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Tom Coenye

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G Brackman; L De Meyer; Hans J Nelis; Tom Coenye
Biofilm inhibitory and eradicating activity of wound care products against Staphylococcus aureus and Staphylococcus epidermidis biofilms in an in vitro chronic wound model.
Gilles Brackman; Abed Al Aziz Al Quntar; Claes D Enk; Izet Karalic; Hans J Nelis; Morris Srebnik; Serge Van Calenbergh; Tom Coenye
Synthesis and evaluation of thiazolidinedione and dioxazaborocane analogues as inhibitors of AI-2 quorum sensing in Vibrio harveyi.
Heleen Van Acker; Silvia Bazzini; Nico Boon; Karen De Roy; Eshwar Mahenthiralingam; Thomas Messiaen; Hans J Nelis; Giovanna Riccardi; Andrea Sass; Claudia Udine; Tom Coenye
Biofilm-grown Burkholderia cepacia complex cells survive antibiotic treatment by avoiding production of reactive oxygen species.

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All Publications

2013: G Brackman; L De Meyer; Hans J Nelis; Tom Coenye
Biofilm inhibitory and eradicating activity of wound care products against Staphylococcus aureus and Staphylococcus epidermidis biofilms in an in vitro chronic wound model.
Journal of applied microbiology 2013;114(6):1833-42.
2013: Gilles Brackman; Abed Al Aziz Al Quntar; Claes D Enk; Izet Karalic; Hans J Nelis; Morris Srebnik; Serge Van Calenbergh; Tom Coenye
Synthesis and evaluation of thiazolidinedione and dioxazaborocane analogues as inhibitors of AI-2 quorum sensing in Vibrio harveyi.
Bioorganic & medicinal chemistry 2013;21(3):660-7.
2013: Heleen Van Acker; Silvia Bazzini; Nico Boon; Karen De Roy; Eshwar Mahenthiralingam; Thomas Messiaen; Hans J Nelis; Giovanna Riccardi; Andrea Sass; Claudia Udine; Tom Coenye
Biofilm-grown Burkholderia cepacia complex cells survive antibiotic treatment by avoiding production of reactive oxygen species.
PloS one 2013;8(3):e58943.
2013: Maria José Garcia-Fernandez; Gilles Brackman; Tom Coenye; Angel Concheiro; Carmen Alvarez-Lorenzo
Antiseptic cyclodextrin-functionalized hydrogels and gauzes for loading and delivery of benzalkonium chloride.
Biofouling 2013;29(3):261-71.
2013: Claudia Udine; Heleen Van Acker; Maria Rosalia Pasca; Giovanna Riccardi; Silvia Bazzini; Gilles Brackman; Silvia Buroni; Tom Coenye
Phenotypic and genotypic characterisation of Burkholderia cenocepacia J2315 mutants affected in homoserine lactone and diffusible signal factor-based quorum sensing systems suggests interplay between both types of systems.
PloS one 2013;8(1):e55112.
2012: Gilles Brackman; Shari Celen; Paul Cos; Louis Maes; Hans J Nelis; Martijn Risseeuw; Serge Van Calenbergh; Tom Coenye
Synthesis and evaluation of the quorum sensing inhibitory effect of substituted triazolyldihydrofuranones.
Bioorganic & medicinal chemistry 2012;20(15):4737-43.
2012: Maarten A Meire; Hans J Nelis; Tom Coenye; Roeland J G De Moor
In vitro inactivation of endodontic pathogens with Nd:YAG and Er:YAG lasers.
Lasers in medical science 2012;27(4):695-701.
2012: Anna Bink; Bruno P A Cammue; Tom Coenye; Gilmer Govaert; Sona Kuchariková; Hans Nelis; Patrick Van Dijck; Davy Vandenbosch; Karin Thevissen
Transcription factor Efg1 contributes to the tolerance of Candida albicans biofilms against antifungal agents in vitro and in vivo.
Journal of medical microbiology 2012;61(Pt 6):813-9.
2012: Davy Vandenbosch; Anna Bink; Bruno P A Cammue; Gilmer Govaert; Hans J Nelis; Karin Thevissen; Tom Coenye
Phytosphingosine-1-phosphate is a signaling molecule involved in miconazole resistance in sessile Candida albicans cells.
Antimicrobial agents and chemotherapy 2012;56(5):2290-4.
2012: Karin Thevissen; Davy Vandenbosch; Gabriele Vargas; Deming Xu; Anna Bink; Jill Blankenship; Tom Coenye; Talya R Davis; Piet W J De Groot; Patricia de Mello Tavares; Gilmer Govaert; Yusuf A Hannun; Jolanta Idkowiak-Baldys; Carol A Kumamoto; Aaron Mitchell; Leonardo Nimrichter; Terry Roemer; Sonia Rozental; Bruno P A Cammue
The plant defensin RsAFP2 induces cell wall stress, septin mislocalization and accumulation of ceramides in Candida albicans.
Molecular microbiology 2012;84(1):166-80.
2012: Tom Coenye; Evy De Witte; Kris Honraet; Petra Rigole; Bart Rossel; Gilles Brackman; Hans J Nelis
Eradication of Propionibacterium acnes biofilms by plant extracts and putative identification of icariin, resveratrol and salidroside as active compounds.
Phytomedicine : international journal of phytotherapy and phytopharmacology 2012;19(5):409-12.
2012: Tom Defoirdt; Tore Benneche; Gilles Brackman; Tom Coenye; Patrick Sorgeloos; Anne Aamdal Scheie
A quorum sensing-disrupting brominated thiophenone with a promising therapeutic potential to treat luminescent vibriosis.
PloS one 2012;7(7):e41788.
2012: Ilse Vandecandelaere; Peter Vosters; Liesbet De Bus; Dieter Deforce; Paul DEPUYDT; Nele Matthijs; Hans J Nelis; Filip Van Nieuwerburgh; Tom Coenye
Assessment of microbial diversity in biofilms recovered from endotracheal tubes using culture dependent and independent approaches.
PloS one 2012;7(6):e38401.
2012: Chaobo Huang; Joanna Rejman; Stefaan J Soenen; Marleen Temmerman; Serge Van Calenbergh; Ellen van Gulck; Guido Vanham; Hans Verstraelen; Chris Vervaet; Tom Coenye; Jo Demeester; Stefaan C De Smedt
Electrospun cellulose acetate phthalate fibers for semen induced anti-HIV vaginal drug delivery.
Biomaterials 2012;33(3):962-9.
2011: Tom Coenye; Hans J Nelis
Quality control of Saccharomyces boulardii- a response to the Letter of Honraet and Delcour (2011).
Journal of applied microbiology 2011;111(5):1296.
2011: Steven E A Christiaen; Gilles Brackman; Hans J Nelis; Tom Coenye
Isolation and identification of quorum quenching bacteria from environmental samples.
Journal of microbiological methods 2011;87(2):213-9.
2011: Anna Bink; Bruno P A Cammue; Tom Coenye; Hans Nelis; Davy Vandenbosch; Karin Thevissen
Superoxide dismutases are involved in Candida albicans biofilm persistence against miconazole.
Antimicrobial agents and chemotherapy 2011;55(9):4033-7.
2011: Anne-Sophie Messiaen; Hans Nelis; Regina Ortmann; Martin Schlitzer; Serge Van Calenbergh; Thomas Verbrugghen; Charlotte Declerck; Tom Coenye
Resistance of the Burkholderia cepacia complex to fosmidomycin and fosmidomycin derivatives.
International journal of antimicrobial agents 2011;38(3):261-4.
2011: Gilles Brackman; Paul Cos; Louis Maes; Hans J Nelis; Tom Coenye
Quorum sensing inhibitors increase the susceptibility of bacterial biofilms to antibiotics in vitro and in vivo.
Antimicrobial agents and chemotherapy 2011;55(6):2655-61.
2011: Tom Coenye; Heleen Van Acker; Elke Peeters; Andrea Sass; Silvia Buroni; Giovanna Riccardi; Eshwar Mahenthiralingam
Molecular mechanisms of chlorhexidine tolerance in Burkholderia cenocepacia biofilms.
Antimicrobial agents and chemotherapy 2011;55(5):1912-9.
2011: Angel Contreras-García; Emilio Bucio; Gilles Brackman; Tom Coenye; Angel Concheiro; Carmen Alvarez-Lorenzo
Biofilm inhibition and drug-eluting properties of novel DMAEMA-modified polyethylene and silicone rubber surfaces.
Biofouling 2011;27(2):123-35.
2011: Gilles Brackman; Shari Celen; Ulrik Hillaert; Serge Van Calenbergh; Paul Cos; Louis Maes; Hans J Nelis; Tom Coenye
Structure-activity relationship of cinnamaldehyde analogs as inhibitors of AI-2 based quorum sensing and their effect on virulence of Vibrio spp.
PloS one 2011;6(1):e16084.
2010: Heleen Van Acker; Elisabeth Van Snick; Hans J Nelis; Tom Coenye
In vitro activity of temocillin against planktonic and sessile Burkholderia cepacia complex bacteria.
Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society 2010;9(6):450-4.
2010: Katrien Forier; Anne-Sophie Messiaen; Tom Coenye; Hans Nelis; Shari Celen; Serge Van Calenbergh; Stefaan De Smedt; Jo Demeester; Kevin Braeckmans
Transport and delivery of antimicrobial agents in Burkholderia biofilms.
Journal of controlled release : official journal of the Controlled Release Society 2010;148(1):e35-6.
2010: Lies M E Vanhee; Hans J Nelis; Tom Coenye
What can be learned from genotyping of fungi?
Medical mycology : official publication of the International Society for Human and Animal Mycology 2010;48 Suppl 1():S60-9.
2010: Matthieu Ravelingien; Steven Mullens; Jan Luyten; Matthias D'Hondt; Jente Boonen; Bart De Spiegeleer; Tom Coenye; Chris Vervaet; Jean Paul Remon
Vancomycin release from poly(D,L-lactic acid) spray-coated hydroxyapatite fibers.
European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V 2010;76(3):366-70.
2010: Tom Coenye; Hans J Nelis
In vitro and in vivo model systems to study microbial biofilm formation.
Journal of microbiological methods 2010;83(2):89-105.
2010: L M E Vanhee; F Goemé; Hans J Nelis; Tom Coenye
Quality control of fifteen probiotic products containing Saccharomyces boulardii.
Journal of applied microbiology 2010;109(5):1745-52.
2010: Kristof De Prijck; Nele De Smet; Tom Coenye; Etienne Schacht; Hans J Nelis
Prevention of Candida albicans biofilm formation by covalently bound dimethylaminoethylmethacrylate and polyethylenimine.
Mycopathologia 2010;170(4):213-21.
2010: Jose-Fernando Rosa dos Santos; Juan J Torres-Labandeira; Nele Matthijs; Tom Coenye; Angel Concheiro; Carmen Alvarez-Lorenzo
Functionalization of acrylic hydrogels with alpha-, beta- or gamma-cyclodextrin modulates protein adsorption and antifungal delivery.
Acta biomaterialia 2010;6(10):3919-26.
2010: Tom Coenye
Response of sessile cells to stress: from changes in gene expression to phenotypic adaptation.
FEMS immunology and medical microbiology 2010;59(3):239-52.
2010: Tom Coenye
Social interactions in the Burkholderia cepacia complex: biofilms and quorum sensing.
Future microbiology 2010;5(7):1087-99.
2010: Lies M E Vanhee; Dana Perman; Hans J Nelis; Tom Coenye
Rapid quantification of itraconazole-resistant Aspergillus fumigatus in air.
Journal of microbiological methods 2010;81(2):197-9.
2010: Heleen Nailis; Davy Vandenbosch; Dieter Deforce; Hans J Nelis; Tom Coenye
Transcriptional response to fluconazole and amphotericin B in Candida albicans biofilms.
Research in microbiology 2010;161(4):284-92.
2010: Davy Vandenbosch; Kevin Braeckmans; Hans J Nelis; Tom Coenye
Fungicidal activity of miconazole against Candida spp. biofilms.
The Journal of antimicrobial chemotherapy 2010;65(4):694-700.
2010: Lies M E Vanhee; Wouter Meersseman; Katrien Lagrou; Johan Maertens; Hans J Nelis; Tom Coenye
Rapid and direct quantification of viable Candida species in whole blood by use of immunomagnetic separation and solid-phase cytometry.
Journal of clinical microbiology 2010;48(4):1126-31.
2010: Cesar A B Nava-Ortiz; Guillermina Burillo; Angel Concheiro; Emilio Bucio; Nele Matthijs; Hans Nelis; Tom Coenye; Carmen Alvarez-Lorenzo
Cyclodextrin-functionalized biomaterials loaded with miconazole prevent Candida albicans biofilm formation in vitro.
Acta biomaterialia 2010;6(4):1398-404.
2010: Sofie Theunissen; Lina De Smet; Ann Dansercoer; Bart Motte; Tom Coenye; Jozef J Van Beeumen; Bart Devreese; Savvas N Savvides; Bjorn Vergauwen
The 285 kDa Bap/RTX hybrid cell surface protein (SO4317) of Shewanella oneidensis MR-1 is a key mediator of biofilm formation.
Research in microbiology 2010;161(2):144-52.
2010: Kristof De Prijck; Nele De Smet; Kris Honraet; Steven Christiaen; Tom Coenye; Etienne Schacht; Hans J Nelis
Inhibition of Candida albicans biofilm formation by antimycotics released from modified polydimethyl siloxane.
Mycopathologia 2010;169(3):167-74.
2010: Heleen Nailis; Sona Kucharíková; Markéta Ricicová; Patrick Van Dijck; Dieter Deforce; Hans Nelis; Tom Coenye
Real-time PCR expression profiling of genes encoding potential virulence factors in Candida albicans biofilms: identification of model-dependent and -independent gene expression.
BMC microbiology 2010;10():114.
2010: Elke Peeters; Andrea Sass; Eshwar Mahenthiralingam; Hans Nelis; Tom Coenye
Transcriptional response of Burkholderia cenocepacia J2315 sessile cells to treatments with high doses of hydrogen peroxide and sodium hypochlorite.
BMC genomics 2010;11():90.
2010: Kristof De Prijck; Nele De Smet; Monika Rymarczyk-Machal; Gonzalez Van Driessche; Bart Devreese; Tom Coenye; Etienne Schacht; Hans J Nelis
Candida albicans biofilm formation on peptide functionalized polydimethylsiloxane.
Biofouling 2010;26(3):269-75.
2010: Pol Nadal Jimenez; Gudrun Koch; Evelina Papaioannou; Mariana Wahjudi; Joanna Krzeslak; Tom Coenye; Robbert Cool; Wim J Quax
Role of PvdQ in Pseudomonas aeruginosa virulence under iron-limiting conditions.
Microbiology (Reading, England) 2010;156(Pt 1):49-59.
2009: Gilles Brackman; Shari Celen; Kartik Baruah; Peter Bossier; Serge Van Calenbergh; Hans J Nelis; Tom Coenye
AI-2 quorum-sensing inhibitors affect the starvation response and reduce virulence in several Vibrio species, most likely by interfering with LuxPQ.
Microbiology (Reading, England) 2009;155(Pt 12):4114-22.
2009: Isabelle E J A François; Anna Bink; Jo Vandercappellen; Kathryn R Ayscough; Alexandre Toulmay; Roger Schneiter; Elke van Gyseghem; Guy Van den Mooter; Marcel Borgers; Davy Vandenbosch; Tom Coenye; Bruno P A Cammue; Karin Thevissen
Membrane rafts are involved in intracellular miconazole accumulation in yeast cells.
The Journal of biological chemistry 2009;284(47):32680-5.
2009: Elke Peeters; Hans J Nelis; Tom Coenye
In vitro activity of ceftazidime, ciprofloxacin, meropenem, minocycline, tobramycin and trimethoprim/sulfamethoxazole against planktonic and sessile Burkholderia cepacia complex bacteria.
The Journal of antimicrobial chemotherapy 2009;64(4):801-9.
2009: Kurt Houf; Stephen L W On; Tom Coenye; Lies Debruyne; Sarah De Smet; Peter Vandamme
Arcobacter thereius sp. nov., isolated from pigs and ducks.
International journal of systematic and evolutionary microbiology 2009;59(Pt 10):2599-604.
2009: Lies M E Vanhee; Hans J Nelis; Tom Coenye
Rapid detection and quantification of Aspergillus fumigatus in environmental air samples using solid-phase cytometry.
Environmental science & technology 2009;43(9):3233-9.
2009: Gilles Brackman; Ulrik Hillaert; Serge Van Calenbergh; Hans J Nelis; Tom Coenye
Use of quorum sensing inhibitors to interfere with biofilm formation and development in Burkholderia multivorans and Burkholderia cenocepacia.
Research in microbiology 2009;160(2):144-51.
2009: Lies M E Vanhee; Hans J Nelis; Tom Coenye
Detection and quantification of viable airborne bacteria and fungi using solid-phase cytometry.
Nature protocols 2009;4(2):224-31.
2009: Heleen Nailis; Roosmarijn Vandenbroucke; Kelly Tilleman; Dieter Deforce; Hans J Nelis; Tom Coenye
Monitoring ALS1 and ALS3 gene expression during in vitro Candida albicans biofilm formation under continuous flow conditions.
Mycopathologia 2009;167(1):9-17.
2008: E Peeters; Hans J Nelis; Tom Coenye
Evaluation of the efficacy of disinfection procedures against Burkholderia cenocepacia biofilms.
The Journal of hospital infection 2008;70(4):361-8.
2008: Wouter Huvenne; Nan Zhang; Edze Tijsma; Britt Hissong; Judtih Huurdeman; Gabriele Holtappels; Sofie Claeys; Paul van Cauwenberge; Hans Nelis; Tom Coenye; Claus Bachert
Pilot study using doxycycline-releasing stents to ameliorate postoperative healing quality after sinus surgery.
Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society 2008;16(6):757-67.
2008: Juan-Carlos Ruiz; Carmen Alvarez-Lorenzo; Pablo Taboada; Guillermina Burillo; Emilio Bucio; Kristof De Prijck; Hans J Nelis; Tom Coenye; Angel Concheiro
Polypropylene grafted with smart polymers (PNIPAAm/PAAc) for loading and controlled release of vancomycin.
European journal of pharmaceutics and biopharmaceutics : official journal of Arbeitsgemeinschaft für Pharmazeutische Verfahrenstechnik e.V 2008;70(2):467-77.
2008: L M E Vanhee; F Symoens; J-P Bouchara; Hans J Nelis; Tom Coenye
High-resolution genotyping of Aspergillus fumigatus isolates recovered from chronically colonised patients with cystic fibrosis.
European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology 2008;27(10):1005-7.
2008: Tom Coenye; K Honraet; B Rossel; Hans J Nelis
Biofilms in skin infections: Propionibacterium acnes and acne vulgaris.
Infectious disorders drug targets 2008;8(3):156-9.
2008: Lies M E Vanhee; Francoise Symoens; Hans J Nelis; Tom Coenye
Microsatellite typing of Aspergillus fumigatus isolates recovered from deep organ samples of patients with invasive aspergillosis.
Diagnostic microbiology and infectious disease 2008;62(1):96-8.
2008: Stéphane Compant; Jerzy Nowak; Tom Coenye; Christophe Clément; Essaïd Ait Barka
Diversity and occurrence of Burkholderia spp. in the natural environment.
FEMS microbiology reviews 2008;32(4):607-26.
2008: Elke Peeters; Hans J Nelis; Tom Coenye
Resistance of planktonic and biofilm-grown Burkholderia cepacia complex isolates to the transition metal gallium.
The Journal of antimicrobial chemotherapy 2008;61(5):1062-5.
2008: Elke Peeters; Hans J Nelis; Tom Coenye
Comparison of multiple methods for quantification of microbial biofilms grown in microtiter plates.
Journal of microbiological methods 2008;72(2):157-65.
2008: Gilles Brackman; Tom Defoirdt; Carol Miyamoto; Peter Bossier; Serge Van Calenbergh; Hans J Nelis; Tom Coenye
Cinnamaldehyde and cinnamaldehyde derivatives reduce virulence in Vibrio spp. by decreasing the DNA-binding activity of the quorum sensing response regulator LuxR.
BMC microbiology 2008;8():149.
2008: Lies M E Vanhee; Hans J Nelis; Tom Coenye
Enumeration of airborne bacteria and fungi using solid phase cytometry.
Journal of microbiological methods 2008;72(1):12-9.
2007: Tom Coenye; Pavel Drevinek; Eshwar Mahenthiralingam; Shiraz Ali Shah; Ryan T Gill; Peter Vandamme; David W Ussery
Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome.
FEMS microbiology letters 2007;276(1):83-92.
2007: Tom Coenye; Elke Peeters; Hans J Nelis
Biofilm formation by Propionibacterium acnes is associated with increased resistance to antimicrobial agents and increased production of putative virulence factors.
Research in microbiology 2007;158(4):386-92.
2007: Tom Coenye; Kris Honraet; Petra Rigole; Pol Nadal Jimenez; Hans J Nelis
In vitro inhibition of Streptococcus mutans biofilm formation on hydroxyapatite by subinhibitory concentrations of anthraquinones.
Antimicrobial agents and chemotherapy 2007;51(4):1541-4.
2007: Kristof De Prijck; Hans J Nelis; Tom Coenye
Efficacy of silver-releasing rubber for the prevention of Pseudomonas aeruginosa biofilm formation in water.
Biofouling 2007;23(5-6):405-11.
2007: Johan Goris; Konstantinos T Konstantinidis; Joel A Klappenbach; Tom Coenye; Peter Vandamme; James M Tiedje
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities.
International journal of systematic and evolutionary microbiology 2007;57(Pt 1):81-91.
2006: Barry Holmes; Paul Segers; Tom Coenye; Marc Vancanneyt; Peter Vandamme
Pannonibacter phragmitetus, described from a Hungarian soda lake in 2003, had been recognized several decades earlier from human blood cultures as Achromobacter groups B and E.
International journal of systematic and evolutionary microbiology 2006;56(Pt 12):2945-8.
2006: Wen-Ming Chen; Euan K James; Tom Coenye; Jui-Hsing Chou; Edmundo Barrios; Sergio M de Faria; GEOFFREY ELLIOTT; Shih-Yi Sheu; Janet I Sprent; Peter Vandamme
Burkholderia mimosarum sp. nov., isolated from root nodules of Mimosa spp. from Taiwan and South America.
International journal of systematic and evolutionary microbiology 2006;56(Pt 8):1847-51.
2006: Peter Vandamme; Barry Holmes; Herve Bercovier; Tom Coenye
Classification of Centers for Disease Control Group Eugonic Fermenter (EF)-4a and EF-4b as Neisseria animaloris sp. nov. and Neisseria zoodegmatis sp. nov., respectively.
International journal of systematic and evolutionary microbiology 2006;56(Pt 8):1801-5.
2006: Hanli de Beer; Celia J Hugo; Piet J Jooste; Marc Vancanneyt; Tom Coenye; Peter Vandamme
Chryseobacterium piscium sp. nov., isolated from fish of the South Atlantic Ocean off South Africa.
International journal of systematic and evolutionary microbiology 2006;56(Pt 6):1317-22.
2006: Joanna Koort; Tom Coenye; Eva M Santos; Christina Molinero; Isabel Jaime; Jordi Rovira; Peter Vandamme; Johanna Björkroth
Diversity of Weissella viridescens strains associated with "Morcilla de Burgos".
International journal of food microbiology 2006;109(1-2):164-8.
2006: Joanna Koort; Tom Coenye; Peter Vandamme; Johanna Björkroth
Streptococcus parauberis associated with modified atmosphere packaged broiler meat products and air samples from a poultry meat processing plant.
International journal of food microbiology 2006;106(3):318-23.
2006: Heleen Nailis; Tom Coenye; Filip Van Nieuwerburgh; Dieter Deforce; Hans J Nelis
Development and evaluation of different normalization strategies for gene expression studies in Candida albicans biofilms by real-time PCR.
BMC molecular biology 2006;7():25.
2005: Hanli de Beer; Celia J Hugo; Piet J Jooste; Anne Willems; Marc Vancanneyt; Tom Coenye; Peter A R Vandamme
Chryseobacterium vrystaatense sp. nov., isolated from raw chicken in a chicken-processing plant.
International journal of systematic and evolutionary microbiology 2005;55(Pt 5):2149-53.
2005: Dirk Gevers; Frederick M Cohan; Jeffrey G Lawrence; Brian G Spratt; Tom Coenye; Edward J Feil; Erko Stackebrandt; Yves Van de Peer; Peter Vandamme; Fabiano L Thompson; Jean Swings
Opinion: Re-evaluating prokaryotic species.
Nature reviews. Microbiology 2005;3(9):733-9.
2005: Tom Coenye; Peter Vandamme
Overrepresentation of immunostimulatory CpG motifs in Burkholderia genomes.
Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society 2005;4(3):193-6.
2005: Elke Vanlaere; Tom Coenye; Emly Samyn; Caroline Van den Plas; John R W Govan; Frans De Baets; Kris De Boeck; Christiane Knoop; Peter Vandamme
A novel strategy for the isolation and identification of environmental Burkholderia cepacia complex bacteria.
FEMS microbiology letters 2005;249(2):303-7.
2005: Joanna Koort; Anna Murros; Tom Coenye; Susanna Eerola; Peter Vandamme; Antti Sukura; Johanna Björkroth
Lactobacillus oligofermentans sp. nov., associated with spoilage of modified-atmosphere-packaged poultry products.
Applied and environmental microbiology 2005;71(8):4400-6.
2005: G Peter Gerrits; Corné Klaassen; Tom Coenye; Peter Vandamme; Jacques Meis
Burkholderia fungorum septicemia.
Emerging infectious diseases 2005;11(7):1115-7.
2005: George W Payne; Peter Vandamme; Sara H Morgan; John J LiPuma; Tom Coenye; Andrew J Weightman; T Hefin Jones; Eshwar Mahenthiralingam
Development of a recA gene-based identification approach for the entire Burkholderia genus.
Applied and environmental microbiology 2005;71(7):3917-27.
2005: Tom Coenye; Theodore Spilker; Rebecca Reik; Peter Vandamme; John J LiPuma
Use of PCR analyses to define the distribution of Ralstonia species recovered from patients with cystic fibrosis.
Journal of clinical microbiology 2005;43(7):3463-6.
2005: Tom Coenye; Peter Vandamme
Displacement of epsilon-proteobacterial core genes by horizontally transferred homologous genes.
Research in microbiology 2005;156(5-6):738-47.
2005: Tom Coenye; Dirk Gevers; Yves Van de Peer; Peter Vandamme; Jean Swings
Towards a prokaryotic genomic taxonomy.
FEMS microbiology reviews 2005;29(2):147-67.
2005: Kurt Houf; Stephen L W On; Tom Coenye; Jan Mast; Jan Van Hoof; Peter Vandamme
Arcobacter cibarius sp. nov., isolated from broiler carcasses.
International journal of systematic and evolutionary microbiology 2005;55(Pt 2):713-7.
2005: Tom Coenye; Peter Vandamme
Characterization of mononucleotide repeats in sequenced prokaryotic genomes.
DNA research : an international journal for rapid publication of reports on genes and genomes 2005;12(4):221-33.
2005: Tom Coenye; Elke Vanlaere; Emly Samyn; Enevold Falsen; Peter Larsson; Peter Vandamme
Advenella incenata gen. nov., sp. nov., a novel member of the Alcaligenaceae, isolated from various clinical samples.
International journal of systematic and evolutionary microbiology 2005;55(Pt 1):251-6.
2005: Tom Coenye; Peter Vandamme
Organisation of the S10, spc and alpha ribosomal protein gene clusters in prokaryotic genomes.
FEMS microbiology letters 2005;242(1):117-26.
2004: Peter F Hallin; Tom Coenye; Tim T Binnewies; Hanne Jarmer; Hans-Henrik Saerfeldt; David W Ussery
Genome update: correlation of bacterial genomic properties.
Microbiology (Reading, England) 2004;150(Pt 12):3899-903.
2004: Tom Coenye; Deborah Henry; David P Speert; Peter Vandamme
Burkholderia phenoliruptrix sp. nov., to accommodate the 2,4,5-trichlorophenoxyacetic acid and halophenol-degrading strain AC1100.
Systematic and applied microbiology 2004;27(6):623-7.
2004: Peter Vandamme; Tom Coenye
Taxonomy of the genus Cupriavidus: a tale of lost and found.
International journal of systematic and evolutionary microbiology 2004;54(Pt 6):2285-9.
2004: Tom Coenye; Theodore Spilker; Ann Van Schoor; John J LiPuma; Peter Vandamme
Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe.
Thorax 2004;59(11):952-4.
2004: Virginie Storms; Natasja van den Vreken; Tom Coenye; Eshwar Mahenthiralingam; John J LiPuma; Monique Gillis; Peter Vandamme
Polyphasic characterisation of Burkholderia cepacia-like isolates leading to the emended description of Burkholderia pyrrocinia.
Systematic and applied microbiology 2004;27(5):517-26.
2004: Joanna Koort; Tom Coenye; Peter Vandamme; Antti Sukura; Johanna Björkroth
Enterococcus hermanniensis sp. nov., from modified-atmosphere-packaged broiler meat and canine tonsils.
International journal of systematic and evolutionary microbiology 2004;54(Pt 5):1823-7.
2004: Tom Coenye; Elke Vanlaere; Enevold Falsen; Peter Vandamme
Stenotrophomonas africana Drancourt et al. 1997 is a later synonym of Stenotrophomonas maltophilia (Hugh 1981) Palleroni and Bradbury 1993.
International journal of systematic and evolutionary microbiology 2004;54(Pt 4):1235-7.
2004: Tom Coenye; Peter Vandamme
Bacterial whole-genome sequences: minimal information and strain availability.
Microbiology (Reading, England) 2004;150(Pt 7):2017-8.
2004: Tom Coenye; Peter Vandamme
A genomic perspective on the relationship between the Aquificales and the epsilon-Proteobacteria.
Systematic and applied microbiology 2004;27(3):313-22.
2004: Karen Vermis; Tom Coenye; John J LiPuma; Eshwar Mahenthiralingam; Hans J Nelis; Peter Vandamme
Proposal to accommodate Burkholderia cepacia genomovar VI as Burkholderia dolosa sp. nov.
International journal of systematic and evolutionary microbiology 2004;54(Pt 3):689-91.
2004: David W Ussery; Peter F Hallin; Karin Lagesen; Tom Coenye
Genome update: rRNAs in sequenced microbial genomes.
Microbiology (Reading, England) 2004;150(Pt 5):1113-5.
2004: Theodore Spilker; Tom Coenye; Peter Vandamme; John J LiPuma
PCR-based assay for differentiation of Pseudomonas aeruginosa from other Pseudomonas species recovered from cystic fibrosis patients.
Journal of clinical microbiology 2004;42(5):2074-9.
2004: Tom Coenye; Elke Vanlaere; John J LiPuma; Peter Vandamme
Identification of genomic groups in the genus Stenotrophomonas using gyrB RFLP analysis.
FEMS immunology and medical microbiology 2004;40(3):181-5.
2004: Tom Coenye; Peter Vandamme
Use of the genomic signature in bacterial classification and identification.
Systematic and applied microbiology 2004;27(2):175-85.
2003: Tom Coenye; Peter Vandamme
Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case.
Microbiology (Reading, England) 2003;149(Pt 12):3507-17.
2003: Tom Coenye; Peter Vandamme
Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes.
FEMS microbiology letters 2003;228(1):45-9.
2003: Tom Coenye; Marc Vancanneyt; Margo Cnockaert; Enevold Falsen; Jean Swings; Peter Vandamme
Kerstersia gyiorum gen. nov., sp. nov., a novel Alcaligenes faecalis-like organism isolated from human clinical samples, and reclassification of Alcaligenes denitrificans Rüger and Tan 1983 as Achromobacter denitrificans comb. nov.
International journal of systematic and evolutionary microbiology 2003;53(Pt 6):1825-31.
2003: Tom Coenye; Marc Vancanneyt; Enevold Falsen; Jean Swings; Peter Vandamme
Achromobacter insolitus sp. nov. and Achromobacter spanius sp. nov., from human clinical samples.
International journal of systematic and evolutionary microbiology 2003;53(Pt 6):1819-24.
2003: Tom Coenye; Peter Vandamme; John J LiPuma
Ralstonia respiraculi sp. nov., isolated from the respiratory tract of cystic fibrosis patients.
International journal of systematic and evolutionary microbiology 2003;53(Pt 5):1339-42.
2003: Tom Coenye; Peter Vandamme
Diversity and significance of Burkholderia species occupying diverse ecological niches.
Environmental microbiology 2003;5(9):719-29.
2003: Tom Coenye; Johan Goris; Paul De Vos; Peter Vandamme; John J LiPuma
Classification of Ralstonia pickettii-like isolates from the environment and clinical samples as Ralstonia insidiosa sp. nov.
International journal of systematic and evolutionary microbiology 2003;53(Pt 4):1075-80.
2003: Tom Coenye; Peter Vandamme; John J LiPuma; John R W Govan; Eshwar Mahenthiralingam
Updated version of the Burkholderia cepacia complex experimental strain panel.
Journal of clinical microbiology 2003;41(6):2797-8.
2003: Lixia Liu; Theodore Spilker; Tom Coenye; John J LiPuma
Identification by subtractive hybridization of a novel insertion element specific for two widespread Burkholderia cepacia genomovar III strains.
Journal of clinical microbiology 2003;41(6):2471-6.
2003: Tom Coenye; Peter Vandamme
Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome.
BMC genomics 2003;4(1):10.
2003: Peter Vandamme; Barry Holmes; Tom Coenye; Johan Goris; Eshwar Mahenthiralingam; John J LiPuma; John R W Govan
Burkholderia cenocepacia sp. nov.--a new twist to an old story.
Research in microbiology 2003;154(2):91-6.
2003: Tom Coenye
A golden age for microbial genomics.
Genome biology 2003;4(11):347.
2003: Tom Coenye; John J LiPuma
Population structure analysis of Burkholderia cepacia genomovar III: varying degrees of genetic recombination characterize major clonal complexes.
Microbiology (Reading, England) 2003;149(Pt 1):77-88.
2003: Tom Coenye; John J LiPuma
Molecular epidemiology of Burkholderia species.
Frontiers in bioscience : a journal and virtual library 2003;8():e55-67.
2002: Karen Vermis; Tom Coenye; Eshwar Mahenthiralingam; Hans J Nelis; Peter Vandamme
Evaluation of species-specific recA-based PCR tests for genomovar level identification within the Burkholderia cepacia complex.
Journal of medical microbiology 2002;51(11):937-40.
2002: Tom Coenye; Theodore Spilker; Alissa Martin; John J LiPuma
Comparative assessment of genotyping methods for epidemiologic study of Burkholderia cepacia genomovar III.
Journal of clinical microbiology 2002;40(9):3300-7.
2002: Elena P Ivanova; Glavur R Matte; Maria Helena Matte; Tom Coenye; Anwar Huq; Rita R Colwell
Characterization of Pseudoalteromonas citrea and P. nigrifaciens isolated from different ecological habitats based on REP-PCR genomic fingerprints.
Systematic and applied microbiology 2002;25(2):275-83.
2002: Tom Coenye; Peter Vandamme; John J LiPuma
Infection by Ralstonia species in cystic fibrosis patients: identification of R. pickettii and R. mannitolilytica by polymerase chain reaction.
Emerging infectious diseases 2002;8(7):692-6.
2002: John J LiPuma; Theodore Spilker; Tom Coenye; Carlos F Gonzalez
An epidemic Burkholderia cepacia complex strain identified in soil.
Lancet 2002;359(9322):2002-3.
2002: Peter Vandamme; Deborah Henry; Tom Coenye; Sazini Nzula; Marc Vancanneyt; John J LiPuma; David P Speert; John R W Govan; Eshwar Mahenthiralingam
Burkholderia anthina sp. nov. and Burkholderia pyrrocinia, two additional Burkholderia cepacia complex bacteria, may confound results of new molecular diagnostic tools.
FEMS immunology and medical microbiology 2002;33(2):143-9.
2002: Tom Coenye; Johan Goris; Theodore Spilker; Peter Vandamme; John J LiPuma
Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov.
Journal of clinical microbiology 2002;40(6):2062-9.
2002: Tom Coenye; John J LiPuma
Multilocus restriction typing: a novel tool for studying global epidemiology of Burkholderia cepacia complex infection in cystic fibrosis.
The Journal of infectious diseases 2002;185(10):1454-62.
2002: Lixia Liu; Tom Coenye; Jane L Burns; Paul W Whitby; Terrence L Stull; John J LiPuma
Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients.
Journal of clinical microbiology 2002;40(4):1210-3.
2002: Tom Coenye; John J LiPuma
Use of the gyrB gene for the identification of Pandoraea species.
FEMS microbiology letters 2002;208(1):15-9.
2001: Tom Coenye; Lixia Liu; Peter Vandamme; John J LiPuma
Identification of Pandoraea species by 16S ribosomal DNA-based PCR assays.
Journal of clinical microbiology 2001;39(12):4452-5.
2001: Tom Coenye; Peter Vandamme; J R Govan; John J LiPuma
Taxonomy and identification of the Burkholderia cepacia complex.
Journal of clinical microbiology 2001;39(10):3427-36.
2001: Johan Goris; Paul De Vos; Tom Coenye; Bart Hoste; Danielle Janssens; H Brim; Ludo Diels; Max Mergeay; Karel Kersters; Peter Vandamme
Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend.
International journal of systematic and evolutionary microbiology 2001;51(Pt 5):1773-82.
2001: W M Chen; S Laevens; T M Lee; Tom Coenye; P De Vos; M Mergeay; Peter Vandamme
Ralstonia taiwanensis sp. nov., isolated from root nodules of Mimosa species and sputum of a cystic fibrosis patient.
International journal of systematic and evolutionary microbiology 2001;51(Pt 5):1729-35.
2001: Tom Coenye; Eshwar Mahenthiralingam; Deborah Henry; John J LiPuma; S Laevens; Monique Gillis; David P Speert; Peter Vandamme
Burkholderia ambifaria sp. nov., a novel member of the Burkholderia cepacia complex including biocontrol and cystic fibrosis-related isolates.
International journal of systematic and evolutionary microbiology 2001;51(Pt 4):1481-90.
2001: Tom Coenye; S Laevens; Anne Willems; M Ohlén; W Hannant; John R W Govan; Monique Gillis; Enevold Falsen; Peter Vandamme
Burkholderia fungorum sp. nov. and Burkholderia caledonica sp. nov., two new species isolated from the environment, animals and human clinical samples.
International journal of systematic and evolutionary microbiology 2001;51(Pt 3):1099-107.
2001: Tom Coenye; John J LiPuma; Deborah Henry; Bart Hoste; Katrien Vandemeulebroecke; Monique Gillis; David P Speert; Peter Vandamme
Burkholderia cepacia genomovar VI, a new member of the Burkholderia cepacia complex isolated from cystic fibrosis patients.
International journal of systematic and evolutionary microbiology 2001;51(Pt 2):271-9.
2001: Jacques Balandreau; V Viallard; Benoit Cournoyer; Tom Coenye; S Laevens; Peter Vandamme
Burkholderia cepacia genomovar III Is a common plant-associated bacterium.
Applied and environmental microbiology 2001;67(2):982-5.
2001: Tom Coenye; S Laevens; Monique Gillis; Peter Vandamme
Genotypic and chemotaxonomic evidence for the reclassification of Pseudomonas woodsii (Smith 1911) Stevens 1925 as Burkholderia andropogonis (Smith 1911) Gillis et al. 1995.
International journal of systematic and evolutionary microbiology 2001;51(Pt 1):183-5.
2000: Tom Coenye; Monique Gillis; Peter Vandamme
Pseudomonas antimicrobica Attafuah and Bradbury 1990 is a junior synonym of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993.
International journal of systematic and evolutionary microbiology 2000;50 Pt 6():2135-9.
2000: D B Shelly; Theodore Spilker; E J Gracely; Tom Coenye; Peter Vandamme; John J LiPuma
Utility of commercial systems for identification of Burkholderia cepacia complex from cystic fibrosis sputum culture.
Journal of clinical microbiology 2000;38(8):3112-5.
2000: J D McMenamin; T M Zaccone; Tom Coenye; Peter Vandamme; John J LiPuma
Misidentification of Burkholderia cepacia in US cystic fibrosis treatment centers: an analysis of 1,051 recent sputum isolates.
Chest 2000;117(6):1661-5.
2000: Tom Coenye; Enevold Falsen; Bart Hoste; M Ohlén; Johan Goris; John R W Govan; Monique Gillis; Peter Vandamme
Description of Pandoraea gen. nov. with Pandoraea apista sp. nov., Pandoraea pulmonicola sp. nov., Pandoraea pnomenusa sp. nov., Pandoraea sputorum sp. nov. and Pandoraea norimbergensis comb. nov.
International journal of systematic and evolutionary microbiology 2000;50 Pt 2():887-99.
2000: Peter Vandamme; Eshwar Mahenthiralingam; B Holmes; Tom Coenye; Bart Hoste; P De Vos; Deborah Henry; David P Speert
Identification and population structure of Burkholderia stabilis sp. nov. (formerly Burkholderia cepacia genomovar IV).
Journal of clinical microbiology 2000;38(3):1042-7.
1999: Tom Coenye; Leo M Schouls; John R W Govan; Karel Kersters; Peter Vandamme
Identification of Burkholderia species and genomovars from cystic fibrosis patients by AFLP fingerprinting.
International journal of systematic bacteriology 1999;49 Pt 4():1657-66.
1999: John J LiPuma; B J Dulaney; J D McMenamin; Paul W Whitby; Terrence L Stull; Tom Coenye; P Vandamme
Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients.
Journal of clinical microbiology 1999;37(10):3167-70.
1999: Peter Vandamme; Johan Goris; Tom Coenye; Bart Hoste; Danielle Janssens; Karel Kersters; Paul De Vos; Enevold Falsen
Assignment of Centers for Disease Control group IVc-2 to the genus Ralstonia as Ralstonia paucula sp. nov.
International journal of systematic bacteriology 1999;49 Pt 2():663-9.
1999: Tom Coenye; Enevold Falsen; Marc Vancanneyt; Bart Hoste; John R W Govan; Karel Kersters; Peter Vandamme
Classification of Alcaligenes faecalis-like isolates from the environment and human clinical samples as Ralstonia gilardii sp. nov.
International journal of systematic bacteriology 1999;49 Pt 2():405-13.
1999: Tom Coenye; B Holmes; Karel Kersters; John R W Govan; Peter Vandamme
Burkholderia cocovenenans (van Damme et al. 1960) Gillis et al. 1995 and Burkholderia vandii Urakami et al. 1994 are junior synonyms of Burkholderia gladioli (Severini 1913) Yabuuchi et al. 1993 and Burkholderia plantarii (Azegami et al. 1987) Urakami et al. 1994, respectively.
International journal of systematic bacteriology 1999;49 Pt 1():37-42.
1997: Peter Vandamme; B Holmes; Marc Vancanneyt; Tom Coenye; Bart Hoste; Renata Coopman; Hilde Revets; S Lauwers; Monique Gillis; Karel Kersters; John R W Govan
Occurrence of multiple genomovars of Burkholderia cepacia in cystic fibrosis patients and proposal of Burkholderia multivorans sp. nov.
International journal of systematic bacteriology 1997;47(4):1188-200.