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Jean-Yves Coppée

Research Profile

Procedures

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Oligonucleotide Array Sequence Analysis

Physiology

Genes & Molecular Sequences

Chemicals & Drugs

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Mouse

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Olga Soutourina; Pierre Boudry; Jean-Yves Coppée; Bruno Dupuy; Chantal Le Bouguenec; Marc Monot; Christophe Pichon; Laure Saujet; Ekaterina Semenova; Konstantin Severinov; Odile Sismeiro; Isabelle Martin-Verstraete
Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile.
P Léger; Zeyni Mansuroglu; Odile Sismeiro; Eliette Bonnefoy; Jean-Yves Coppée; B Jagla; E Lara; Michèle Bouloy
Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells.
Jérémy Andres; Florence Arsène-Ploetze; Valérie Barbe; Céline Brochier-Armanet; Jessica Cleiss-Arnold; Jean-Yves Coppée; Marie-Agnès Dillies; Lucie Geist; Aurélie Joublin; Sandrine Koechler; Florent Lassalle; Marie Marchal; Claudine Médigue; Daniel Muller; Xavier Nesme; Frédéric Plewniak; Caroline Proux; Martha Helena Ramírez-Bahena; Joanne M Santini; Chantal Schenowitz; Odile Sismeiro; David Vallenet; Philippe N Bertin
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.

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All Publications

2013: Olga Soutourina; Pierre Boudry; Jean-Yves Coppée; Bruno Dupuy; Chantal Le Bouguenec; Marc Monot; Christophe Pichon; Laure Saujet; Ekaterina Semenova; Konstantin Severinov; Odile Sismeiro; Isabelle Martin-Verstraete
Genome-Wide Identification of Regulatory RNAs in the Human Pathogen Clostridium difficile.
PLoS genetics 2013;9(5):e1003493.
2013: P Léger; Zeyni Mansuroglu; Odile Sismeiro; Eliette Bonnefoy; Jean-Yves Coppée; B Jagla; E Lara; Michèle Bouloy
Dicer-2- and Piwi-mediated RNA interference in Rift Valley fever virus-infected mosquito cells.
Journal of virology 2013;87(3):1631-48.
2013: Jérémy Andres; Florence Arsène-Ploetze; Valérie Barbe; Céline Brochier-Armanet; Jessica Cleiss-Arnold; Jean-Yves Coppée; Marie-Agnès Dillies; Lucie Geist; Aurélie Joublin; Sandrine Koechler; Florent Lassalle; Marie Marchal; Claudine Médigue; Daniel Muller; Xavier Nesme; Frédéric Plewniak; Caroline Proux; Martha Helena Ramírez-Bahena; Joanne M Santini; Chantal Schenowitz; Odile Sismeiro; David Vallenet; Philippe N Bertin
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26.
Genome biology and evolution 2013;5(5):934-53.
2013: Steve P Bernier; Jean-Yves Coppée; Alicia S DeFrancesco; Jean-Marc Ghigo; David Lebeaux; Guillaume Soubigou; Amandine Valomon; Christophe Beloin
Starvation, together with the SOS response, mediates high biofilm-specific tolerance to the fluoroquinolone ofloxacin.
PLoS genetics 2013;9(1):e1003144.
2012: Barbara Gayraud-Morel; Aurélie Jory; Vincent Mouly; E Negroni; Ramkumar Sambasivan; Guillaume Soubigou; Fabrice Chrétien; Jean-Yves Coppée; Ana Cumano; James Di Santo; Patricia Flamant; Shahragim Tajbakhsh
Myf5 haploinsufficiency reveals distinct cell fate potentials for adult skeletal muscle stem cells.
Journal of cell science 2012;125(Pt 7):1738-49.
2012: Alice Jouneau; Luc Jouneau; Odile Sismeiro; Sandrine Vandormael-Pournin; Qi Zhou; Christophe Antoniewski; Vincent Brochard; Constance Ciaudo; Jean-Yves Coppée; Edith Heard; Michel Cohen-Tannoudji
Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles.
RNA (New York, N.Y.) 2012;18(2):253-64.
2012: Emilie Giraud; Jean-Yves Coppée; Hervé Lecoeur; Geneviève Milon; Eric Prina; Guillaume Soubigou; Thierry Lang
Distinct transcriptional signatures of bone marrow-derived C57BL/6 and DBA/2 dendritic leucocytes hosting live Leishmania amazonensis amastigotes.
PLoS neglected tropical diseases 2012;6(12):e1980.
2012: Sanjiveeni Dhamgaye; Stéphane Le Crom; Gaëlle Lelandais; Sophie Lemoine; Rajendra Prasad; Odile Sismeiro; Maria Bernard; Jean-Yves Coppée; Frédéric Devaux
RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.
BMC genomics 2012;13():396.
2012: Julien Santi-Rocca; Sherri Smith; Christian Weber; Jean-Yves Coppée; Marie-Agnès Dillies; Chung Chau Hon; Alfonso Olivos-García; Erika Pineda; Sandrine Rousseau; Emma Saavedra; Nancy Guillén
Endoplasmic reticulum stress-sensing mechanism is activated in Entamoeba histolytica upon treatment with nitric oxide.
PloS one 2012;7(2):e31777.
2011: Bernd Jagla; Bernd Wiswedel; Jean-Yves Coppée
Extending KNIME for next-generation sequencing data analysis.
Bioinformatics (Oxford, England) 2011;27(20):2907-9.
2011: Guillaume Deplaine; Catherine Lavazec; Emmanuel Bischoff; Onguma Natalang; Sylvie Perrot; Micheline Guillotte-Blisnick; Jean-Yves Coppée; Bruno Pradines; Odile Mercereau-Puijalon; Peter H David
Artesunate tolerance in transgenic Plasmodium falciparum parasites overexpressing a tryptophan-rich protein.
Antimicrobial agents and chemotherapy 2011;55(6):2576-84.
2011: Anne-Laure Roux; Aurélie Ray; Alexandre Pawlik; Halima Medjahed; Gilles Etienne; Martin Rottman; Emilie Catherinot; Jean-Yves Coppée; Karima Chaoui; Bernard Monsarrat; Antoine Toubert; Mamadou Daffé; Germain Puzo; Jean-Louis Gaillard; Roland Brosch; Nicolas Dulphy; Jérôme Nigou; Jean-Louis Herrmann
Overexpression of proinflammatory TLR-2-signalling lipoproteins in hypervirulent mycobacterial variants.
Cellular microbiology 2011;13(5):692-704.
2011: Simon Dittami; Caroline Proux; Sylvie Rousvoal; Akira F Peters; J Mark Cock; Jean-Yves Coppée; Catherine Boyen; Thierry Tonon
Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae).
BMC molecular biology 2011;12():2.
2010: Jean-Michel Thiberge; Caroline Boursaux-Eude; Philippe Lehours; Marie-Agnès Dillies; Sophie Creno; Jean-Yves Coppée; Zoé Rouy; Aurélie Lajus; Laurence Ma; Christophe Burucoa; Anne Ruskoné-Foumestraux; Anne Courillon-Mallet; Hilde De Reuse; Ivo G Boneca; Dominique Lamarque; Francis Mégraud; Jean-Charles Delchier; Claudine Médigue; Christiane Bouchier; Agnès Labigne; Josette Raymond
From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.
BMC genomics 2010;11():368.
2010: Sandrine Koechler; Jessica Cleiss-Arnold; Caroline Proux; Odile Sismeiro; Marie-Agnès Dillies; Florence Goulhen-Chollet; Florence Hommais; Didier Lièvremont; Florence Arsène-Ploetze; Jean-Yves Coppée; Philippe N Bertin
Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.
BMC microbiology 2010;10():53.
2009: Delphine Fagegaltier; Anne-Laure Bougé; Bassam BERRY; Emilie Poisot; Odile Sismeiro; Jean-Yves Coppée; Laurent Théodore; Olivier Voinnet; Christophe Antoniewski
The endogenous siRNA pathway is involved in heterochromatin formation in Drosophila.
Proceedings of the National Academy of Sciences of the United States of America 2009;106(50):21258-63.
2009: Willem van Schaik; Alice Château; Marie-Agnès Dillies; Jean-Yves Coppée; Abraham L Sonenshein; Agnès Fouet
The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence.
Infection and immunity 2009;77(10):4437-45.
2009: Marie-Pierre Forquin; Hugo Duvergey; Caroline Proux; Valentin Loux; Jerome Mounier; Sophie Landaud; Jean-Yves Coppée; Jean-François Gibrat; Pascal Bonnarme; Isabelle Martin-Verstraete; Tatiana Vallaeys
Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.
Applied and environmental microbiology 2009;75(19):6406-9.
2009: Célia Payen; Gilles Fischer; Christian Marck; Caroline Proux; David James Sherman; Jean-Yves Coppée; Mark Johnston; Bernard Dujon; Cécile Neuvéglise
Unusual composition of a yeast chromosome arm is associated with its delayed replication.
Genome research 2009;19(10):1710-21.
2009: Olga Soutourina; Olivier Poupel; Jean-Yves Coppée; Antoine Danchin; Tarek Msadek; Isabelle Martin-Verstraete
CymR, the master regulator of cysteine metabolism in Staphylococcus aureus, controls host sulphur source utilization and plays a role in biofilm formation.
Molecular microbiology 2009;73(2):194-211.
2009: Alejandro Toledo-Arana; Olivier Dussurget; Georgios Nikitas; Nina Sesto; Hélène Guet-Revillet; Damien BALESTRINO; Edmund Loh; Jonas Gripenland; Teresa Tiensuu; Karolis Vaitkevicius; Mathieu Barthelemy; Massimo Vergassola; Marie-Anne Nahori; Guillaume Soubigou; Béatrice Régnault; Jean-Yves Coppée; Marc Lecuit; Jörgen Johansson; Pascale Cossart
The Listeria transcriptional landscape from saprophytism to virulence.
Nature 2009;459(7249):950-6.
2009: Héloïse Muller; Agnès Thierry; Jean-Yves Coppée; Catherine Gouyette; Christophe Hennequin; Odile Sismeiro; Emmanuel Talla; Bernard Dujon; Cecile Fairhead
Genomic polymorphism in the population of Candida glabrata: gene copy-number variation and chromosomal translocations.
Fungal genetics and biology : FG & B 2009;46(3):264-76.
2009: Nicolas Steenkeste; Marie-Agnès Dillies; Nimol Khim; Odile Sismeiro; Sophy Chy; Pharath Lim; Andreas Crameri; Christiane Bouchier; Odile Mercereau-Puijalon; Hans-Peter Beck; Mallika Imwong; Arjen M Dondorp; Duong Socheat; Christophe Rogier; Jean-Yves Coppée; Frédéric Ariey
FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance.
Malaria journal 2009;8():229.
2009: José Osorio y Fortéa; Emilie de La Llave; Béatrice Regnault; Jean-Yves Coppée; Geneviève Milon; Thierry Lang; Eric Prina
Transcriptional signatures of BALB/c mouse macrophages housing multiplying Leishmania amazonensis amastigotes.
BMC genomics 2009;10():119.
2009: Maman Laminou Ibrahim; Nicolas Steenkeste; Nimol Khim; Hadiza Hassane Adam; Lassana Konaté; Jean-Yves Coppée; Fredéric Ariey; Jean-Bernard Duchemin
Field-based evidence of fast and global increase of Plasmodium falciparum drug-resistance by DNA-microarrays and PCR/RFLP in Niger.
Malaria journal 2009;8():32.
2008: Samantha Blazquez; Ghislaine Guigon; Christian Weber; Sylvie Syan; Odile Sismeiro; Jean-Yves Coppée; Elisabeth Labruyère; Nancy Guillén
Chemotaxis of Entamoeba histolytica towards the pro-inflammatory cytokine TNF is based on PI3K signalling, cytoskeleton reorganization and the Galactose/N-acetylgalactosamine lectin activity.
Cellular microbiology 2008;10(8):1676-86.
2008: Jean-Yves Coppée
Do DNA microarrays have their future behind them?
Microbes and infection / Institut Pasteur 2008;10(9):1067-71.
2008: Sophie Goyard; Philipp Knechtle; Murielle Chauvel; Adeline Mallet; Marie-Christine Prévost; Caroline Proux; Jean-Yves Coppée; Patrick Schwartz; Françoise Dromer; Hyunsook Park; Scott Filler; Guilhem Janbon; Christophe d'Enfert
The Yak1 kinase is involved in the initiation and maintenance of hyphal growth in Candida albicans.
Molecular biology of the cell 2008;19(5):2251-66.
2008: José Osorio Y Fortéa; Eric Prina; Thierry Lang; Geneviève Milon; Clarisse Davory; Jean-Yves Coppée; Béatrice Regnault
AffyGCQC: a web-based interface to detect outlying genechips with extreme studentized deviate tests.
Journal of bioinformatics and computational biology 2008;6(2):317-34.
2008: Marie-Laure ROSSO; Sylvie Chauvaux; Rodrigue Dessein; Caroline Laurans; Lionel Frangeul; Céline Lacroix; Angèle Schiavo; Marie-Agnès Dillies; Jeannine Foulon; Jean-Yves Coppée; Claudine Médigue; Elisabeth Carniel; Michel Simonet; Michaël Marceau
Growth of Yersinia pseudotuberculosis in human plasma: impacts on virulence and metabolic gene expression.
BMC microbiology 2008;8():211.
2008: Claude Lamarre; Sergueï Sokol; Jean-Paul Debeaupuis; Christine Henry; Céline Lacroix; Philippe Glaser; Jean-Yves Coppée; Jean Marie François; Jean-Paul Latgé
Transcriptomic analysis of the exit from dormancy of Aspergillus fumigatus conidia.
BMC genomics 2008;9():417.
2008: Onguma Natalang; Emmanuel Bischoff; Guillaume Deplaine; Caroline Proux; Marie-Agnès Dillies; Odile Sismeiro; Ghislaine Guigon; Serge Bonnefoy; Jintana Patarapotikul; Odile Mercereau-Puijalon; Jean-Yves Coppée; Peter H David
Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate.
BMC genomics 2008;9():388.
2008: Nicaise Tuikue Ndam; Emmanuel Bischoff; Caroline Proux; Thomas Lavstsen; Ali Salanti; Juliette Guitard; Morten A Nielsen; Jean-Yves Coppée; Alioune Gaye; Thor G Theander; Peter H David; Philippe Deloron
Plasmodium falciparum transcriptome analysis reveals pregnancy malaria associated gene expression.
PloS one 2008;3(3):e1855.
2008: Julien Santi-Rocca; Christian Weber; Ghislaine Guigon; Odile Sismeiro; Jean-Yves Coppée; Nancy Guillén
The lysine- and glutamic acid-rich protein KERP1 plays a role in Entamoeba histolytica liver abscess pathogenesis.
Cellular microbiology 2008;10(1):202-17.
2007: Béatrice Jacquelin; Véronique Mayau; Guillaume Brysbaert; Béatrice Regnault; Ousmane M Diop; Fernando Arenzana-Seisdedos; Lars Rogge; Jean-Yves Coppée; Françoise Barré-Sinoussi; Arndt Benecke; Michaela C Müller-Trutwin
Long oligonucleotide microarrays for African green monkey gene expression profile analysis.
FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2007;21(12):3262-71.
2007: Sylvie Chauvaux; Marie-Laure ROSSO; Lionel Frangeul; Céline Lacroix; Laurent Labarre; Angèle Schiavo; Michael Marceau; Marie-Agnès Dillies; Jeannine Foulon; Jean-Yves Coppée; Claudine Médigue; Michel Simonet; Elisabeth Carniel
Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague.
Microbiology (Reading, England) 2007;153(Pt 9):3112-24.
2006: Holger Bruggemann; Arne Hagman; Matthieu Jules; Odile Sismeiro; Marie-Agnès Dillies; Catherine Gouyette; Frank Kunst; Michael Steinert; Klaus Heuner; Jean-Yves Coppée; Carmen Buchrieser
Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila.
Cellular microbiology 2006;8(8):1228-40.
2006: Meng-Tsung Tien; Stephen E Girardin; Béatrice Regnault; Lionel Le Bourhis; Marie-Agnès Dillies; Jean-Yves Coppée; Raphaëlle Bourdet-Sicard; Philippe J Sansonetti; Thierry Pédron
Anti-inflammatory effect of Lactobacillus casei on Shigella-infected human intestinal epithelial cells.
Journal of immunology (Baltimore, Md. : 1950) 2006;176(2):1228-37.
2005: Marc Monot; Nadine Honoré; Thierry Garnier; Romulo Araoz; Jean-Yves Coppée; Céline Lacroix; Samba Sow; John S Spencer; Richard W Truman; Diana L Williams; Robert Gelber; Marcos Virmond; Béatrice Flageul; Sang-Nae Cho; Baohong Ji; Alberto Paniz-Mondolfi; Jacinto Convit; Saroj Young; Paul E Fine; Voahangy Rasolofo; Patrick J Brennan; Stewart T Cole
On the origin of leprosy.
Science (New York, N.Y.) 2005;308(5724):1040-2.
2005: Anne-France Petit-Bertron; Thierry Pedron; Ulrich Gross; Jean-Yves Coppée; Philippe J Sansonetti; Jean-Marc Cavaillon; Minou Adib-Conquy
Adherence modifies the regulation of gene expression induced by interleukin-10.
Cytokine 2005;29(1):1-12.
2004: Florence Hommais; Evelyne Krin; Jean-Yves Coppée; Céline Lacroix; Edouard Yeramian; Antoine Danchin; Philippe N Bertin
GadE (YhiE): a novel activator involved in the response to acid environment in Escherichia coli.
Microbiology (Reading, England) 2004;150(Pt 1):61-72.
2003: Eliane Milohanic; Philippe Glaser; Jean-Yves Coppée; Lionel Frangeul; Yolanda Vega; José A Vázquez-Boland; Frank Kunst; Pascale Cossart; Carmen Buchrieser
Transcriptome analysis of Listeria monocytogenes identifies three groups of genes differently regulated by PrfA.
Molecular microbiology 2003;47(6):1613-25.
2001: Jean-Yves Coppée; Sandrine Auger; Evelyne Turlin; Agnieszka Sekowska; Jean-Pierre Le Caer; valérie LABAS; V Vagner; Antoine Danchin; Isabelle Martin-Verstraete
Sulfur-limitation-regulated proteins in Bacillus subtilis: a two-dimensional gel electrophoresis study.
Microbiology (Reading, England) 2001;147(Pt 6):1631-40.
2000: Agnieszka Sekowska; Jean-Yves Coppée; Jean-Pierre Le Caer; Isabelle Martin-Verstraete; Antoine Danchin
S-adenosylmethionine decarboxylase of Bacillus subtilis is closely related to archaebacterial counterparts.
Molecular microbiology 2000;36(5):1135-47.