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Leslie Cope
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Research Profile (preview)
Concepts & Ideas
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Physiology
Anatomy
Procedures
Chemicals & Drugs
Living Beings
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Genes & Molecular Sequences
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Network (preview)
8
Parmigiani, Giovanni
7
Irizarry, Rafael
6
Baylin, Stephen
5
Schuebel, Kornel
4
Wang, Tian-Li
4
Herman, James
3
Ohm, Joyce
3
Iacobuzio-Donahue, Christine
3
McGarvey, Kelly
3
Kurman, Robert
3
Maitra, Anirban
3
SHIH, IE MING
2
van Criekinge, Wim
2
Wu, Zhijin
2
AHUJA, NITA
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Geonetwork of Leslie Cope (preview)
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All Publications
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2010: Hristov Alexandra C; Cope Leslie; Di Cello Francescopaolo; Reyes Marcelo Delos; Singh Mansher; Hillion Joelle A; Belton Amy; Joseph Biju; Schuldenfrei Andrew; Iacobuzio-Donahue Christine A; Maitra Anirban; Resar Linda M S
HMGA1 correlates with advanced tumor grade and decreased survival in pancreatic ductal adenocarcinoma.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2010;23(1):98-104.
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2009: Brown Martha; Kowalski Rose; Zorman Julie; Wang Xin-Min; Towne Victoria; Zhao Qinjian; Secore Susan; Finnefrock Adam C; Ebert Tim; Pancari Greg; Isett Kevin; Zhang Yuhua; Anderson Annaliesa S; Montgomery Donna; Cope Leslie; McNeely Tessie
Selection and characterization of murine monoclonal antibodies to Staphylococcus aureus iron-regulated surface determinant B with functional activity in vitro and in vivo.
Clinical and vaccine immunology : CVI 2009;16(8):1095-104.
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2009: Raedler Michael D; Heyne Samantha; Wagner Erica; Shalkowski Sheri K; Secore Susan; Anderson Annaliesa S; Cook James; Cope Leslie; McNeely Tessie; Retzlaff Mary; Shanter Jon; Rubinstein Leonard J; Green Tina; Kartsonis N; Esser Mark T
Serologic assay to quantify human immunoglobulin G antibodies to the Staphylococcus aureus iron surface determinant B antigen.
Clinical and vaccine immunology : CVI 2009;16(5):739-48.
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2009: Cook James; Hepler Robert; Pancari Greg; Kuklin Nelly; Fan Hongxia; Wang Xin-Min; Cope Leslie; Tan Charles; Joyce Joseph; Onishi Jan; Montgomery Donna; Anderson Annaliesa; McNeely Tessie
Staphylococcus aureus capsule type 8 antibodies provide inconsistent efficacy in murine models of staphylococcal infection.
Human vaccines 2009;5(4):254-63.
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2009: Hristov Alexandra C; Cope Leslie; Reyes Marcelo Delos; Singh Mansher; Iacobuzio-Donahue Christine; Maitra Anirban; Resar L M S
HMGA2 protein expression correlates with lymph node metastasis and increased tumor grade in pancreatic ductal adenocarcinoma.
Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc 2009;22(1):43-9.
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2009: Lin Xue; Afsari Bahman; Marchionni Luigi; Cope Leslie; Parmigiani Giovanni; Naiman Daniel; Geman Donald
The ordering of expression among a few genes can provide simple cancer biomarkers and signal BRCA1 mutations.
BMC bioinformatics 2009;10():256.
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2008: Amanchy Ramars; Zhong Jun; Molina Henrik; Chaerkady Raghothama; Iwahori Akiko; Kalume Dario Eluan; Grønborg Mads; Joore Jos; Cope Leslie; Pandey Akhilesh
Identification of c-Src tyrosine kinase substrates using mass spectrometry and peptide microarrays.
Journal of proteome research 2008;7(9):3900-10.
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2008: McGarvey Kelly M; Van Neste Leander; Cope Leslie; Ohm Joyce E; Herman James G; Van Criekinge Wim; Schuebel Kornel E; Baylin Stephen B
Defining a chromatin pattern that characterizes DNA-hypermethylated genes in colon cancer cells.
Cancer research 2008;68(14):5753-9.
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2008: Tiwari Vijay K; Cope Leslie; McGarvey Kelly M; Ohm Joyce E; Baylin Stephen B
A novel 6C assay uncovers Polycomb-mediated higher order chromatin conformations.
Genome research 2008;18(7):1171-9.
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2008: Chan Timothy A; Glockner Sabine; Yi Joo Mi; Chen Wei; Van Neste Leander; Cope Leslie; Herman James G; Velculescu Victor; Schuebel Kornel E; Ahuja Nita; Baylin Stephen B
Convergence of mutation and epigenetic alterations identifies common genes in cancer that predict for poor prognosis.
PLoS medicine 2008;5(5):e114.
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2008: Ting Angela H; Suzuki Hiromu; Cope Leslie; Schuebel Kornel E; Lee Byron H; Toyota Minoru; Imai Kohzoh; Shinomura Yasuhisa; Tokino Takashi; Baylin Stephen B
A requirement for DICER to maintain full promoter CpG island hypermethylation in human cancer cells.
Cancer research 2008;68(8):2570-5.
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2008: Hann Christine L; Daniel Vincent C; Sugar Elizabeth A; Dobromilskaya Irina; Murphy Sara C; Cope Leslie; Lin Xue; Hierman Jared S; Wilburn Daniel L; Watkins D Neil; Rudin Charles M
Therapeutic efficacy of ABT-737, a selective inhibitor of BCL-2, in small cell lung cancer.
Cancer research 2008;68(7):2321-8.
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2008: Garrett-Mayer Elizabeth; Parmigiani Giovanni; Zhong Xiaogang; Cope Leslie; Gabrielson Edward
Cross-study validation and combined analysis of gene expression microarray data.
Biostatistics (Oxford, England) 2008;9(2):333-54.
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2008: Braun Rosemary; Cope Leslie; Parmigiani Giovanni
Identifying differential correlation in gene/pathway combinations.
BMC bioinformatics 2008;9():488.
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2008: Campagna Domenico; Cope Leslie; Lakkur Sindhu S; Henderson Clark; Laheru Daniel; Iacobuzio-Donahue Christine A
Gene expression profiles associated with advanced pancreatic cancer.
International journal of clinical and experimental pathology 2008;1(1):32-43.
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2007: Schuebel Kornel E; Chen Wei; Cope Leslie; Glöckner Sabine C; Suzuki Hiromu; Yi Joo-Mi; Chan Timothy A; Van Neste Leander; Van Criekinge Wim; van den Bosch Sandra; van Engeland Manon; Ting Angela H; Jair Kamwing; Yu Wayne; Toyota Minoru; Imai Kohzoh; Ahuja Nita; Herman James G; Baylin Stephen B
Comparing the DNA hypermethylome with gene mutations in human colorectal cancer.
PLoS genetics 2007;3(9):1709-23.
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2007: Wu Feng; Dassopoulos Themistocles; Cope Leslie; Maitra Anirban; Brant Steven R; Harris Mary L; Bayless Theodore M; Parmigiani Giovanni; Chakravarti Shukti
Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis.
Inflammatory bowel diseases 2007;13(7):807-21.
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2007: Ohm Joyce E; McGarvey Kelly M; Yu Xiaobing; Cheng Linzhao; Schuebel Kornel E; Cope Leslie; Mohammad Helai P; Chen Wei; Daniel Vincent C; Yu Wayne; Berman David M; Jenuwein Thomas; Pruitt Kevin; Sharkis Saul J; Watkins D Neil; Herman James G; Baylin Stephen B
A stem cell-like chromatin pattern may predispose tumor suppressor genes to DNA hypermethylation and heritable silencing.
Nature genetics 2007;39(2):237-42.
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2007: Ho Yen-Yi; Cope Leslie; Dettling Marcel; Parmigiani Giovanni
Statistical methods for identifying differentially expressed gene combinations.
Methods in molecular biology (Clifton, N.J.) 2007;408():171-91.
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2007: Zahurak Marianna; Parmigiani Giovanni; Yu Wayne; Scharpf Robert B; Berman David; Schaeffer Edward; Shabbeer Shabana; Cope Leslie
Pre-processing Agilent microarray data.
BMC bioinformatics 2007;8():142.
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2006: Mao Tsui-Lien; Hsu Chih-Yi; Yen May J; Gilks Blake; Sheu Jim Jinn-Chyuan; Gabrielson Edward; Vang Russell; Cope Leslie; Kurman Robert J; Wang Tian-Li; Shih Ie-Ming
Expression of Rsf-1, a chromatin-remodeling gene, in ovarian and breast carcinoma.
Human pathology 2006;37(9):1169-75.
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2006: Nakayama Kentaro; Nakayama Naomi; Kurman Robert J; Cope Leslie; Pohl Gudrun; Samuels Yardena; Velculescu Victor E; Wang Tian-Li; Shih Ie-Ming
Sequence mutations and amplification of PIK3CA and AKT2 genes in purified ovarian serous neoplasms.
Cancer biology & therapy 2006;5(7):779-85.
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2006: Bilchick Kenneth C; Saha Sudip K; Mikolajczyk Ed; Cope Leslie; Ferguson Will J; Yu Wayne; Girouard Steven; Kass David A
Differential regional gene expression from cardiac dyssynchrony induced by chronic right ventricular free wall pacing in the mouse.
Physiological genomics 2006;26(2):109-15.
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2006: Cope Leslie; Hartman Scott M; Göhlmann Hinrich W H; Tiesman Jay P; Irizarry Rafael A
Analysis of Affymetrix GeneChip data using amplified RNA.
BioTechniques 2006;40(2):165-6, 168, 170.
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2006: Irizarry Rafael A; Cope Leslie M; Wu Zhijin
Feature-level exploration of a published Affymetrix GeneChip control dataset.
Genome biology 2006;7(8):404.
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2006: Salani Ritu; Chang Chao-Ling; Cope Leslie; Wang Tian-Li
Digital karyotyping: an update of its applications in cancer.
Molecular diagnosis & therapy 2006;10(4):231-7.
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2005: Hansel Nadia N; Hilmer Sara C; Georas Steve N; Cope Leslie M; Guo Jia; Irizarry Rafael A; Diette Gregory B
Oligonucleotide-microarray analysis of peripheral-blood lymphocytes in severe asthma.
The Journal of laboratory and clinical medicine 2005;145(5):263-74.
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2005: Singer Gad; Stöhr Robert; Cope Leslie; Dehari Reiko; Hartmann Arndt; Cao Deng-Fan; Wang Tian-Li; Kurman Robert J; Shih Ie-Ming
Patterns of p53 mutations separate ovarian serous borderline tumors and low- and high-grade carcinomas and provide support for a new model of ovarian carcinogenesis: a mutational analysis with immunohistochemical correlation.
The American journal of surgical pathology 2005;29(2):218-24.
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2004: Cope Leslie M; Irizarry Rafael A; Jaffee Harris A; Wu Zhijin; Speed Terence P
A benchmark for Affymetrix GeneChip expression measures.
Bioinformatics (Oxford, England) 2004;20(3):323-31.
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2004: Gautier Laurent; Cope Leslie; Bolstad Benjamin M; Irizarry Rafael A
affy--analysis of Affymetrix GeneChip data at the probe level.
Bioinformatics (Oxford, England) 2004;20(3):307-15.
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2004: Cope Leslie; Zhong Xiaogang; Garrett Elizabeth; Parmigiani Giovanni
MergeMaid: R tools for merging and cross-study validation of gene expression data.
Statistical applications in genetics and molecular biology 2004;3():Article29.
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2003: Cappola Thomas P; Cope Leslie; Cernetich Amy; Barouch Lili A; Minhas Khalid; Irizarry Rafael A; Parmigiani Giovanni; Durrani Sarfraz; Lavoie Tera; Hoffman Eric P; Ye Shui Q; Garcia Joe G N; Hare Joshua M
Deficiency of different nitric oxide synthase isoforms activates divergent transcriptional programs in cardiac hypertrophy.
Physiological genomics 2003;14(1):25-34.
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2003: Irizarry Rafael A; Bolstad Benjamin M; Collin Francois; Cope Leslie M; Hobbs Bridget; Speed Terence P
Summaries of Affymetrix GeneChip probe level data.
Nucleic acids research 2003;31(4):e15.
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