettinsoli Giuse
A temporal analysis of QMR.
Journal of the American Medical Informatics Association : JAMIA 1996;3(1):79-91.
1995: Constantin F Aliferis; Randolph A Miller
On the heuristic nature of medical decision-support systems.
Methods of information in medicine 1995;34(1-2):5-14.
1995: Constantin F Aliferis; Gregory F Cooper; Bruce G Buchanan; Randolph A Miller; R Bankowitz; Nunzia Bettinsoli Giuse
Temporal reasoning abstractions in QMR.
Medinfo. MEDINFO 1995;8 Pt 1():847-51.
1995: Constantin F Aliferis; Gregory F Cooper
A new formalism for temporal modeling in medical decision-support systems.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1995;():213-7.
1994: Constantin F Aliferis; Gregory F Cooper; R Bankowitz
A temporal analysis of QMR: abstracted temporal representation and reasoning and initial assessment of diagnostic performance trade-offs.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1994;():709-15.
1993: Constantin F Aliferis; E Chao; Gregory F Cooper
Data explorer: a prototype expert system for statistical analysis.
Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care 1993;():389-93.